Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc35.62 Carica papaya HOM05D004670 ORTHO05D022223 2.7e-186 655.2 332 100.0
Cpa.g.sc15.139 Carica papaya HOM05D004670 ORTHO05D022223 1.9e-123 446.4 315 75.9
Cpa.g.sc209.39 Carica papaya HOM05D004670 ORTHO05D022223 1.4e-94 350.5 315 63.5
Cpa.g.sc40.12 Carica papaya HOM05D004670 ORTHO05D022223 9.1e-86 321.2 332 56.9
Cpa.g.c31883 Carica papaya HOM05D004670 ORTHO05D022223 5.6e-59 232.3 267 53.6
Cpa.g.sc127.45 Carica papaya HOM05D004670 ORTHO05D008020 3.5e-53 213.0 149 75.2
Haze_12758 Corylus avellana HOM05D004670 ORTHO05D008020 1.3e-47 194.5 170 61.8
Cfa014310 Carpinus fangiana HOM05D004670 ORTHO05D008020 8.3e-47 191.8 204 53.4
QL10p048429 Quercus lobata HOM05D004670 ORTHO05D008020 7.0e-46 188.7 267 47.2
Haze_20607 Corylus avellana HOM05D004670 ORTHO05D008020 9.2e-46 188.3 170 59.4
Atru.chr2.211 Acer truncatum HOM05D004670 ORTHO05D008020 5.6e-43 179.1 260 41.5
Thecc.06G195000 Theobroma cacao HOM05D004670 ORTHO05D008020 7.3e-43 178.7 208 49.5
CiPaw.07G084800 Carya illinoinensis HOM05D004670 ORTHO05D008020 1.2e-42 177.9 218 48.6
QL10p044086 Quercus lobata HOM05D004670 ORTHO05D008020 6.2e-42 175.6 208 50.0
Prupe.6G365500 Prunus persica HOM05D004670 ORTHO05D008020 4.0e-41 172.9 160 58.1
Duzib150G0183 Durio zibethinus HOM05D004670 ORTHO05D008020 1.2e-40 171.4 155 57.4
TWI18G1064 Tripterygium wilfordii HOM05D004670 ORTHO05D008020 2.6e-40 170.2 163 54.0
MD00G1017000 Malus domestica HOM05D004670 ORTHO05D008020 3.4e-40 169.9 197 50.3
CSS0027504 Camellia sinensis var. sinensis HOM05D004670 ORTHO05D008020 2.2e-39 167.2 195 49.7
CSS0030730 Camellia sinensis var. sinensis HOM05D004670 ORTHO05D008020 2.2e-39 167.2 195 49.7
COL.COLO4_09284 Corchorus olitorius HOM05D004670 ORTHO05D008020 4.9e-39 166.0 201 46.3
Dinv17145 Davidia involucrata HOM05D004670 ORTHO05D008020 8.3e-39 165.2 184 51.1
Nn1g09528 Nelumbo nucifera HOM05D004670 ORTHO05D008020 8.3e-39 165.2 155 56.1
Cpa.g.sc93.21 Carica papaya HOM05D004670 ORTHO05D022223 1.4e-38 164.5 130 68.5
Oeu040399.1 Olea europaea HOM05D004670 ORTHO05D008020 1.9e-38 164.1 162 56.2
Sabra16G0238400 Salix brachista HOM05D004670 ORTHO05D008020 1.9e-38 164.1 208 47.6
Gohir.D13G219500 Gossypium hirsutum HOM05D004670 ORTHO05D008020 4.1e-38 162.9 241 41.5
Manes.13G000200 Manihot esculenta HOM05D004670 ORTHO05D008020 9.2e-38 161.8 153 54.2
Nitab4.5_0008751g0030 Nicotiana tabacum HOM05D004670 ORTHO05D008020 9.2e-38 161.8 186 48.9
Gorai.013G250400 Gossypium raimondii HOM05D004670 ORTHO05D008020 1.2e-37 161.4 241 41.1
TAR362G1162 Trochodendron aralioides HOM05D004670 ORTHO05D008020 1.2e-37 161.4 180 48.3
Peaxi162Scf00066g00021 Petunia axillaris HOM05D004670 ORTHO05D008020 2.7e-37 160.2 189 48.7
Potri.001G361500 Populus trichocarpa HOM05D004670 ORTHO05D008020 2.7e-37 160.2 208 47.1
Gohir.A13G215800 Gossypium hirsutum HOM05D004670 ORTHO05D008020 3.5e-37 159.8 178 47.2
Sopen11g001140 Solanum pennellii HOM05D004670 ORTHO05D008020 6.0e-37 159.1 165 51.5
Rhsim05G0163600 Rhododendron simsii HOM05D004670 ORTHO05D008020 7.8e-37 158.7 211 46.0
Solyc11g005140.1 Solanum lycopersicum HOM05D004670 ORTHO05D008020 7.8e-37 158.7 165 50.9
Ciclev10004046m.g Citrus clementina HOM05D004670 ORTHO05D008020 1.1e-35 154.8 212 40.6
MBI07_g36706_MAGBIO Magnolia biondii HOM05D004670 ORTHO05D008020 1.9e-35 154.1 160 51.2
CAN.G716.1 Capsicum annuum HOM05D004670 ORTHO05D008020 7.3e-35 152.1 163 52.8
Nitab4.5_0001348g0230 Nicotiana tabacum HOM05D004670 ORTHO05D008020 7.3e-35 152.1 186 47.3
PGSC0003DMG400006026 Solanum tuberosum HOM05D004670 ORTHO05D008020 7.3e-35 152.1 195 45.6
Lj8P583T10 Lonicera japonica HOM05D004670 ORTHO05D008020 2.1e-34 150.6 189 45.5
CANSAT54G2504 Cannabis sativa HOM05D004670 ORTHO05D008020 1.4e-33 147.9 207 42.0
Sed0002677 Sechium edule HOM05D004670 ORTHO05D008020 1.4e-33 147.9 238 39.9
THA.LOC104827168 Tarenaya hassleriana HOM05D004670 ORTHO05D008020 1.8e-33 147.5 160 49.4
Aqoxy3G03703 Aquilegia oxysepala HOM05D004670 ORTHO05D008020 8.9e-33 145.2 155 49.0
Phvul.008G212400 Phaseolus vulgaris HOM05D004670 ORTHO05D008020 1.2e-32 144.8 194 41.8
Sc16g0010690 Simmondsia chinensis HOM05D004670 ORTHO05D008020 1.2e-32 144.8 176 46.0
EL10Ac4g10032 Beta vulgaris HOM05D004670 ORTHO05D008020 2.0e-32 144.1 182 45.1
MELO3C008575.2 Cucumis melo HOM05D004670 ORTHO05D008020 2.6e-32 143.7 205 42.0
Glyma.13G356700 Glycine max HOM05D004670 ORTHO05D008020 5.8e-32 142.5 159 48.4
SHI13694 Sapria himalayana HOM05D004670 ORTHO05D008020 5.8e-32 142.5 217 40.6
VMungo0647G0492 Vigna mungo HOM05D004670 ORTHO05D008020 1.3e-31 141.4 188 42.6
MSTRG.25359 Avicennia marina HOM05D004670 ORTHO05D008020 1.7e-31 141.0 148 53.4
Glyma.15G017400 Glycine max HOM05D004670 ORTHO05D008020 1.7e-31 141.0 189 43.4
RcHm_v2.0_Chr2g0131651 Rosa chinensis HOM05D004670 ORTHO05D008020 2.2e-31 140.6 151 49.0
SGA_v2.0_scaffold52G18920 Striga asiatica HOM05D004670 ORTHO05D008020 2.9e-31 140.2 243 38.3
FAN14G3835 Fragaria x ananassa HOM05D004670 ORTHO05D008020 3.8e-31 139.8 175 43.4
Ca_16311_v3 Cicer arietinum L. HOM05D004670 ORTHO05D008020 4.9e-31 139.4 168 45.8
THA.LOC104802429 Tarenaya hassleriana HOM05D004670 ORTHO05D008020 4.9e-31 139.4 252 39.3
CARHR076670 Cardamine hirsuta HOM05D004670 ORTHO05D008020 6.4e-31 139.0 231 37.2
CsaV3_2G010440 Cucumis sativus L. HOM05D004670 ORTHO05D008020 6.4e-31 139.0 231 38.5
AUR62025405 Chenopodium quinoa HOM05D004670 ORTHO05D008020 8.4e-31 138.7 178 43.3
Dinv17144 Davidia involucrata HOM05D004670 ORTHO05D008020 1.1e-30 138.3 150 49.3
Migut.C01066 Erythranthe guttata HOM05D004670 ORTHO05D008020 1.1e-30 138.3 162 48.8
Ah.06g195210 Amaranthus hybridus HOM05D004670 ORTHO05D008020 1.9e-30 137.5 199 40.2
FvH4_6g27990 Fragaria vesca HOM05D004670 ORTHO05D008020 2.4e-30 137.1 175 42.9
Cc10_g12810 Coffea canephora HOM05D004670 ORTHO05D008020 3.2e-30 136.7 157 49.7
Thhalv10020352m.g Eutrema salsugineum HOM05D004670 ORTHO05D008020 5.4e-30 136.0 220 40.0
Sp3g01690 Schrenkiella parvula HOM05D004670 ORTHO05D008020 7.1e-30 135.6 232 38.8
AUR62008838 Chenopodium quinoa HOM05D004670 ORTHO05D008020 1.6e-29 134.4 178 41.6
Eucgr.B01443 Eucalyptus grandis HOM05D004670 ORTHO05D008020 4.6e-29 132.9 157 49.7
Eucgr.L01231 Eucalyptus grandis HOM05D004670 ORTHO05D008020 4.6e-29 132.9 157 49.7
Psat5g107920 Pisum sativum HOM05D004670 ORTHO05D008020 7.8e-29 132.1 198 39.9
SalBow7G3652 Salvia bowleyana HOM05D004670 ORTHO05D008020 1.3e-28 131.3 124 55.6
SalBow7G4343 Salvia bowleyana HOM05D004670 ORTHO05D008020 1.3e-28 131.3 124 55.6
Lsat_1_v5_gn_7_7580 Lactuca sativa HOM05D004670 ORTHO05D008020 3.0e-28 130.2 207 39.6
EL10Ac7g17697 Beta vulgaris HOM05D004670 ORTHO05D008020 8.7e-28 128.6 205 40.5
CDE06G0776 Ceratophyllum demersum HOM05D004670 ORTHO05D008020 1.1e-27 128.3 159 42.1
AL3G12030 Arabidopsis lyrata HOM05D004670 ORTHO05D008020 1.5e-27 127.9 167 41.3
arahy.Tifrunner.gnm1.ann1.H9JUXY Arachis hypogaea HOM05D004670 ORTHO05D008020 1.9e-27 127.5 155 42.6
TPR.G23340 Trifolium pratense HOM05D004670 ORTHO05D008020 2.5e-27 127.1 167 43.1
PSO017G2252 Papaver somniferum HOM05D004670 ORTHO05D008020 7.3e-27 125.6 191 38.7
TPR.G9216 Trifolium pratense HOM05D004670 ORTHO05D008020 7.3e-27 125.6 164 42.1
Lj2g0025819 Lotus japonicus HOM05D004670 ORTHO05D008020 3.6e-26 123.2 199 40.7
AT3G02650 Arabidopsis thaliana HOM05D004670 ORTHO05D008020 4.7e-26 122.9 276 35.1
CSS0025547 Camellia sinensis var. sinensis HOM05D004670 ORTHO05D008020 2.4e-25 120.6 146 48.6
HanXRQChr02g0056371 Helianthus annuus HOM05D004670 ORTHO05D008020 2.4e-25 120.6 160 40.6
Carub.0003s0177 Capsella rubella HOM05D004670 ORTHO05D008020 3.1e-25 120.2 322 30.7
PGR119G2020 Punica granatum HOM05D004670 ORTHO05D008020 5.3e-25 119.4 159 45.3
BolC1t05888H Brassica oleracea HOM05D004670 ORTHO05D008020 6.9e-25 119.0 216 36.6
BNapus_Darmor_BZH_scaffold_122p00150 Brassica napus HOM05D004670 ORTHO05D008020 1.2e-24 118.2 190 39.5
BNapus_Darmor_BZH_scaffold_99p00180 Brassica napus HOM05D004670 ORTHO05D008020 2.0e-24 117.5 234 35.0
A03p33060 Brassica napus HOM05D004670 ORTHO05D008020 2.6e-24 117.1 156 44.2
BraA03t12476Z Brassica rapa HOM05D004670 ORTHO05D008020 2.6e-24 117.1 156 44.2
PSO675G7837 Papaver somniferum HOM05D004670 ORTHO05D008020 2.6e-24 117.1 191 37.2
HanXRQChr16g0532601 Helianthus annuus HOM05D004670 ORTHO05D008020 7.6e-24 115.5 218 34.4
BcaC01g04430 Brassica carinata HOM05D004670 ORTHO05D008020 1.3e-23 114.8 177 41.2
BolC3t16289H Brassica oleracea HOM05D004670 ORTHO05D008020 1.3e-23 114.8 177 41.2
DCAR_024376 Daucus carota HOM05D004670 ORTHO05D008020 1.3e-23 114.8 212 38.7
AUR62044648 Chenopodium quinoa HOM05D004670 ORTHO05D008020 1.7e-23 114.4 173 39.3
BraSC246t45824Z Brassica rapa HOM05D004670 ORTHO05D008020 2.9e-23 113.6 245 34.7
C03p40240 Brassica napus HOM05D004670 ORTHO05D008020 4.9e-23 112.8 156 42.9
Medtr3g081310 Medicago truncatula HOM05D004670 ORTHO05D008020 6.4e-23 112.5 176 39.8
ATR0743G160 Amborella trichopoda HOM05D004670 ORTHO05D008020 8.4e-23 112.1 251 33.1
ECA246G0724 Erigeron canadensis HOM05D004670 ORTHO05D008020 2.4e-22 110.5 152 42.1
Lalb_Chr13g0290441 Lupinus albus HOM05D004670 ORTHO05D008020 3.2e-22 110.2 191 37.7
ECA236G4653 Erigeron canadensis HOM05D004670 ORTHO05D008020 4.2e-22 109.8 157 42.7
HPP92_012838 Vanilla planifolia HOM05D004670 ORTHO05D008020 3.5e-21 106.7 167 39.5
Cpa.g.sc71.10 Carica papaya HOM05D000609 ORTHO05D000462 1.4e-17 94.7 76 65.8
BcaB04g19393 Brassica carinata HOM05D004670 ORTHO05D008020 5.3e-17 92.8 234 31.2
Cpa.g.sc2.80 Carica papaya HOM05D008870 ORTHO05D010906 8.4e-15 85.5 68 54.4
Cpa.g.sc56.5 Carica papaya HOM05D008870 ORTHO05D010906 4.6e-13 79.7 74 52.7
Cpa.g.sc9.44 Carica papaya HOM05D008870 ORTHO05D010906 1.5e-11 74.7 71 50.7
AUR62000265 Chenopodium quinoa HOM05D004670 ORTHO05D008020 7.4e-11 72.4 162 34.6
Cpa.g.sc24.62 Carica papaya HOM05D008870 ORTHO05D010906 2.1e-10 70.9 69 47.8
Zm00001eb144640 Zea mays HOM05D004670 ORTHO05D008020 4.8e-10 69.7 153 32.7
Cpa.g.sc42.37 Carica papaya HOM05D008870 ORTHO05D010906 1.1e-09 68.6 46 67.4
SEGI_06910 Sequoiadendron giganteum HOM05D004670 ORTHO05D008020 2.4e-09 67.4 177 27.7
Cpa.g.sc9.320 Carica papaya HOM05D008870 ORTHO05D010906 5.3e-09 66.2 77 48.1
Thecc.09G224400 Theobroma cacao HOM05D004670 ORTHO05D008020 2.0e-08 64.3 112 36.6
Cpa.g.sc10.136 Carica papaya HOM05D008870 ORTHO05D010906 1.7e-07 61.2 83 42.2
Cpa.g.sc309.3 Carica papaya HOM05D001083 ORTHO05D006562 1.7e-07 61.2 54 51.9
TPR.G5228 Trifolium pratense HOM05D002798 ORTHO05D003052 1.7e-07 61.2 123 35.8
Cpa.g.sc43.23 Carica papaya HOM05D008870 ORTHO05D010906 2.2e-07 60.8 61 50.8
AUR62008837 Chenopodium quinoa HOM05D004670 ORTHO05D008020 2.9e-07 60.5 53 52.8
Lj6g0018960 Lotus japonicus HOM05D004670 ORTHO05D008020 2.9e-07 60.5 182 32.4
Cpa.g.sc300.2 Carica papaya HOM05D004670 ORTHO05D010906 3.8e-07 60.1 54 53.7
Cpa.g.sc119.32 Carica papaya HOM05D008870 ORTHO05D010906 6.4e-07 59.3 54 50.0
Cpa.g.sc13.22 Carica papaya HOM05D000911 ORTHO05D010906 6.4e-07 59.3 79 41.8
Cpa.g.sc8.320 Carica papaya HOM05D008870 ORTHO05D010906 6.4e-07 59.3 70 48.6
Cfa008586 Carpinus fangiana HOM05D000424 ORTHO05D000355 8.4e-07 58.9 157 27.4
CiPaw.06G013000 Carya illinoinensis HOM05D000424 ORTHO05D000355 1.4e-06 58.2 142 26.8
Cpa.g.sc23.138 Carica papaya HOM05D000004 ORTHO05D000002 3.2e-06 57.0 56 51.8
Haze_11026 Corylus avellana HOM05D000424 ORTHO05D000355 3.2e-06 57.0 156 26.3
Cpa.g.sc65.114 Carica papaya HOM05D008870 ORTHO05D010906 7.1e-06 55.8 57 47.4
TPR.G25089 Trifolium pratense HOM05D004670 ORTHO05D014137 9.3e-06 55.5 139 33.8
TPR.G5188 Trifolium pratense HOM05D004670 ORTHO05D008020 9.3e-06 55.5 181 32.0


User provided reference genes

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