Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc34.5 Carica papaya HOM05D004277 ORTHO05D005148 3.4e-178 628.2 322 100.0
COL.COLO4_05147 Corchorus olitorius HOM05D004277 ORTHO05D004634 3.1e-75 286.2 235 65.1
Haze_07825 Corylus avellana HOM05D004277 ORTHO05D005148 6.6e-73 278.5 231 64.9
QL12p004433 Quercus lobata HOM05D004277 ORTHO05D005148 4.7e-71 272.3 232 62.9
GSVIVG01036797001 Vitis vinifera HOM05D004277 ORTHO05D005148 5.2e-70 268.9 277 54.2
CANSAT80G1893 Cannabis sativa HOM05D004277 ORTHO05D005148 1.2e-69 267.7 232 61.6
Atru.chr1.126 Acer truncatum HOM05D004277 ORTHO05D005148 2.0e-69 266.9 229 64.2
Manes.03G176500 Manihot esculenta HOM05D004277 ORTHO05D005148 2.0e-69 266.9 231 60.6
CSS0042003 Camellia sinensis var. sinensis HOM05D004277 ORTHO05D005148 3.4e-69 266.2 232 62.1
Gorai.004G269300 Gossypium raimondii HOM05D004277 ORTHO05D005148 9.8e-69 264.6 231 63.2
Gohir.D08G252532 Gossypium hirsutum HOM05D004277 ORTHO05D005148 3.7e-68 262.7 232 62.5
Prupe.4G136200 Prunus persica HOM05D004277 ORTHO05D005148 3.7e-68 262.7 232 61.2
CiPaw.11G062700 Carya illinoinensis HOM05D004277 ORTHO05D005148 6.4e-68 261.9 232 61.6
Actinidia12771 Actinidia chinensis HOM05D004277 ORTHO05D005148 8.3e-68 261.5 230 62.6
Potri.007G067700 Populus trichocarpa HOM05D004277 ORTHO05D005148 1.1e-67 261.2 233 59.2
Gohir.A08G232300 Gossypium hirsutum HOM05D004277 ORTHO05D005148 1.8e-67 260.4 232 62.1
MD05G1224200 Malus domestica HOM05D004277 ORTHO05D005148 9.2e-67 258.1 232 59.9
FAN16G3091 Fragaria x ananassa HOM05D004277 ORTHO05D005148 2.0e-66 256.9 229 59.0
TWI38G1370 Tripterygium wilfordii HOM05D004277 ORTHO05D005148 2.0e-66 256.9 234 59.4
TAR626G0647 Trochodendron aralioides HOM05D004277 ORTHO05D005148 2.0e-66 256.9 255 55.3
FvH4_3g15310 Fragaria vesca HOM05D004277 ORTHO05D005148 3.5e-66 256.1 229 59.0
Ciclev10007189m.g Citrus clementina HOM05D004277 ORTHO05D005148 5.9e-66 255.4 230 60.9
RcHm_v2.0_Chr5g0025751 Rosa chinensis HOM05D004277 ORTHO05D005148 5.9e-66 255.4 229 58.5
FAN11G0660 Fragaria x ananassa HOM05D004277 ORTHO05D005148 1.0e-65 254.6 229 59.0
Sabra07G0053700 Salix brachista HOM05D004277 ORTHO05D005148 2.3e-65 253.4 233 59.7
vmacro11705 Vaccinium macrocarpon HOM05D004277 ORTHO05D005148 8.6e-65 251.5 232 59.9
FAN21G0666 Fragaria x ananassa HOM05D004277 ORTHO05D005148 3.3e-64 249.6 229 57.6
arahy.Tifrunner.gnm1.ann1.J7P8I0 Arachis hypogaea HOM05D004277 ORTHO05D005148 1.2e-63 247.7 226 58.4
Rhsim06G0241600 Rhododendron simsii HOM05D004277 ORTHO05D005148 2.8e-63 246.5 244 57.8
Lsat_1_v5_gn_7_70840 Lactuca sativa HOM05D004277 ORTHO05D005148 8.0e-63 245.0 230 59.6
Lalb_Chr18g0046601 Lupinus albus HOM05D004277 ORTHO05D005148 1.8e-62 243.8 230 57.0
Glyma.09G284900 Glycine max HOM05D004277 ORTHO05D005148 5.2e-62 242.3 230 57.8
Aqoxy7G03893 Aquilegia oxysepala HOM05D004277 ORTHO05D005148 2.0e-61 240.4 273 50.5
Eucgr.F04450 Eucalyptus grandis HOM05D004277 ORTHO05D005148 2.6e-61 240.0 230 55.2
Lj2g0013005 Lotus japonicus HOM05D004277 ORTHO05D005148 2.6e-61 240.0 230 57.4
Psat6g100160 Pisum sativum HOM05D004277 ORTHO05D005148 4.4e-61 239.2 232 58.2
TPR.G35532 Trifolium pratense HOM05D004277 ORTHO05D005148 5.8e-61 238.8 232 56.9
Medtr1g038850 Medicago truncatula HOM05D004277 ORTHO05D005148 7.5e-61 238.4 232 56.5
Sed0006880 Sechium edule HOM05D004277 ORTHO05D005148 7.5e-61 238.4 231 57.1
HanXRQChr03g0078241 Helianthus annuus HOM05D004277 ORTHO05D005148 1.7e-60 237.3 256 53.1
Aa31LG4G1820 Aethionema arabicum HOM05D004277 ORTHO05D005148 2.9e-60 236.5 229 55.0
Ca_12380_v3 Cicer arietinum L. HOM05D004277 ORTHO05D005148 4.9e-60 235.7 231 55.8
Ca_12388_v3 Cicer arietinum L. HOM05D004277 ORTHO05D005148 1.1e-59 234.6 231 55.8
ClCG09G022670 Citrullus lanatus HOM05D004277 ORTHO05D005148 1.4e-59 234.2 232 55.6
MELO3C012612.2 Cucumis melo HOM05D004277 ORTHO05D005148 5.4e-59 232.3 232 55.6
CARHR072830 Cardamine hirsuta HOM05D004277 ORTHO05D005148 7.0e-59 231.9 229 54.6
Dinv19596 Davidia involucrata HOM05D004277 ORTHO05D005148 2.0e-58 230.3 206 61.7
THA.LOC104812364 Tarenaya hassleriana HOM05D004277 ORTHO05D005148 3.5e-58 229.6 229 57.6
Migut.H01674 Erythranthe guttata HOM05D004277 ORTHO05D005148 1.3e-57 227.6 254 48.4
VMungo0251G3136 Vigna mungo HOM05D004277 ORTHO05D005148 1.3e-57 227.6 230 54.3
PSO210G0403 Papaver somniferum HOM05D004277 ORTHO05D005148 2.3e-57 226.9 235 54.9
PSO210G1337 Papaver somniferum HOM05D004277 ORTHO05D005148 6.6e-57 225.3 263 50.2
AL2G39660 Arabidopsis lyrata HOM05D004277 ORTHO05D005148 8.6e-57 224.9 229 53.7
BcaB05g25178 Brassica carinata HOM05D004277 ORTHO05D005148 1.1e-56 224.6 229 53.7
Nn3g21002 Nelumbo nucifera HOM05D004277 ORTHO05D005148 1.1e-56 224.6 255 50.2
BraA02t07267Z Brassica rapa HOM05D004277 ORTHO05D005148 5.6e-56 222.2 229 54.6
CsaV3_7G022870 Cucumis sativus L. HOM05D004277 ORTHO05D005148 9.5e-56 221.5 232 53.0
MBI02_g15959_MAGBIO Magnolia biondii HOM05D004277 ORTHO05D005148 1.2e-55 221.1 227 54.2
Oeu019710.1 Olea europaea HOM05D004277 ORTHO05D005148 1.6e-55 220.7 253 48.2
AT1G79190 Arabidopsis thaliana HOM05D004277 ORTHO05D005148 3.6e-55 219.5 229 52.0
Phvul.003G002100 Phaseolus vulgaris HOM05D004277 ORTHO05D005148 3.6e-55 219.5 230 53.0
Thhalv10018016m.g Eutrema salsugineum HOM05D004277 ORTHO05D005148 1.4e-54 217.6 213 54.5
ECA240G2290 Erigeron canadensis HOM05D004277 ORTHO05D005148 3.1e-54 216.5 230 54.3
SGA_v2.0_scaffold239G44031 Striga asiatica HOM05D004277 ORTHO05D005148 3.1e-54 216.5 235 52.8
Carub.0002s2605 Capsella rubella HOM05D004277 ORTHO05D005148 4.0e-54 216.1 229 52.8
Peaxi162Scf00006g01510 Petunia axillaris HOM05D004277 ORTHO05D005148 8.9e-54 214.9 231 54.1
Nitab4.5_0009962g0010 Nicotiana tabacum HOM05D004277 ORTHO05D005148 1.5e-53 214.2 231 53.7
Solyc12g017280.2 Solanum lycopersicum HOM05D004277 ORTHO05D005148 1.5e-53 214.2 231 53.2
A02p22660 Brassica napus HOM05D004277 ORTHO05D005148 2.0e-53 213.8 231 53.7
Sc06g0002790 Simmondsia chinensis HOM05D004277 ORTHO05D005148 2.0e-53 213.8 237 52.7
Sopen12g008100 Solanum pennellii HOM05D004277 ORTHO05D005148 2.0e-53 213.8 231 53.2
Peaxi162Scf00078g01336 Petunia axillaris HOM05D004277 ORTHO05D005148 5.8e-53 212.2 231 52.8
BcaC03g15873 Brassica carinata HOM05D004277 ORTHO05D005148 7.5e-53 211.8 230 53.0
BolC2t09641H Brassica oleracea HOM05D004277 ORTHO05D005148 7.5e-53 211.8 230 53.0
C02p36270 Brassica napus HOM05D004277 ORTHO05D005148 2.2e-52 210.3 230 52.6
Cc05_g16300 Coffea canephora HOM05D004277 ORTHO05D005148 8.3e-52 208.4 238 50.4
SalBow7G4120 Salvia bowleyana HOM05D004277 ORTHO05D005148 2.4e-51 206.8 231 51.1
ATR0763G037 Amborella trichopoda HOM05D004277 ORTHO05D005148 9.2e-51 204.9 229 49.3
AUR62006227 Chenopodium quinoa HOM05D004277 ORTHO05D005148 2.3e-49 200.3 238 48.7
PGR031G1415 Punica granatum HOM05D004277 ORTHO05D005148 8.6e-49 198.4 202 52.5
CDE05G2591 Ceratophyllum demersum HOM05D004277 ORTHO05D005148 3.1e-46 189.9 229 47.2
Zm00001eb224850 Zea mays HOM05D004277 ORTHO05D005148 1.2e-45 188.0 229 46.3
Lj2A15G78 Lonicera japonica HOM05D004277 ORTHO05D005148 2.6e-45 186.8 196 54.1
DCAR_019921 Daucus carota HOM05D004277 ORTHO05D005148 4.4e-45 186.0 203 52.2
unitig_8.g4753 Utricularia gibba HOM05D004277 ORTHO05D005148 1.6e-42 177.6 212 49.5
Ah.02g131470 Amaranthus hybridus HOM05D004277 ORTHO05D005148 5.1e-41 172.6 199 46.2
arahy.Tifrunner.gnm1.ann1.3DGA3E Arachis hypogaea HOM05D004277 ORTHO05D005148 6.6e-41 172.2 190 52.6
Nitab4.5_0000388g0130 Nicotiana tabacum HOM05D004277 ORTHO05D005148 2.5e-40 170.2 218 47.2
EL10Ac2g03265 Beta vulgaris HOM05D004277 ORTHO05D005148 4.7e-39 166.0 198 49.0
SEGI_33780 Sequoiadendron giganteum HOM05D004277 ORTHO05D005148 3.2e-35 153.3 251 39.4
AUR62036983 Chenopodium quinoa HOM05D004277 ORTHO05D005148 5.4e-35 152.5 200 45.0
SEGI_06167 Sequoiadendron giganteum HOM05D004277 ORTHO05D005148 1.2e-34 151.4 246 39.4
SEGI_16544 Sequoiadendron giganteum HOM05D004277 ORTHO05D005148 1.2e-34 151.4 249 39.0
Cc03_g14950 Coffea canephora HOM05D004277 ORTHO05D005148 6.6e-33 145.6 232 40.9
TPR.G34228 Trifolium pratense HOM05D004277 ORTHO05D005148 1.5e-32 144.4 267 38.6
Thecc.07G167800 Theobroma cacao HOM05D004277 ORTHO05D005148 2.1e-31 140.6 148 53.4
SHI21614 Sapria himalayana HOM05D004277 ORTHO05D005148 1.3e-28 131.3 166 46.4
Mapoly0151s0022 Marchantia polymorpha HOM05D004277 ORTHO05D005148 5.1e-25 119.4 247 33.6
AagrBONN_evm.TU.Sc2ySwM_228.3209 Anthoceros agrestis HOM05D004277 ORTHO05D005148 1.4e-22 111.3 251 30.3
Pp3c22_19900 Physcomitrium patens HOM05D004277 ORTHO05D005148 3.8e-20 103.2 256 30.9
Thecc.08G194100 Theobroma cacao HOM05D004277 ORTHO05D005148 1.4e-19 101.3 74 71.6
Sp5g34240 Schrenkiella parvula HOM05D004277 ORTHO05D005148 3.5e-18 96.7 122 41.0
Actinidia07375 Actinidia chinensis HOM05D004277 ORTHO05D005148 7.4e-16 89.0 140 41.4
PSO478G2881 Papaver somniferum HOM05D004277 ORTHO05D005148 2.9e-12 77.0 58 70.7
CBR_g39748 Chara braunii HOM05D004277 ORTHO05D005148 1.4e-11 74.7 267 26.2
TPR.G236 Trifolium pratense HOM05D004277 ORTHO05D005148 1.9e-11 74.3 51 64.7
HPP92_021082 Vanilla planifolia HOM05D004277 ORTHO05D005148 7.1e-11 72.4 232 31.5
MCO13G561 Micromonas commoda HOM05D004277 ORTHO05D005148 8.2e-07 58.9 240 23.3
Zm00001eb372650 Zea mays HOM05D004277 ORTHO05D005148 3.1e-06 57.0 49 46.9
PRCOL_00003205 Prasinoderma coloniale HOM05D004277 ORTHO05D005148 4.1e-06 56.6 216 25.5


User provided reference genes

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