Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc3420.1 Carica papaya HOM05D000325 ORTHO05D034071 3.1e-61 238.4 132 100.0
Haze_17491 Corylus avellana HOM05D000325 ORTHO05D000583 3.9e-24 115.2 128 55.5
Thecc.02G228600 Theobroma cacao HOM05D000325 ORTHO05D000583 5.7e-23 111.3 131 53.4
Cfa018589 Carpinus fangiana HOM05D000325 ORTHO05D000583 4.8e-22 108.2 132 53.8
Manes.14G103100 Manihot esculenta HOM05D000325 ORTHO05D000583 9.1e-21 104.0 131 54.2
Gohir.A03G147400 Gossypium hirsutum HOM05D000325 ORTHO05D000583 1.5e-20 103.2 131 55.0
Gohir.D02G170600 Gossypium hirsutum HOM05D000325 ORTHO05D000583 2.2e-19 99.4 131 53.4
Gorai.005G191700 Gossypium raimondii HOM05D000325 ORTHO05D000583 8.5e-19 97.4 131 52.7
Atru.chr11.98 Acer truncatum HOM05D000325 ORTHO05D000583 1.4e-18 96.7 134 53.0
Ciclev10015906m.g Citrus clementina HOM05D000325 ORTHO05D000583 3.6e-17 92.0 133 49.6
Sabra08G0092000 Salix brachista HOM05D000325 ORTHO05D000583 3.6e-17 92.0 131 50.4
COL.COLO4_35832 Corchorus olitorius HOM05D000325 ORTHO05D000583 3.9e-16 88.6 130 52.3
Psat6g227840 Pisum sativum HOM05D000325 ORTHO05D000583 3.9e-16 88.6 132 45.5
CiPaw.15G086000 Carya illinoinensis HOM05D000325 ORTHO05D000583 8.8e-16 87.4 134 50.0
TAR374G1005 Trochodendron aralioides HOM05D000325 ORTHO05D000583 2.0e-15 86.3 129 45.7
TPR.G18825 Trifolium pratense HOM05D000325 ORTHO05D000583 2.6e-15 85.9 132 44.7
Medtr1g110690 Medicago truncatula HOM05D000325 ORTHO05D000583 2.8e-14 82.4 132 45.5
arahy.Tifrunner.gnm1.ann1.029DEV Arachis hypogaea HOM05D000325 ORTHO05D000583 3.7e-14 82.0 132 43.9
arahy.Tifrunner.gnm1.ann1.PM3ZEV Arachis hypogaea HOM05D000325 ORTHO05D000583 4.8e-14 81.6 132 44.7
Ca_03056_v3 Cicer arietinum L. HOM05D000286 ORTHO05D000170 2.4e-13 79.3 132 43.9
Ca_11168_v3 Cicer arietinum L. HOM05D000286 ORTHO05D000170 2.4e-13 79.3 132 43.9
TWI75G1137 Tripterygium wilfordii HOM05D000325 ORTHO05D000583 5.3e-13 78.2 132 44.7
Potri.008G121300 Populus trichocarpa HOM05D000325 ORTHO05D000583 1.2e-12 77.0 122 45.9
GSVIVG01011889001 Vitis vinifera HOM05D000325 ORTHO05D000583 1.7e-11 73.2 126 43.7
Eucgr.G02315 Eucalyptus grandis HOM05D000325 ORTHO05D000583 2.2e-11 72.8 124 41.9
Glyma.20G116300 Glycine max HOM05D000325 ORTHO05D000583 1.1e-10 70.5 129 41.9
Lj5g0023833 Lotus japonicus HOM05D000325 ORTHO05D000583 1.1e-10 70.5 125 44.0
Sabra10G0094100 Salix brachista HOM05D000325 ORTHO05D034071 2.5e-10 69.3 114 46.5
Dinv21079 Davidia involucrata HOM05D000286 ORTHO05D000583 9.4e-10 67.4 130 38.5
Lalb_Chr02g0145921 Lupinus albus HOM05D000325 ORTHO05D000583 1.6e-09 66.6 100 49.0
CANSAT01G2262 Cannabis sativa HOM05D000325 ORTHO05D000583 2.7e-09 65.9 122 45.1
Ah.03g137570 Amaranthus hybridus HOM05D000325 ORTHO05D000583 3.6e-09 65.5 131 39.7
CSS0011429 Camellia sinensis var. sinensis HOM05D000325 ORTHO05D000583 3.6e-09 65.5 130 42.3
Glyma.10G273700 Glycine max HOM05D000325 ORTHO05D000583 4.7e-09 65.1 129 41.1
Prupe.1G312000 Prunus persica HOM05D000325 ORTHO05D000583 6.1e-09 64.7 116 42.2
MD13G1040800 Malus domestica HOM05D000325 ORTHO05D000583 8.0e-09 64.3 116 43.1
Phvul.007G027900 Phaseolus vulgaris HOM05D000325 ORTHO05D000583 8.0e-09 64.3 129 41.9
AL1G39910 Arabidopsis lyrata HOM05D000325 ORTHO05D000583 1.0e-08 63.9 134 40.3
CSS0026499 Camellia sinensis var. sinensis HOM05D000325 ORTHO05D000583 2.3e-08 62.8 130 41.5
ClCG03G009610 Citrullus lanatus HOM05D000325 ORTHO05D000583 3.0e-08 62.4 132 40.2
PGR119G0378 Punica granatum HOM05D000325 ORTHO05D000583 3.0e-08 62.4 132 40.9
BcaB03g14041 Brassica carinata HOM05D000325 ORTHO05D000583 8.8e-08 60.8 134 39.6
CSS0026615 Camellia sinensis var. sinensis HOM05D000325 ORTHO05D000583 1.2e-07 60.5 126 38.9
Rhsim09G0107300 Rhododendron simsii HOM05D000286 ORTHO05D000170 1.2e-07 60.5 134 38.8
Thhalv10008210m.g Eutrema salsugineum HOM05D000325 ORTHO05D000583 1.5e-07 60.1 134 38.8
Sp1g22800 Schrenkiella parvula HOM05D000325 ORTHO05D000583 1.5e-07 60.1 123 41.5
EL10Ac6g14390 Beta vulgaris HOM05D000325 ORTHO05D000583 2.0e-07 59.7 132 37.9
AUR62035210 Chenopodium quinoa HOM05D000002 ORTHO05D000001 2.0e-07 59.7 131 39.7
Carub.0001s2508 Capsella rubella HOM05D000325 ORTHO05D000583 3.3e-07 58.9 122 41.0
MD16G1042100 Malus domestica HOM05D000325 ORTHO05D000583 3.3e-07 58.9 116 40.5
MELO3C003018.2 Cucumis melo HOM05D000325 ORTHO05D000583 4.4e-07 58.5 133 39.8
AT1G25420 Arabidopsis thaliana HOM05D000325 ORTHO05D000583 7.5e-07 57.8 123 38.2
Actinidia16657 Actinidia chinensis HOM05D000325 ORTHO05D000583 1.7e-06 56.6 126 39.7
Sed0026334 Sechium edule HOM05D000325 ORTHO05D000583 1.7e-06 56.6 130 40.0
VMungo0720G0298 Vigna mungo HOM05D000325 ORTHO05D000583 2.2e-06 56.2 128 39.1
CARHR026070 Cardamine hirsuta HOM05D000325 ORTHO05D000583 2.8e-06 55.8 121 40.5
SalBow8G1572 Salvia bowleyana HOM05D000325 ORTHO05D000583 3.7e-06 55.5 125 36.0
SalBow8G2708 Salvia bowleyana HOM05D000325 ORTHO05D000583 3.7e-06 55.5 125 36.0
C07p18680 Brassica napus HOM05D000325 ORTHO05D000583 6.3e-06 54.7 121 38.0
BolC7t42379H Brassica oleracea HOM05D000325 ORTHO05D000583 6.3e-06 54.7 121 38.0
Hma1.2p1_0061F.1_g033820 Hydrangea macrophylla HOM05D000325 ORTHO05D000583 8.2e-06 54.3 103 43.7
Sc04g0006350 Simmondsia chinensis HOM05D000325 ORTHO05D000583 8.2e-06 54.3 133 38.3


User provided reference genes

Program Settings