Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc340.4 Carica papaya HOM05D008015 ORTHO05D009180 5.1e-114 414.5 213 100.0
Thecc.04G053900 Theobroma cacao HOM05D008015 ORTHO05D009180 7.5e-25 118.2 190 45.3
Ciclev10012847m.g Citrus clementina HOM05D008015 ORTHO05D009180 1.6e-22 110.5 191 42.4
Potri.004G085100 Populus trichocarpa HOM05D008015 ORTHO05D009180 5.9e-22 108.6 199 43.7
Duzib268G1603 Durio zibethinus HOM05D008015 ORTHO05D009180 7.8e-22 108.2 178 41.6
TAR371G1005 Trochodendron aralioides HOM05D008015 ORTHO05D009180 1.3e-21 107.5 183 43.7
QL02p059324 Quercus lobata HOM05D008015 ORTHO05D009180 2.3e-21 106.7 203 42.9
Manes.02G078100 Manihot esculenta HOM05D008015 ORTHO05D009180 4.3e-20 102.4 202 41.1
Nn4g24386 Nelumbo nucifera HOM05D008015 ORTHO05D009180 1.6e-19 100.5 169 45.0
Sabra17G0109400 Salix brachista HOM05D008015 ORTHO05D009180 8.0e-19 98.2 200 40.0
VMungo0647G1978 Vigna mungo HOM05D008015 ORTHO05D009180 2.3e-18 96.7 190 38.9
CSS0009801 Camellia sinensis var. sinensis HOM05D008015 ORTHO05D009180 6.8e-18 95.1 174 44.8
CSS0018355 Camellia sinensis var. sinensis HOM05D008015 ORTHO05D009180 6.8e-18 95.1 174 44.8
LjContig00141g0001505 Lotus japonicus HOM05D008015 ORTHO05D009180 6.8e-18 95.1 200 38.5
MD09G1270500 Malus domestica HOM05D008015 ORTHO05D009180 6.8e-18 95.1 218 37.6
Potri.017G131300 Populus trichocarpa HOM05D008015 ORTHO05D009180 8.9e-18 94.7 193 40.4
Glyma.14G213100 Glycine max HOM05D008015 ORTHO05D009180 1.5e-17 94.0 184 39.7
Lalb_Chr18g0053531 Lupinus albus HOM05D008015 ORTHO05D009180 4.4e-17 92.4 152 42.8
Oeu032314.1 Olea europaea HOM05D008015 ORTHO05D009180 7.5e-17 91.7 173 39.9
TAR629G2519 Trochodendron aralioides HOM05D008015 ORTHO05D009180 7.5e-17 91.7 179 41.9
Prupe.3G166400 Prunus persica HOM05D008015 ORTHO05D009180 9.8e-17 91.3 236 36.4
MSTRG.3702 Avicennia marina HOM05D008015 ORTHO05D009180 2.2e-16 90.1 194 38.1
Cfa007792 Carpinus fangiana HOM05D008015 ORTHO05D009180 2.2e-16 90.1 212 39.2
Cc07_g13270 Coffea canephora HOM05D008015 ORTHO05D009180 2.2e-16 90.1 185 37.3
Glyma.18G041300 Glycine max HOM05D008015 ORTHO05D009180 3.7e-16 89.4 155 43.2
DCAR_014163 Daucus carota HOM05D008015 ORTHO05D009180 2.4e-15 86.7 207 33.8
Lalb_Chr15g0084981 Lupinus albus HOM05D008015 ORTHO05D009180 3.2e-15 86.3 198 40.4
Medtr5g077940 Medicago truncatula HOM05D008015 ORTHO05D009180 1.0e-13 81.3 200 34.5
MELO3C022825.2 Cucumis melo HOM05D008015 ORTHO05D009180 2.3e-13 80.1 183 37.2
MBI13_g45895_MAGBIO Magnolia biondii HOM05D008015 ORTHO05D009180 5.0e-13 79.0 179 35.2
PSO478G3758 Papaver somniferum HOM05D008015 ORTHO05D009180 1.1e-12 77.8 189 38.1
Lalb_Chr17g0346041 Lupinus albus HOM05D008015 ORTHO05D009180 1.5e-12 77.4 173 37.0
TPR.G30001 Trifolium pratense HOM05D008015 ORTHO05D009180 2.5e-12 76.6 169 35.5
CiPaw.03G073500 Carya illinoinensis HOM05D008015 ORTHO05D009180 7.3e-12 75.1 211 36.0
Nn3g18370 Nelumbo nucifera HOM05D008015 ORTHO05D009180 7.3e-12 75.1 186 37.1
MBI13_g14024_MAGBIO Magnolia biondii HOM05D008015 ORTHO05D009180 9.5e-12 74.7 167 37.1
Medtr3g065210 Medicago truncatula HOM05D008015 ORTHO05D009180 9.5e-12 74.7 180 36.1
ClCG03G008850 Citrullus lanatus HOM05D008015 ORTHO05D009180 1.6e-11 73.9 186 34.4
Phvul.001G229400 Phaseolus vulgaris HOM05D008015 ORTHO05D009180 2.1e-11 73.6 147 37.4
TWI74G1025 Tripterygium wilfordii HOM05D008015 ORTHO05D009180 2.1e-11 73.6 157 37.6
Actinidia28799 Actinidia chinensis HOM05D008015 ORTHO05D009180 2.8e-11 73.2 158 39.9
MBI19_g08383_MAGBIO Magnolia biondii HOM05D008015 ORTHO05D009180 3.6e-11 72.8 171 38.0
Eucgr.F02874 Eucalyptus grandis HOM05D008015 ORTHO05D009180 4.7e-11 72.4 123 43.9
Actinidia35723 Actinidia chinensis HOM05D008015 ORTHO05D009180 6.2e-11 72.0 159 40.3
Glyma.11G215300 Glycine max HOM05D008015 ORTHO05D009180 6.2e-11 72.0 158 37.3
Sed0025761 Sechium edule HOM05D008015 ORTHO05D009180 6.2e-11 72.0 151 39.7
AL7G46310 Arabidopsis lyrata HOM05D009275 ORTHO05D009180 8.1e-11 71.6 178 37.1
Phvul.008G237600 Phaseolus vulgaris HOM05D008015 ORTHO05D009180 8.1e-11 71.6 139 40.3
CANSAT35G1526 Cannabis sativa HOM05D008015 ORTHO05D009180 1.4e-10 70.9 171 38.6
Psat2g045760 Pisum sativum HOM05D008015 ORTHO05D009180 1.4e-10 70.9 178 33.1
TWI77G0273 Tripterygium wilfordii HOM05D008015 ORTHO05D009180 1.4e-10 70.9 155 37.4
VMungo1383G2632 Vigna mungo HOM05D008015 ORTHO05D009180 1.4e-10 70.9 102 46.1
Rhsim10G0178500 Rhododendron simsii HOM05D008015 ORTHO05D009180 1.8e-10 70.5 211 33.6
SalBow5G5173 Salvia bowleyana HOM05D008015 ORTHO05D009180 1.8e-10 70.5 171 33.3
BraA04t16736Z Brassica rapa HOM05D009275 ORTHO05D009180 6.8e-10 68.6 172 37.8
A04p10720 Brassica napus HOM05D009275 ORTHO05D009180 8.9e-10 68.2 172 37.2
RcHm_v2.0_Chr3g0491241 Rosa chinensis HOM05D008015 ORTHO05D009180 8.9e-10 68.2 115 40.0
Sp5g21250 Schrenkiella parvula HOM05D009275 ORTHO05D009180 8.9e-10 68.2 174 38.5
FAN26G1918 Fragaria x ananassa HOM05D008015 ORTHO05D009180 1.5e-09 67.4 194 31.4
Aa31LG9G17500 Aethionema arabicum HOM05D009275 ORTHO05D009180 2.0e-09 67.0 184 33.7
Lsat_1_v5_gn_8_114880 Lactuca sativa HOM05D008015 ORTHO05D009180 2.0e-09 67.0 189 33.9
AT5G37550 Arabidopsis thaliana HOM05D009275 ORTHO05D009180 2.6e-09 66.6 187 34.2
CsaV3_5G023910 Cucumis sativus L. HOM05D009275 ORTHO05D009180 2.6e-09 66.6 169 33.7
Gohir.D07G078200 Gossypium hirsutum HOM05D008015 ORTHO05D009180 3.4e-09 66.2 157 36.3
FAN23G1273 Fragaria x ananassa HOM05D008015 ORTHO05D009180 4.4e-09 65.9 194 31.4
Carub.0007s3272 Capsella rubella HOM05D009275 ORTHO05D009180 5.8e-09 65.5 186 34.9
Thhalv10027910m.g Eutrema salsugineum HOM05D009275 ORTHO05D009180 9.8e-09 64.7 181 35.4
Gorai.001G082600 Gossypium raimondii HOM05D008015 ORTHO05D009180 9.8e-09 64.7 157 36.3
BcaB06g27100 Brassica carinata HOM05D009275 ORTHO05D009180 1.7e-08 63.9 174 35.6
BcaC02g09585 Brassica carinata HOM05D009275 ORTHO05D009180 1.7e-08 63.9 184 35.9
C04p44430 Brassica napus HOM05D009275 ORTHO05D009180 1.7e-08 63.9 184 35.9
BolC4t26014H Brassica oleracea HOM05D009275 ORTHO05D009180 1.7e-08 63.9 184 35.9
Sp7g04570 Schrenkiella parvula HOM05D009275 ORTHO05D009180 2.2e-08 63.5 172 34.9
FvH4_1g30203 Fragaria vesca HOM05D008015 ORTHO05D009180 2.9e-08 63.2 173 34.1
COL.COLO4_13422 Corchorus olitorius HOM05D009275 ORTHO05D009180 6.4e-08 62.0 190 33.2
PGR004G2766 Punica granatum HOM05D009275 ORTHO05D009180 6.4e-08 62.0 134 36.6
SGA_v2.0_scaffold45G17152 Striga asiatica HOM05D008015 ORTHO05D009180 6.4e-08 62.0 193 32.6
Aqoxy1G02179 Aquilegia oxysepala HOM05D008015 ORTHO05D009180 8.3e-08 61.6 182 35.7
CARHR215350 Cardamine hirsuta HOM05D009275 ORTHO05D009180 8.3e-08 61.6 176 31.2
MBI13_g24899_MAGBIO Magnolia biondii HOM05D008015 ORTHO05D009180 8.3e-08 61.6 75 46.7
CDE05G1037 Ceratophyllum demersum HOM05D008015 ORTHO05D009180 1.9e-07 60.5 183 31.7
Gohir.A07G073500 Gossypium hirsutum HOM05D008015 ORTHO05D009180 1.9e-07 60.5 160 38.1
THA.LOC104822277 Tarenaya hassleriana HOM05D009275 ORTHO05D009180 1.9e-07 60.5 177 33.9
Aa31LG2G2900 Aethionema arabicum HOM05D009275 ORTHO05D009180 3.2e-07 59.7 232 32.8
BcaC03g14735 Brassica carinata HOM05D009275 ORTHO05D009180 3.2e-07 59.7 199 32.7
C02p21840 Brassica napus HOM05D009275 ORTHO05D009180 4.1e-07 59.3 199 32.2
BolC2t08316H Brassica oleracea HOM05D009275 ORTHO05D009180 4.1e-07 59.3 199 32.2
ATR0753G067 Amborella trichopoda HOM05D008015 ORTHO05D009180 5.4e-07 58.9 130 32.3
A02p13520 Brassica napus HOM05D009275 ORTHO05D009180 5.4e-07 58.9 199 31.7
Thhalv10019019m.g Eutrema salsugineum HOM05D009275 ORTHO05D009180 7.1e-07 58.5 204 30.9
arahy.Tifrunner.gnm1.ann1.NRE7W4 Arachis hypogaea HOM05D009275 ORTHO05D009180 9.2e-07 58.2 161 35.4
BraA02t06410Z Brassica rapa HOM05D009275 ORTHO05D009180 1.2e-06 57.8 199 32.2
CARHR292200 Cardamine hirsuta HOM05D009275 ORTHO05D009180 2.1e-06 57.0 223 34.1
CDE05G0668 Ceratophyllum demersum HOM05D006178 ORTHO05D007504 2.1e-06 57.0 123 38.2
arahy.Tifrunner.gnm1.ann1.I66ZQ3 Arachis hypogaea HOM05D009275 ORTHO05D009180 4.6e-06 55.8 162 36.4


User provided reference genes

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