Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc34.88 Carica papaya HOM05D004263 ORTHO05D004931 0.0e+00 1535.0 771 100.0
Eucgr.K00914 Eucalyptus grandis HOM05D004263 ORTHO05D004931 0.0e+00 1382.5 771 88.8
TWI75G0058 Tripterygium wilfordii HOM05D004263 ORTHO05D004931 0.0e+00 1380.5 771 88.1
CiPaw.03G169700 Carya illinoinensis HOM05D004263 ORTHO05D004931 0.0e+00 1376.7 772 88.6
Manes.12G082900 Manihot esculenta HOM05D004263 ORTHO05D004931 0.0e+00 1376.7 771 87.9
PGR142G2990 Punica granatum HOM05D004263 ORTHO05D004931 0.0e+00 1373.2 772 88.2
Ciclev10014147m.g Citrus clementina HOM05D004263 ORTHO05D004931 0.0e+00 1371.3 771 87.9
TAR627G0082 Trochodendron aralioides HOM05D004263 ORTHO05D004931 0.0e+00 1369.8 772 88.0
Prupe.3G231000 Prunus persica HOM05D004263 ORTHO05D004931 0.0e+00 1369.4 771 87.8
COL.COLO4_13682 Corchorus olitorius HOM05D004263 ORTHO05D004931 0.0e+00 1365.9 768 88.3
QL08p037295 Quercus lobata HOM05D004263 ORTHO05D004931 0.0e+00 1364.7 768 87.9
Gohir.A01G015400 Gossypium hirsutum HOM05D004263 ORTHO05D004931 0.0e+00 1362.1 771 86.9
Gorai.002G017100 Gossypium raimondii HOM05D004263 ORTHO05D004931 0.0e+00 1359.0 771 86.9
Gohir.D01G015400 Gossypium hirsutum HOM05D004263 ORTHO05D004931 0.0e+00 1357.0 771 86.9
Hma1.2p1_0565F.1_g179560 Hydrangea macrophylla HOM05D004263 ORTHO05D004931 0.0e+00 1356.3 772 87.6
Hma1.2p1_0565F.1_g179570 Hydrangea macrophylla HOM05D004263 ORTHO05D004931 0.0e+00 1356.3 772 87.6
Thecc.02G171500 Theobroma cacao HOM05D004263 ORTHO05D004931 0.0e+00 1352.0 771 86.5
GSVIVG01030005001 Vitis vinifera HOM05D004263 ORTHO05D004931 0.0e+00 1349.7 771 86.6
Potri.013G147600 Populus trichocarpa HOM05D004263 ORTHO05D004931 0.0e+00 1348.2 772 87.0
CSS0035062 Camellia sinensis var. sinensis HOM05D004263 ORTHO05D004931 0.0e+00 1347.8 773 86.9
MD14G1065300 Malus domestica HOM05D004263 ORTHO05D004931 0.0e+00 1345.5 772 86.3
Actinidia39296 Actinidia chinensis HOM05D004263 ORTHO05D004931 0.0e+00 1345.1 772 86.7
CSS0002238 Camellia sinensis var. sinensis HOM05D004263 ORTHO05D004931 0.0e+00 1344.7 781 85.8
Cfa010655 Carpinus fangiana HOM05D004263 ORTHO05D004931 0.0e+00 1343.9 771 86.0
RcHm_v2.0_Chr2g0161771 Rosa chinensis HOM05D004263 ORTHO05D004931 0.0e+00 1342.4 771 86.8
CSS0035503 Camellia sinensis var. sinensis HOM05D004263 ORTHO05D004931 0.0e+00 1342.0 772 86.0
CANSAT64G2398 Cannabis sativa HOM05D004263 ORTHO05D004931 0.0e+00 1342.0 771 86.1
FvH4_6g44560 Fragaria vesca HOM05D004263 ORTHO05D004931 0.0e+00 1339.3 771 86.4
Haze_13086 Corylus avellana HOM05D004263 ORTHO05D004931 0.0e+00 1332.0 821 81.5
MD17G1084700 Malus domestica HOM05D004263 ORTHO05D004931 0.0e+00 1331.6 771 85.5
Lalb_Chr22g0356351 Lupinus albus HOM05D004263 ORTHO05D004931 0.0e+00 1323.9 769 85.3
FAN14G1228 Fragaria x ananassa HOM05D004263 ORTHO05D004931 0.0e+00 1323.1 795 83.5
THA.LOC104809434 Tarenaya hassleriana HOM05D004263 ORTHO05D004931 0.0e+00 1323.1 772 84.5
FAN02G3638 Fragaria x ananassa HOM05D004263 ORTHO05D004931 0.0e+00 1319.3 795 83.4
Solyc06g005080.4 Solanum lycopersicum HOM05D004263 ORTHO05D004931 0.0e+00 1318.9 771 83.8
MBI02_g13236_MAGBIO Magnolia biondii HOM05D004263 ORTHO05D004931 0.0e+00 1318.5 778 84.4
CSS0005038 Camellia sinensis var. sinensis HOM05D004263 ORTHO05D004931 0.0e+00 1318.1 780 84.7
FAN09G1275 Fragaria x ananassa HOM05D004263 ORTHO05D004931 0.0e+00 1318.1 795 83.3
Sp1g11070 Schrenkiella parvula HOM05D004263 ORTHO05D004931 0.0e+00 1316.6 772 84.1
Nn2g15850 Nelumbo nucifera HOM05D004263 ORTHO05D004931 0.0e+00 1316.2 774 84.0
AL1G23830 Arabidopsis lyrata HOM05D004263 ORTHO05D004931 0.0e+00 1315.1 773 83.6
Thhalv10006686m.g Eutrema salsugineum HOM05D004263 ORTHO05D004931 0.0e+00 1314.7 772 83.5
Sopen06g001070 Solanum pennellii HOM05D004263 ORTHO05D004931 0.0e+00 1313.9 771 83.7
CsaV3_7G004120 Cucumis sativus L. HOM05D004263 ORTHO05D004931 0.0e+00 1313.1 770 84.4
Actinidia30490 Actinidia chinensis HOM05D004263 ORTHO05D004931 0.0e+00 1312.0 747 87.3
Rhsim04G0063000 Rhododendron simsii HOM05D004263 ORTHO05D004931 0.0e+00 1312.0 759 86.0
CARHR012770 Cardamine hirsuta HOM05D004263 ORTHO05D004931 0.0e+00 1310.4 773 83.4
DCAR_009724 Daucus carota HOM05D004263 ORTHO05D004931 0.0e+00 1309.7 771 84.3
A06p09160 Brassica napus HOM05D004263 ORTHO05D004931 0.0e+00 1309.3 774 83.5
Lj3g0003932 Lotus japonicus HOM05D004263 ORTHO05D004931 0.0e+00 1309.3 773 84.5
SGA_v2.0_scaffold90G27889 Striga asiatica HOM05D004263 ORTHO05D004931 0.0e+00 1309.3 779 84.0
Sabra13G0119200 Salix brachista HOM05D004263 ORTHO05D004931 0.0e+00 1308.1 757 86.4
BolC5t29815H Brassica oleracea HOM05D004263 ORTHO05D004931 0.0e+00 1307.0 774 83.2
Peaxi162Scf00255g01022 Petunia axillaris HOM05D004263 ORTHO05D004931 0.0e+00 1307.0 778 82.9
Sed0028127 Sechium edule HOM05D004263 ORTHO05D004931 0.0e+00 1306.6 768 83.9
BraA06t24102Z Brassica rapa HOM05D004263 ORTHO05D004931 0.0e+00 1306.2 784 82.4
Carub.0001s1218 Capsella rubella HOM05D004263 ORTHO05D004931 0.0e+00 1305.4 772 83.2
Psat2g144400 Pisum sativum HOM05D004263 ORTHO05D004931 0.0e+00 1305.0 772 84.5
Cc04_g12270 Coffea canephora HOM05D004263 ORTHO05D004931 0.0e+00 1303.9 768 83.9
vmacro09293 Vaccinium macrocarpon HOM05D004263 ORTHO05D004931 0.0e+00 1302.3 805 81.7
Migut.O00120 Erythranthe guttata HOM05D004263 ORTHO05D004931 0.0e+00 1302.0 772 83.8
Phvul.005G107700 Phaseolus vulgaris HOM05D004263 ORTHO05D004931 0.0e+00 1300.8 773 84.3
Glyma.13G301100 Glycine max HOM05D004263 ORTHO05D004931 0.0e+00 1299.3 770 84.3
AT1G12470 Arabidopsis thaliana HOM05D004263 ORTHO05D004931 0.0e+00 1296.2 772 82.5
Ca_01536_v3 Cicer arietinum L. HOM05D004263 ORTHO05D004931 0.0e+00 1295.8 772 84.1
Aqoxy1G01192 Aquilegia oxysepala HOM05D004263 ORTHO05D004931 0.0e+00 1294.6 773 83.6
C08p15450 Brassica napus HOM05D004263 ORTHO05D004931 0.0e+00 1293.1 785 81.8
C05p10740 Brassica napus HOM05D004263 ORTHO05D004931 0.0e+00 1292.7 777 82.2
BcaB03g13185 Brassica carinata HOM05D004263 ORTHO05D004931 0.0e+00 1291.2 772 82.9
A08p32810 Brassica napus HOM05D004263 ORTHO05D004931 0.0e+00 1290.4 785 81.7
BraA08t35204Z Brassica rapa HOM05D004263 ORTHO05D004931 0.0e+00 1290.4 785 81.7
arahy.Tifrunner.gnm1.ann1.RA2UAB Arachis hypogaea HOM05D004263 ORTHO05D004931 0.0e+00 1288.9 799 81.6
MSTRG.11470 Avicennia marina HOM05D004263 ORTHO05D004931 0.0e+00 1288.9 763 84.3
Oeu001693.1 Olea europaea HOM05D004263 ORTHO05D004931 0.0e+00 1288.5 772 83.4
Glyma.12G201100 Glycine max HOM05D004263 ORTHO05D004931 0.0e+00 1286.9 769 83.1
Medtr8g063380 Medicago truncatula HOM05D004263 ORTHO05D004931 0.0e+00 1283.1 788 82.2
PSO801G0468 Papaver somniferum HOM05D004263 ORTHO05D004931 0.0e+00 1280.4 773 83.3
Aa31LG1G2150 Aethionema arabicum HOM05D004263 ORTHO05D004931 0.0e+00 1276.5 780 82.1
PSO339G5244 Papaver somniferum HOM05D004263 ORTHO05D004931 0.0e+00 1271.1 770 82.9
ECA246G4434 Erigeron canadensis HOM05D004263 ORTHO05D004931 0.0e+00 1269.6 771 81.8
SalBow7G3995 Salvia bowleyana HOM05D004263 ORTHO05D004931 0.0e+00 1265.0 769 81.8
BolC8t49173H Brassica oleracea HOM05D004263 ORTHO05D004931 0.0e+00 1261.9 797 79.3
Duzib248G0991 Durio zibethinus HOM05D004263 ORTHO05D004931 0.0e+00 1261.1 771 82.6
arahy.Tifrunner.gnm1.ann1.0PC56D Arachis hypogaea HOM05D004263 ORTHO05D004931 0.0e+00 1253.8 861 75.4
HanXRQChr07g0200651 Helianthus annuus HOM05D004263 ORTHO05D004931 0.0e+00 1247.6 776 80.2
ClCG02G001300 Citrullus lanatus HOM05D004263 ORTHO05D004931 0.0e+00 1246.5 759 81.9
EL10As1g23122 Beta vulgaris HOM05D004263 ORTHO05D004931 0.0e+00 1243.0 772 79.7
Atru.chr6.3077 Acer truncatum HOM05D004263 ORTHO05D004931 0.0e+00 1241.9 711 86.5
Lsat_1_v5_gn_3_39980 Lactuca sativa HOM05D004263 ORTHO05D004931 0.0e+00 1231.5 763 80.3
Ah.11g047230 Amaranthus hybridus HOM05D004263 ORTHO05D004931 0.0e+00 1227.2 772 78.8
Haze_03591 Corylus avellana HOM05D004263 ORTHO05D004931 0.0e+00 1222.2 809 77.6
AUR62034472 Chenopodium quinoa HOM05D004263 ORTHO05D004931 0.0e+00 1207.2 772 78.1
Medtr5g026090 Medicago truncatula HOM05D004263 ORTHO05D004931 0.0e+00 1204.9 782 78.9
AUR62041769 Chenopodium quinoa HOM05D004263 ORTHO05D004931 0.0e+00 1196.0 772 78.1
HPP92_004167 Vanilla planifolia HOM05D004263 ORTHO05D004931 0.0e+00 1186.4 777 75.8
Lj1C736G5 Lonicera japonica HOM05D004263 ORTHO05D004931 0.0e+00 1175.2 762 78.6
Lj8C117G6 Lonicera japonica HOM05D004263 ORTHO05D004931 0.0e+00 1162.5 763 77.6
Os08g0178100 Oryza sativa ssp. japonica HOM05D004263 ORTHO05D004931 0.0e+00 1138.3 765 74.9
Sc08g0004410 Simmondsia chinensis HOM05D004263 ORTHO05D004931 0.0e+00 1124.4 679 81.4
BcaC05g25186 Brassica carinata HOM05D004263 ORTHO05D004931 0.0e+00 1119.0 631 87.2
CDE05G0585 Ceratophyllum demersum HOM05D004263 ORTHO05D004931 0.0e+00 1104.4 778 71.7
ATR0737G173 Amborella trichopoda HOM05D004263 ORTHO05D004931 0.0e+00 1089.7 782 71.4
CSS0039065 Camellia sinensis var. sinensis HOM05D004263 ORTHO05D004931 2.6e-301 1038.5 680 79.4
Cfa014543 Carpinus fangiana HOM05D004263 ORTHO05D004931 1.7e-289 999.2 568 87.1
Dinv23716 Davidia involucrata HOM05D004263 ORTHO05D004931 3.9e-289 998.0 558 88.9
Zm00001eb412950 Zea mays HOM05D004263 ORTHO05D004931 2.4e-286 988.8 664 74.8
unitig_0.g1433 Utricularia gibba HOM05D004263 ORTHO05D004931 6.4e-284 980.7 637 78.8
MELO3C018764.2 Cucumis melo HOM05D004263 ORTHO05D004931 3.4e-277 958.4 575 83.5
Pp3c14_1240 Physcomitrium patens HOM05D004263 ORTHO05D004931 1.8e-273 946.0 775 61.9
Mapoly0011s0120 Marchantia polymorpha HOM05D004263 ORTHO05D004931 1.1e-270 936.8 782 62.0
Oeu001695.1 Olea europaea HOM05D004263 ORTHO05D004931 1.4e-246 856.7 517 83.0
SMO239G0082 Selaginella moellendorffii HOM05D004263 ORTHO05D004931 5.9e-221 771.5 765 51.8
AagrBONN_evm.TU.Sc2ySwM_228.3812 Anthoceros agrestis HOM05D004263 ORTHO05D004931 1.7e-212 743.4 578 64.7
QL08p037237 Quercus lobata HOM05D004263 ORTHO05D004931 1.8e-185 653.7 429 78.3
Nitab4.5_0001514g0010 Nicotiana tabacum HOM05D004263 ORTHO05D004931 3.2e-182 642.9 394 81.7
SHI10474 Sapria himalayana HOM05D004263 ORTHO05D004931 3.1e-161 573.2 384 73.4
Nitab4.5_0001514g0020 Nicotiana tabacum HOM05D004263 ORTHO05D004931 1.1e-158 564.7 336 81.8
Nitab4.5_0000025g0490 Nicotiana tabacum HOM05D004263 ORTHO05D004931 1.6e-146 524.2 357 75.1
Nitab4.5_0000025g0510 Nicotiana tabacum HOM05D004263 ORTHO05D004931 2.0e-144 517.3 282 87.9
TPR.G26159 Trifolium pratense HOM05D004263 ORTHO05D004931 3.7e-138 496.5 302 83.1
CAN.G224.16 Capsicum annuum HOM05D004263 ORTHO05D004931 3.2e-118 430.3 249 85.1
PRCOL_00001544 Prasinoderma coloniale HOM05D004263 ORTHO05D004931 4.2e-110 403.3 824 34.1
CAN.G2148.2 Capsicum annuum HOM05D004263 ORTHO05D004931 5.5e-102 376.3 268 72.4
VMungo1080G0385 Vigna mungo HOM05D004263 ORTHO05D004931 8.0e-93 345.9 201 82.6
Cre07.g328550 Chlamydomonas reinhardtii HOM05D004263 ORTHO05D004931 1.0e-92 345.5 915 29.9
Cfa022578 Carpinus fangiana HOM05D004263 ORTHO05D004931 9.2e-89 332.4 780 29.6
TPR.G28496 Trifolium pratense HOM05D004086 ORTHO05D004641 4.6e-80 303.5 198 75.8
CBR_g50947 Chara braunii HOM05D004263 ORTHO05D004931 5.6e-78 296.6 284 55.6
CSS0037177 Camellia sinensis var. sinensis HOM05D004263 ORTHO05D004931 2.9e-74 284.3 210 69.5
Dinv23715 Davidia involucrata HOM05D004263 ORTHO05D004931 3.0e-71 274.2 145 92.4
Atru.chr5.268 Acer truncatum HOM05D004263 ORTHO05D004931 6.2e-53 213.4 135 72.6
Atru.chr3.3152 Acer truncatum HOM05D004263 ORTHO05D004931 2.5e-46 191.4 120 76.7
CBR_g40703 Chara braunii HOM05D004263 ORTHO05D004931 1.9e-41 175.3 226 46.5
CBR_g40701 Chara braunii HOM05D004263 ORTHO05D004931 3.2e-41 174.5 163 58.9
CSS0002414 Camellia sinensis var. sinensis HOM05D004263 ORTHO05D004931 2.7e-40 171.4 174 59.8
SEGI_15765 Sequoiadendron giganteum HOM05D004263 ORTHO05D004931 1.3e-39 169.1 103 79.6
SEGI_30776 Sequoiadendron giganteum HOM05D004263 ORTHO05D004931 1.3e-39 169.1 103 79.6
CAN.G224.15 Capsicum annuum HOM05D004263 ORTHO05D004931 1.7e-34 152.1 117 65.0
SEGI_40242 Sequoiadendron giganteum HOM05D004263 ORTHO05D004931 2.2e-34 151.8 94 77.7
CAN.G666.1 Capsicum annuum HOM05D004263 ORTHO05D004931 8.7e-31 139.8 97 69.1
SEGI_16142 Sequoiadendron giganteum HOM05D004263 ORTHO05D004931 9.6e-30 136.3 73 91.8
C09p48310 Brassica napus HOM05D005294 ORTHO05D006720 5.8e-27 127.1 118 62.7
BolC9t57681H Brassica oleracea HOM05D005294 ORTHO05D006720 7.6e-27 126.7 114 63.2
CAN.G2148.3 Capsicum annuum HOM05D004263 ORTHO05D004931 8.4e-26 123.2 75 80.0
CAN.G224.17 Capsicum annuum HOM05D004263 ORTHO05D004931 1.4e-25 122.5 75 78.7
SEGI_10945 Sequoiadendron giganteum HOM05D004263 ORTHO05D004931 1.2e-24 119.4 81 67.9
SEGI_22414 Sequoiadendron giganteum HOM05D004263 ORTHO05D004931 4.6e-24 117.5 127 51.2
SEGI_06467 Sequoiadendron giganteum HOM05D004263 ORTHO05D004931 7.9e-24 116.7 110 56.4
CSS0009942 Camellia sinensis var. sinensis HOM05D004263 ORTHO05D004931 1.3e-21 109.4 80 77.5
unitig_0.g1434 Utricularia gibba HOM05D004263 ORTHO05D004931 1.9e-17 95.5 87 52.9
MD02G1222100 Malus domestica HOM05D004263 ORTHO05D004931 2.7e-16 91.7 52 80.8
SEGI_34242 Sequoiadendron giganteum HOM05D004263 ORTHO05D004931 1.0e-15 89.7 113 40.7
Nitab4.5_0000025g0500 Nicotiana tabacum HOM05D004263 ORTHO05D004931 2.3e-15 88.6 45 91.1
MCO10G067 Micromonas commoda HOM05D004263 ORTHO05D004931 1.5e-14 85.9 228 24.1
Manes.13G151750 Manihot esculenta HOM05D004263 ORTHO05D004931 9.7e-14 83.2 160 36.2


User provided reference genes

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