Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc343.3 Carica papaya HOM05D005513 ORTHO05D006848 4.8e-177 624.4 314 100.0
Atru.chr4.1482 Acer truncatum HOM05D005513 ORTHO05D006848 3.8e-150 535.0 314 83.8
Gohir.D10G121000 Gossypium hirsutum HOM05D005513 ORTHO05D006848 3.8e-150 535.0 314 83.8
Gorai.011G132900 Gossypium raimondii HOM05D005513 ORTHO05D006848 3.8e-150 535.0 314 83.8
Thecc.04G162400 Theobroma cacao HOM05D005513 ORTHO05D006848 8.4e-150 533.9 314 84.7
Gohir.A10G146000 Gossypium hirsutum HOM05D005513 ORTHO05D006848 9.3e-149 530.4 314 82.8
Cfa015273 Carpinus fangiana HOM05D005513 ORTHO05D006848 2.7e-148 528.9 314 84.1
Duzib151G0764 Durio zibethinus HOM05D005513 ORTHO05D006848 1.8e-147 526.2 314 82.8
Prupe.7G267200 Prunus persica HOM05D005513 ORTHO05D006848 6.7e-147 524.2 314 83.1
Manes.05G132000 Manihot esculenta HOM05D005513 ORTHO05D006848 2.5e-146 522.3 314 81.8
Sed0010820 Sechium edule HOM05D005513 ORTHO05D006848 2.5e-146 522.3 309 83.8
Potri.019G099100 Populus trichocarpa HOM05D005513 ORTHO05D006848 4.3e-146 521.5 306 83.7
TWI38G0850 Tripterygium wilfordii HOM05D005513 ORTHO05D006848 5.7e-146 521.2 319 81.2
Nn7g37504 Nelumbo nucifera HOM05D005513 ORTHO05D006848 1.3e-145 520.0 314 80.6
Ciclev10021262m.g Citrus clementina HOM05D005513 ORTHO05D006848 1.6e-145 519.6 314 81.2
Atru.chr4.1511 Acer truncatum HOM05D005587 ORTHO05D007287 2.2e-145 519.2 305 83.9
CSS0036954 Camellia sinensis var. sinensis HOM05D005513 ORTHO05D006848 3.7e-145 518.5 315 81.3
Sabra19G0110200 Salix brachista HOM05D005513 ORTHO05D006848 4.8e-145 518.1 306 83.0
Actinidia11441 Actinidia chinensis HOM05D005513 ORTHO05D006848 8.2e-145 517.3 327 80.4
CiPaw.01G170000 Carya illinoinensis HOM05D005513 ORTHO05D006848 1.1e-144 516.9 314 81.2
RcHm_v2.0_Chr2g0085091 Rosa chinensis HOM05D005513 ORTHO05D006848 1.1e-144 516.9 314 82.5
QL10p057731 Quercus lobata HOM05D005513 ORTHO05D006848 1.8e-144 516.2 313 81.8
COL.COLO4_08197 Corchorus olitorius HOM05D005513 ORTHO05D006848 2.4e-144 515.8 321 80.4
CANSAT56G3287 Cannabis sativa HOM05D005513 ORTHO05D006848 5.3e-144 514.6 315 81.9
FAN26G1480 Fragaria x ananassa HOM05D005513 ORTHO05D006848 9.0e-144 513.8 314 81.2
PGR042G2305 Punica granatum HOM05D005513 ORTHO05D006848 1.5e-143 513.1 316 79.7
FAN23G0174 Fragaria x ananassa HOM05D005513 ORTHO05D006848 5.9e-143 511.1 314 80.9
FvH4_1g00490 Fragaria vesca HOM05D005513 ORTHO05D006848 1.7e-142 509.6 314 80.6
GSVIVG01038190001 Vitis vinifera HOM05D005513 ORTHO05D006848 1.7e-142 509.6 315 80.6
vmacro15699 Vaccinium macrocarpon HOM05D005513 ORTHO05D006848 2.5e-141 505.8 326 78.5
TAR362G0948 Trochodendron aralioides HOM05D005513 ORTHO05D006848 3.2e-141 505.4 314 79.6
Atru.BG.100.p Acer truncatum HOM05D005513 ORTHO05D006848 2.1e-140 502.7 283 86.6
VMungo0251G3259 Vigna mungo HOM05D005513 ORTHO05D006848 2.1e-140 502.7 314 79.6
Phvul.003G059600 Phaseolus vulgaris HOM05D005513 ORTHO05D006848 2.7e-140 502.3 314 79.3
CAN.G575.118 Capsicum annuum HOM05D005513 ORTHO05D006848 3.6e-140 501.9 300 83.0
CAN.G1579.15 Capsicum annuum HOM05D005513 ORTHO05D006848 6.1e-140 501.1 300 83.0
CAN.G2177.12 Capsicum annuum HOM05D005513 ORTHO05D006848 1.0e-139 500.4 300 82.7
Eucgr.L00024 Eucalyptus grandis HOM05D005513 ORTHO05D006848 2.3e-139 499.2 316 78.2
Nitab4.5_0001936g0090 Nicotiana tabacum HOM05D005513 ORTHO05D006848 3.9e-139 498.4 300 81.0
Sed0015185 Sechium edule HOM05D005513 ORTHO05D006848 3.9e-139 498.4 306 80.4
FAN28G1408 Fragaria x ananassa HOM05D005513 ORTHO05D006848 5.1e-139 498.0 334 75.7
PSO675G7310 Papaver somniferum HOM05D005513 ORTHO05D006848 8.8e-139 497.3 316 77.5
Cc09_g04220 Coffea canephora HOM05D005513 ORTHO05D006848 1.1e-138 496.9 300 80.0
Lalb_Chr16g0384361 Lupinus albus HOM05D005513 ORTHO05D006848 1.5e-138 496.5 316 77.8
EL10Ac3g06111 Beta vulgaris HOM05D005513 ORTHO05D006848 3.3e-138 495.4 316 78.5
QL10p057421 Quercus lobata HOM05D005513 ORTHO05D006848 3.3e-138 495.4 371 70.1
TPR.G23516 Trifolium pratense HOM05D005513 ORTHO05D006848 4.3e-138 495.0 300 80.7
Ca_18624_v3 Cicer arietinum L. HOM05D005513 ORTHO05D006848 1.7e-137 493.0 300 80.3
PGSC0003DMG400004444 Solanum tuberosum HOM05D005513 ORTHO05D006848 1.7e-137 493.0 301 80.4
HanXRQChr10g0285921 Helianthus annuus HOM05D005513 ORTHO05D006848 2.2e-137 492.7 299 79.6
Lj4g0013603 Lotus japonicus HOM05D005513 ORTHO05D006848 2.8e-137 492.3 300 80.3
Medtr4g087590 Medicago truncatula HOM05D005513 ORTHO05D006848 2.8e-137 492.3 300 80.3
Sopen12g019010 Solanum pennellii HOM05D005513 ORTHO05D006848 8.2e-137 490.7 301 80.1
Glyma.07G206300 Glycine max HOM05D005513 ORTHO05D006848 1.1e-136 490.3 315 77.1
Glyma.02G138700 Glycine max HOM05D005513 ORTHO05D006848 1.4e-136 490.0 300 79.7
Nitab4.5_0008882g0020 Nicotiana tabacum HOM05D005513 ORTHO05D006848 1.4e-136 490.0 300 79.0
SalBow3G2273 Salvia bowleyana HOM05D005513 ORTHO05D006848 1.8e-136 489.6 300 80.7
PSO541G5416 Papaver somniferum HOM05D005513 ORTHO05D006848 2.4e-136 489.2 316 76.9
RhsimUnG0015400 Rhododendron simsii HOM05D005513 ORTHO05D006848 2.4e-136 489.2 349 72.8
AUR62023772 Chenopodium quinoa HOM05D005513 ORTHO05D006848 3.1e-136 488.8 299 80.6
AUR62002417 Chenopodium quinoa HOM05D005513 ORTHO05D006848 5.3e-136 488.0 299 80.3
Migut.F01838 Erythranthe guttata HOM05D005513 ORTHO05D006848 1.2e-135 486.9 309 78.6
CSS0028849 Camellia sinensis var. sinensis HOM05D005513 ORTHO05D006848 2.0e-135 486.1 283 84.5
Peaxi162Scf00544g00118 Petunia axillaris HOM05D005513 ORTHO05D006848 4.5e-135 485.0 300 79.0
arahy.Tifrunner.gnm1.ann1.GWB5D5 Arachis hypogaea HOM05D005513 ORTHO05D006848 7.7e-135 484.2 314 76.4
CAN.G575.103 Capsicum annuum HOM05D005513 ORTHO05D006848 2.2e-134 482.6 299 80.6
CsaV3_6G032350 Cucumis sativus L. HOM05D005513 ORTHO05D006848 2.2e-134 482.6 309 79.3
arahy.Tifrunner.gnm1.ann1.GC3WT6 Arachis hypogaea HOM05D005513 ORTHO05D006848 6.5e-134 481.1 314 75.8
Psat7g119320 Pisum sativum HOM05D005513 ORTHO05D006848 6.5e-134 481.1 300 79.3
THA.LOC104801693 Tarenaya hassleriana HOM05D005513 ORTHO05D006848 4.2e-133 478.4 302 75.5
Hund12358 Selenicereus undatus HOM05D005513 ORTHO05D006848 5.5e-133 478.0 313 73.8
MSTRG.8188 Avicennia marina HOM05D005513 ORTHO05D006848 9.4e-133 477.2 306 78.4
Oeu057533.3 Olea europaea HOM05D005513 ORTHO05D006848 9.4e-133 477.2 337 73.0
Rhsim02G0085900 Rhododendron simsii HOM05D005513 ORTHO05D006848 1.2e-132 476.9 367 69.2
Peaxi162Scf00544g00117 Petunia axillaris HOM05D005513 ORTHO05D006848 2.1e-132 476.1 300 77.3
MD15G1148400 Malus domestica HOM05D005513 ORTHO05D006848 2.7e-132 475.7 283 83.0
Eucgr.G01603 Eucalyptus grandis HOM05D005513 ORTHO05D006848 7.9e-132 474.2 316 75.6
Lsat_1_v5_gn_2_40261 Lactuca sativa HOM05D005513 ORTHO05D006848 1.4e-131 473.4 336 70.8
ATR0743G005 Amborella trichopoda HOM05D005513 ORTHO05D006848 8.8e-131 470.7 314 73.2
Ca_18630_v3 Cicer arietinum L. HOM05D005513 ORTHO05D006848 3.3e-130 468.8 310 75.8
Aa31LG3G16700 Aethionema arabicum HOM05D005513 ORTHO05D006848 4.4e-130 468.4 302 74.8
CAN.G2107.3 Capsicum annuum HOM05D005513 ORTHO05D006848 1.8e-128 463.0 298 79.2
HPP92_011686 Vanilla planifolia HOM05D005513 ORTHO05D006848 1.0e-126 457.2 321 71.0
Aqoxy2G04162 Aquilegia oxysepala HOM05D005513 ORTHO05D006848 1.7e-126 456.4 300 74.3
AL6G20970 Arabidopsis lyrata HOM05D005513 ORTHO05D006848 2.2e-126 456.1 302 72.2
HPP92_011691 Vanilla planifolia HOM05D005513 ORTHO05D006848 3.8e-126 455.3 321 70.7
Os08g0542600 Oryza sativa ssp. japonica HOM05D005513 ORTHO05D006848 5.0e-126 454.9 300 72.7
Lj6A199G41 Lonicera japonica HOM05D005513 ORTHO05D006848 8.5e-126 454.1 286 79.4
ECA238G0802 Erigeron canadensis HOM05D005513 ORTHO05D006848 1.1e-125 453.8 291 77.0
Thhalv10014198m.g Eutrema salsugineum HOM05D005513 ORTHO05D006848 1.1e-125 453.8 301 73.4
CARHR202830 Cardamine hirsuta HOM05D005513 ORTHO05D006848 1.5e-125 453.4 303 72.9
BcaB05g21485 Brassica carinata HOM05D005513 ORTHO05D006848 4.2e-125 451.8 302 72.8
C02p04480 Brassica napus HOM05D005513 ORTHO05D006848 4.2e-125 451.8 302 72.8
BraA02t05034Z Brassica rapa HOM05D005513 ORTHO05D006848 5.5e-125 451.4 302 72.5
Carub.0006s0894 Capsella rubella HOM05D005513 ORTHO05D006848 7.2e-125 451.1 303 71.6
A02p00500 Brassica napus HOM05D005513 ORTHO05D006848 9.4e-125 450.7 302 72.8
Sp6g32980 Schrenkiella parvula HOM05D005513 ORTHO05D006848 9.4e-125 450.7 301 72.8
MELO3C011447.2 Cucumis melo HOM05D005513 ORTHO05D006848 4.7e-124 448.4 345 67.8
BolC2t06408H Brassica oleracea HOM05D005513 ORTHO05D006848 6.1e-124 448.0 302 72.2
AT5G10460 Arabidopsis thaliana HOM05D005513 ORTHO05D006848 1.8e-123 446.4 302 70.9
Zm00001eb037350 Zea mays HOM05D005513 ORTHO05D006848 4.8e-121 438.3 298 70.8
BcaC03g13313 Brassica carinata HOM05D005513 ORTHO05D006848 2.6e-119 432.6 302 70.9
SEGI_26385 Sequoiadendron giganteum HOM05D005513 ORTHO05D006848 3.8e-118 428.7 315 63.2
ClCG08G010170 Citrullus lanatus HOM05D005513 ORTHO05D006848 2.1e-116 422.9 309 71.2
Dinv33223 Davidia involucrata HOM05D005513 ORTHO05D006848 8.0e-116 421.0 250 83.2
Solyc12g038820.1 Solanum lycopersicum HOM05D005513 ORTHO05D006848 4.8e-113 411.8 251 80.9
CAN.G575.78 Capsicum annuum HOM05D005513 ORTHO05D006848 2.7e-111 406.0 250 80.4
CAN.G2075.11 Capsicum annuum HOM05D005513 ORTHO05D006848 4.5e-111 405.2 299 69.9
SGA_v2.0_scaffold122G33215 Striga asiatica HOM05D005513 ORTHO05D006848 2.2e-110 402.9 325 65.8
Nitab4.5_0002604g0050 Nicotiana tabacum HOM05D005513 ORTHO05D006848 1.5e-109 400.2 293 70.6
Sc19g0006410 Simmondsia chinensis HOM05D005513 ORTHO05D006848 1.5e-109 400.2 250 79.6
Nitab4.5_0000241g0250 Nicotiana tabacum HOM05D005513 ORTHO05D006848 2.8e-100 369.4 259 72.2
SMO119G0305 Selaginella moellendorffii HOM05D005513 ORTHO05D006848 8.9e-99 364.4 300 59.0
DCAR_005450 Daucus carota HOM05D005513 ORTHO05D006848 9.8e-98 360.9 227 78.4
Haze_01354 Corylus avellana HOM05D005513 ORTHO05D006848 2.9e-97 359.4 315 63.2
Lj6A58T47 Lonicera japonica HOM05D005513 ORTHO05D006848 9.8e-90 334.3 211 79.6
CAN.G2075.13 Capsicum annuum HOM05D005513 ORTHO05D006848 1.2e-87 327.4 235 72.3
CAN.G181.20 Capsicum annuum HOM05D005513 ORTHO05D006848 7.3e-77 291.6 191 77.5
MCO04G248 Micromonas commoda HOM05D005513 ORTHO05D006848 1.5e-74 283.9 331 47.4
Medtr4g087600 Medicago truncatula HOM05D005513 ORTHO05D006848 2.6e-74 283.1 208 68.3
AUR62021707 Chenopodium quinoa HOM05D005513 ORTHO05D006848 2.4e-72 276.6 186 74.7
Gorai.004G148900 Gossypium raimondii HOM05D005513 ORTHO05D006848 2.5e-61 240.0 164 75.6
PRCOL_00005454 Prasinoderma coloniale HOM05D005513 ORTHO05D006848 2.1e-60 236.9 321 43.3
Lj6A193T36 Lonicera japonica HOM05D005513 ORTHO05D006848 3.6e-60 236.1 178 71.3
CAN.G1703.16 Capsicum annuum HOM05D005513 ORTHO05D006848 4.4e-58 229.2 142 81.0
CAN.G1565.3 Capsicum annuum HOM05D005513 ORTHO05D006848 2.1e-55 220.3 300 44.3
Cre14.g609300 Chlamydomonas reinhardtii HOM05D005513 ORTHO05D006848 2.5e-53 213.4 316 38.9
SHI25989 Sapria himalayana HOM05D000105 ORTHO05D000023 1.4e-51 207.6 170 61.8
Lj6A58T48 Lonicera japonica HOM05D005513 ORTHO05D006848 1.1e-40 171.4 136 66.2
Lj6A203T27 Lonicera japonica HOM05D005513 ORTHO05D006848 1.2e-39 167.9 100 81.0
Cc00_g04390 Coffea canephora HOM05D005513 ORTHO05D006848 7.9e-39 165.2 109 70.6
CAN.G1703.15 Capsicum annuum HOM05D005513 ORTHO05D006848 2.3e-30 137.1 91 74.7
Lj6A203G20 Lonicera japonica HOM05D005513 ORTHO05D006848 4.3e-29 132.9 176 45.5
CAN.G12630.1 Capsicum annuum HOM05D005513 ORTHO05D006848 1.9e-24 117.5 79 72.2
RcHm_v2.0_Chr2g0085051 Rosa chinensis HOM05D005513 ORTHO05D343180 3.2e-24 116.7 85 71.8
EL10Ac7g16782 Beta vulgaris HOM05D005513 ORTHO05D006848 1.4e-22 111.3 67 79.1
Lj6C203G2 Lonicera japonica HOM05D005513 ORTHO05D006848 3.7e-20 103.2 76 71.1
Lj6A192T18 Lonicera japonica HOM05D005513 ORTHO05D006848 1.0e-14 85.1 57 71.9
Lj6A230T44 Lonicera japonica HOM05D005513 ORTHO05D006848 3.9e-14 83.2 53 81.1
SHI25988 Sapria himalayana HOM05D000105 ORTHO05D000023 1.7e-12 77.8 81 50.6
SHI25987 Sapria himalayana HOM05D005513 ORTHO05D006848 8.5e-09 65.5 49 57.1
Pp3s30_940 Physcomitrium patens HOM05D001730 ORTHO05D308549 2.1e-07 60.8 283 24.4


User provided reference genes

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