Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc350.1 Carica papaya HOM05D004123 ORTHO05D004768 5.5e-164 580.9 287 100.0
Thecc.02G229500 Theobroma cacao HOM05D004123 ORTHO05D004768 2.2e-96 356.3 281 71.2
Duzib251G0145 Durio zibethinus HOM05D004123 ORTHO05D004768 5.1e-93 345.1 291 67.7
Gohir.A04G098200 Gossypium hirsutum HOM05D004123 ORTHO05D004768 1.8e-90 336.7 282 68.8
Gohir.D04G137875 Gossypium hirsutum HOM05D004123 ORTHO05D004768 1.2e-89 334.0 282 68.1
Gorai.012G122600 Gossypium raimondii HOM05D004123 ORTHO05D004768 1.2e-89 334.0 282 68.1
Manes.14G103000 Manihot esculenta HOM05D004123 ORTHO05D004768 4.6e-86 322.0 286 64.7
Duzib268G1624 Durio zibethinus HOM05D004123 ORTHO05D004768 3.9e-85 318.9 288 64.2
Duzib248G0829 Durio zibethinus HOM05D004123 ORTHO05D004768 3.3e-84 315.8 284 65.8
Potri.008G121200 Populus trichocarpa HOM05D004123 ORTHO05D004768 5.6e-84 315.1 289 64.0
Sabra08G0091900 Salix brachista HOM05D004123 ORTHO05D004768 1.4e-82 310.5 312 60.6
QL01p041642 Quercus lobata HOM05D004123 ORTHO05D004768 1.9e-79 300.1 290 63.8
Nn3g17856 Nelumbo nucifera HOM05D004123 ORTHO05D004768 4.2e-79 298.9 301 59.8
CiPaw.15G085900 Carya illinoinensis HOM05D004123 ORTHO05D004768 3.5e-78 295.8 293 60.8
Manes.06G067400 Manihot esculenta HOM05D004123 ORTHO05D004768 1.8e-77 293.5 256 65.6
Haze_17490 Corylus avellana HOM05D004123 ORTHO05D004768 2.4e-74 283.1 301 59.1
GSVIVG01011890001 Vitis vinifera HOM05D004123 ORTHO05D004768 2.9e-72 276.2 289 58.1
TAR622G0492 Trochodendron aralioides HOM05D004123 ORTHO05D004768 4.2e-71 272.3 302 57.3
Ciclev10018307m.g Citrus clementina HOM05D004123 ORTHO05D004768 7.1e-71 271.6 299 60.9
Gohir.D02G170500 Gossypium hirsutum HOM05D004123 ORTHO05D004768 4.6e-70 268.9 284 58.1
Gorai.005G191500 Gossypium raimondii HOM05D004123 ORTHO05D004768 4.6e-70 268.9 284 57.7
TAR629G2125 Trochodendron aralioides HOM05D004946 ORTHO05D006101 1.5e-68 263.8 314 53.8
Sed0009095 Sechium edule HOM05D004123 ORTHO05D004768 4.3e-68 262.3 297 54.2
Glyma.10G273800 Glycine max HOM05D004123 ORTHO05D004768 5.7e-68 261.9 286 58.7
Phvul.007G027700 Phaseolus vulgaris HOM05D004123 ORTHO05D004768 2.2e-67 260.0 289 57.1
Gohir.A03G147300 Gossypium hirsutum HOM05D004123 ORTHO05D004768 3.7e-67 259.2 285 57.9
Prupe.1G311900 Prunus persica HOM05D004123 ORTHO05D004768 6.3e-67 258.5 309 55.3
CsaV3_5G023110 Cucumis sativus L. HOM05D004123 ORTHO05D004768 1.8e-66 256.9 288 55.9
TWI31G0276 Tripterygium wilfordii HOM05D004123 ORTHO05D004768 3.1e-66 256.1 256 61.7
CiPaw.16G065300 Carya illinoinensis HOM05D004123 ORTHO05D004768 5.9e-65 251.9 276 59.8
MELO3C003021.2 Cucumis melo HOM05D004123 ORTHO05D004768 2.2e-64 250.0 288 55.2
Medtr1g110710 Medicago truncatula HOM05D004123 ORTHO05D004768 5.0e-64 248.8 292 55.1
Nn4g23857 Nelumbo nucifera HOM05D004123 ORTHO05D004768 8.5e-64 248.1 311 52.1
FvH4_4g27300 Fragaria vesca HOM05D004123 ORTHO05D004768 5.5e-63 245.4 317 52.7
Rhsim09G0107600 Rhododendron simsii HOM05D004123 ORTHO05D004768 3.6e-62 242.7 294 59.2
Lj5g0020149 Lotus japonicus HOM05D004123 ORTHO05D004768 5.7e-60 235.3 334 51.8
ClCG03G009600 Citrullus lanatus HOM05D004123 ORTHO05D004768 2.2e-59 233.4 299 52.2
Cc11_g10070 Coffea canephora HOM05D004123 ORTHO05D004768 4.8e-59 232.3 310 50.0
Oeu043592.1 Olea europaea HOM05D004123 ORTHO05D004768 6.3e-59 231.9 263 55.1
Aqoxy3G00286 Aquilegia oxysepala HOM05D004123 ORTHO05D004768 5.3e-58 228.8 315 50.5
SHI16201 Sapria himalayana HOM05D004123 ORTHO05D004768 7.7e-57 224.9 277 50.5
MSTRG.13535 Avicennia marina HOM05D004123 ORTHO05D004768 1.7e-56 223.8 262 53.8
TPR.G18823 Trifolium pratense HOM05D004123 ORTHO05D004768 2.2e-56 223.4 310 50.3
MSTRG.844 Avicennia marina HOM05D004123 ORTHO05D004768 5.0e-56 222.2 274 53.6
FAN12G0145 Fragaria x ananassa HOM05D004123 ORTHO05D004768 5.0e-56 222.2 345 47.2
FAN12G0921 Fragaria x ananassa HOM05D004123 ORTHO05D004768 5.0e-56 222.2 345 47.2
Glyma.20G116200 Glycine max HOM05D004123 ORTHO05D004768 2.1e-54 216.9 286 51.4
FAN07G2244 Fragaria x ananassa HOM05D004123 ORTHO05D004768 6.1e-54 215.3 351 46.4
Psat6g227440 Pisum sativum HOM05D004123 ORTHO05D004768 1.0e-53 214.5 287 51.6
TWI75G1885 Tripterygium wilfordii HOM05D004123 ORTHO05D004768 3.9e-53 212.6 262 53.1
Lj2g0014688 Lotus japonicus HOM05D004123 ORTHO05D004768 2.6e-52 209.9 287 51.9
TAR374G0469 Trochodendron aralioides HOM05D004123 ORTHO05D004768 2.6e-52 209.9 226 55.3
Actinidia14896 Actinidia chinensis HOM05D004123 ORTHO05D004768 3.3e-52 209.5 257 54.1
Oeu034240.1 Olea europaea HOM05D004123 ORTHO05D004768 3.3e-52 209.5 270 50.7
Potri.010G124200 Populus trichocarpa HOM05D004123 ORTHO05D004768 5.7e-52 208.8 216 61.1
Lsat_1_v5_gn_8_40481 Lactuca sativa HOM05D004123 ORTHO05D004768 2.2e-51 206.8 243 55.6
Sp5g23550 Schrenkiella parvula HOM05D004123 ORTHO05D004768 6.3e-51 205.3 221 58.4
Lj5g0023256 Lotus japonicus HOM05D004123 ORTHO05D004768 7.0e-50 201.8 290 49.7
Eucgr.G02316 Eucalyptus grandis HOM05D004123 ORTHO05D004768 1.5e-49 200.7 288 51.0
MD13G1040900 Malus domestica HOM05D004123 ORTHO05D004768 7.7e-49 198.4 273 50.2
SalBow8G0349 Salvia bowleyana HOM05D004123 ORTHO05D004768 2.2e-48 196.8 257 51.8
Lsat_1_v5_gn_3_59041 Lactuca sativa HOM05D004123 ORTHO05D004768 5.0e-48 195.7 239 53.6
AL2G27340 Arabidopsis lyrata HOM05D004123 ORTHO05D004768 6.5e-48 195.3 241 53.5
Carub.0002s1499 Capsella rubella HOM05D004123 ORTHO05D004768 6.5e-48 195.3 277 49.8
Phvul.003G031000 Phaseolus vulgaris HOM05D004123 ORTHO05D004768 6.5e-48 195.3 302 48.0
Lalb_Chr21g0308891 Lupinus albus HOM05D004123 ORTHO05D004768 8.5e-48 194.9 256 48.4
vmacro10561 Vaccinium macrocarpon HOM05D004123 ORTHO05D004768 1.1e-47 194.5 259 51.4
AT1G68480 Arabidopsis thaliana HOM05D004123 ORTHO05D004768 1.4e-47 194.1 275 48.4
Cfa018590 Carpinus fangiana HOM05D004123 ORTHO05D004768 1.4e-47 194.1 217 58.1
Thhalv10019033m.g Eutrema salsugineum HOM05D004123 ORTHO05D004768 1.9e-47 193.7 221 55.7
BcaC08g46276 Brassica carinata HOM05D004123 ORTHO05D004768 4.2e-47 192.6 221 56.1
C06p41480 Brassica napus HOM05D004123 ORTHO05D004768 4.2e-47 192.6 221 56.1
BolC6t39275H Brassica oleracea HOM05D004123 ORTHO05D004768 4.2e-47 192.6 221 56.1
PGR119G1213 Punica granatum HOM05D004123 ORTHO05D004768 4.2e-47 192.6 229 54.6
Solyc05g009380.4 Solanum lycopersicum HOM05D004123 ORTHO05D004768 5.5e-47 192.2 306 45.1
CARHR061260 Cardamine hirsuta HOM05D004123 ORTHO05D004768 2.7e-46 189.9 220 53.6
MD16G1042200 Malus domestica HOM05D004123 ORTHO05D004768 3.6e-46 189.5 272 49.6
CAN.G610.78 Capsicum annuum HOM05D004123 ORTHO05D004768 6.1e-46 188.7 272 45.6
BcaB03g15826 Brassica carinata HOM05D004123 ORTHO05D004768 8.0e-46 188.3 220 55.5
Lj6C757T7 Lonicera japonica HOM05D004123 ORTHO05D004768 1.0e-45 188.0 344 45.6
A02p15050 Brassica napus HOM05D004123 ORTHO05D004768 1.8e-45 187.2 227 53.7
PSO782G4509 Papaver somniferum HOM05D004123 ORTHO05D004768 1.8e-45 187.2 307 46.6
PSO063G6205 Papaver somniferum HOM05D004123 ORTHO05D004768 2.3e-45 186.8 305 46.2
A07p34880 Brassica napus HOM05D004123 ORTHO05D004768 6.7e-45 185.3 215 55.3
VMungo0720G2589 Vigna mungo HOM05D004123 ORTHO05D004768 6.7e-45 185.3 295 47.1
unitig_22.g6557 Utricularia gibba HOM05D004123 ORTHO05D004768 1.1e-44 184.5 297 45.8
COL.COLO4_03992 Corchorus olitorius HOM05D004123 ORTHO05D004768 1.3e-43 181.0 292 47.3
unitig_747.g21201 Utricularia gibba HOM05D004123 ORTHO05D004768 1.3e-43 181.0 230 50.4
FAN22G2099 Fragaria x ananassa HOM05D004123 ORTHO05D004768 1.7e-43 180.6 345 43.8
HanXRQChr08g0213911 Helianthus annuus HOM05D004123 ORTHO05D004768 3.7e-43 179.5 226 53.5
THA.LOC104821930 Tarenaya hassleriana HOM05D004123 ORTHO05D004768 7.0e-42 175.3 234 47.9
Sed0004295 Sechium edule HOM05D004123 ORTHO05D004768 1.6e-41 174.1 248 50.4
CANSAT01G1980 Cannabis sativa HOM05D004123 ORTHO05D004768 2.0e-41 173.7 247 48.6
CDE12G0443 Ceratophyllum demersum HOM05D004123 ORTHO05D004768 2.6e-41 173.3 224 49.6
BolC2t08567H Brassica oleracea HOM05D004123 ORTHO05D004768 7.7e-41 171.8 221 50.7
Dinv21080 Davidia involucrata HOM05D004123 ORTHO05D004768 7.7e-41 171.8 292 47.6
unitig_8.g3254 Utricularia gibba HOM05D004123 ORTHO05D004768 1.0e-40 171.4 286 44.8
C02p24750 Brassica napus HOM05D004123 ORTHO05D004768 6.5e-40 168.7 228 50.0
THA.LOC104805254 Tarenaya hassleriana HOM05D004123 ORTHO05D004768 6.5e-40 168.7 220 50.5
Sc04g0006360 Simmondsia chinensis HOM05D004123 ORTHO05D004768 8.5e-40 168.3 286 42.3
VMungo1215G3079 Vigna mungo HOM05D004123 ORTHO05D004768 8.5e-40 168.3 310 43.5
DCAR_026735 Daucus carota HOM05D004123 ORTHO05D004768 1.1e-39 167.9 238 49.6
HanXRQChr09g0252701 Helianthus annuus HOM05D004123 ORTHO05D004768 4.7e-38 162.5 210 52.9
Lalb_Chr10g0100051 Lupinus albus HOM05D004123 ORTHO05D004768 4.0e-37 159.5 238 47.5
Aa31sc366G10 Aethionema arabicum HOM05D004123 ORTHO05D004768 7.5e-36 155.2 241 45.6
ATR1125G037 Amborella trichopoda HOM05D004123 ORTHO05D004768 2.4e-34 150.2 218 46.8
Thhalv10009343m.g Eutrema salsugineum HOM05D004123 ORTHO05D004768 3.1e-34 149.8 227 48.9
AT1G13400 Arabidopsis thaliana HOM05D004123 ORTHO05D004768 5.3e-34 149.1 216 49.5
BcaB05g24386 Brassica carinata HOM05D004123 ORTHO05D004768 7.0e-34 148.7 123 65.0
Nitab4.5_0003373g0030 Nicotiana tabacum HOM05D004123 ORTHO05D004768 2.0e-33 147.1 246 45.1
Ah.03g137600 Amaranthus hybridus HOM05D004123 ORTHO05D004768 2.5e-31 140.2 225 44.4
Dinv31634 Davidia involucrata HOM05D004123 ORTHO05D004768 9.4e-31 138.3 211 50.7
Os01g0129200 Oryza sativa ssp. japonica HOM05D004123 ORTHO05D004768 2.7e-30 136.7 254 40.6
CSS0039482 Camellia sinensis var. sinensis HOM05D004123 ORTHO05D004768 1.8e-29 134.0 78 84.6
Psat6g226920 Pisum sativum HOM05D004123 ORTHO05D004768 3.0e-29 133.3 233 42.5
arahy.Tifrunner.gnm1.ann1.U1U6XH Arachis hypogaea HOM05D004123 ORTHO05D004768 4.0e-29 132.9 276 42.8
CARHR013770 Cardamine hirsuta HOM05D004123 ORTHO05D004768 4.0e-29 132.9 217 46.5
C08p16160 Brassica napus HOM05D004123 ORTHO05D004768 2.0e-28 130.6 223 45.3
Zm00001eb335100 Zea mays HOM05D004123 ORTHO05D004768 2.0e-28 130.6 237 40.9
Lalb_Chr02g0145931 Lupinus albus HOM05D004123 ORTHO05D004768 2.6e-28 130.2 224 46.0
AL1G25160 Arabidopsis lyrata HOM05D004123 ORTHO05D004768 3.4e-28 129.8 223 44.8
BolC8t49237H Brassica oleracea HOM05D004123 ORTHO05D004768 3.4e-28 129.8 227 44.9
Sabra10G0094200 Salix brachista HOM05D004123 ORTHO05D004768 3.4e-28 129.8 86 72.1
Sp1g11890 Schrenkiella parvula HOM05D004123 ORTHO05D004768 3.4e-28 129.8 219 47.5
Aa31LG1G1560 Aethionema arabicum HOM05D004123 ORTHO05D004768 1.3e-27 127.9 221 41.2
Lsat_1_v5_gn_8_41281 Lactuca sativa HOM05D004123 ORTHO05D004768 1.3e-27 127.9 189 48.1
Nitab4.5_0000791g0080 Nicotiana tabacum HOM05D004123 ORTHO05D004768 4.1e-26 122.9 172 53.5
A08p32310 Brassica napus HOM05D004123 ORTHO05D004768 5.4e-26 122.5 221 43.4
Carub.0001s1311 Capsella rubella HOM05D004123 ORTHO05D004768 7.0e-26 122.1 218 43.6
Migut.E00347 Erythranthe guttata HOM05D004123 ORTHO05D004768 1.2e-25 121.3 120 57.5
BraA08t35155Z Brassica rapa HOM05D004123 ORTHO05D004768 2.0e-25 120.6 213 44.6
CSS0040364 Camellia sinensis var. sinensis HOM05D004123 ORTHO05D004768 1.3e-24 117.9 197 45.7
arahy.Tifrunner.gnm1.ann1.1XFG43 Arachis hypogaea HOM05D004123 ORTHO05D004768 1.9e-23 114.0 291 37.5
THA.LOC104805006 Tarenaya hassleriana HOM05D004123 ORTHO05D004768 1.9e-23 114.0 270 38.1
BcaB03g13142 Brassica carinata HOM05D004123 ORTHO05D004768 3.3e-23 113.2 231 43.3
arahy.Tifrunner.gnm1.ann1.A2D7P4 Arachis hypogaea HOM05D004123 ORTHO05D004768 5.5e-23 112.5 259 39.0
Ca_03055_v3 Cicer arietinum L. HOM05D004123 ORTHO05D004768 1.2e-22 111.3 222 43.7
HPP92_004806 Vanilla planifolia HOM05D004123 ORTHO05D004768 1.2e-22 111.3 171 46.2
HPP92_004807 Vanilla planifolia HOM05D004123 ORTHO05D004768 1.2e-22 111.3 171 46.2
RcHm_v2.0_Chr4g0435091 Rosa chinensis HOM05D004123 ORTHO05D004768 2.1e-22 110.5 242 39.3
TPR.G971 Trifolium pratense HOM05D004123 ORTHO05D004768 8.0e-22 108.6 100 63.0
BcaC05g25048 Brassica carinata HOM05D004123 ORTHO05D004768 2.3e-21 107.1 223 40.4
Sopen05g005180 Solanum pennellii HOM05D004123 ORTHO05D004768 1.3e-19 101.3 236 36.9
SalBow8G0756 Salvia bowleyana HOM05D004123 ORTHO05D004768 6.3e-19 99.0 268 37.7
Migut.L01390 Erythranthe guttata HOM05D004123 ORTHO05D004768 1.2e-17 94.7 201 38.8
BraA02t06569Z Brassica rapa HOM05D004123 ORTHO05D004768 2.5e-15 87.0 149 44.3
Ca_11169_v3 Cicer arietinum L. HOM05D004123 ORTHO05D004768 1.2e-12 78.2 223 35.4
Peaxi162Scf00382g00826 Petunia axillaris HOM05D004123 ORTHO05D004768 6.4e-11 72.4 76 57.9
Pp3c20_10790 Physcomitrium patens HOM05D004123 ORTHO05D004768 3.2e-10 70.1 66 56.1
SMO266G0088 Selaginella moellendorffii HOM05D004123 ORTHO05D004768 3.2e-10 70.1 43 74.4
SMO288G0011 Selaginella moellendorffii HOM05D004123 ORTHO05D004768 3.2e-10 70.1 43 74.4
Medtr1g110740 Medicago truncatula HOM05D004123 ORTHO05D004768 5.4e-10 69.3 147 42.2
BcaC07g38691 Brassica carinata HOM05D004123 ORTHO05D004768 7.0e-10 68.9 216 32.9
AagrBONN_evm.TU.Sc2ySwM_228.1523 Anthoceros agrestis HOM05D004123 ORTHO05D004768 4.6e-09 66.2 175 34.9
Pp3c3_21050 Physcomitrium patens HOM05D004123 ORTHO05D004768 2.3e-08 63.9 58 56.9
Zm00001eb125440 Zea mays HOM05D004123 ORTHO05D004768 2.3e-08 63.9 226 32.3
Pp3c23_2190 Physcomitrium patens HOM05D004123 ORTHO05D004768 3.9e-08 63.2 46 60.9
Pp3c23_960 Physcomitrium patens HOM05D004123 ORTHO05D004768 3.9e-08 63.2 72 50.0
Pp3c23_800 Physcomitrium patens HOM05D059517 ORTHO05D004768 1.1e-07 61.6 214 33.6
ECA233G4891 Erigeron canadensis HOM05D004123 ORTHO05D004768 2.5e-07 60.5 139 37.4
A06p08360 Brassica napus HOM05D004123 ORTHO05D004768 1.2e-06 58.2 216 32.4
C05p09900 Brassica napus HOM05D004123 ORTHO05D004768 1.6e-06 57.8 224 32.1
BraA06t24033Z Brassica rapa HOM05D004123 ORTHO05D004768 2.1e-06 57.4 216 32.9
BolC5t29729H Brassica oleracea HOM05D004123 ORTHO05D004768 3.6e-06 56.6 215 32.1
SEGI_26835 Sequoiadendron giganteum HOM05D004123 ORTHO05D004768 8.0e-06 55.5 65 44.6


User provided reference genes

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