Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc34.47 Carica papaya HOM05D007156 ORTHO05D003871 6.2e-52 207.2 108 100.0
CSS0000680 Camellia sinensis var. sinensis HOM05D007156 ORTHO05D003871 2.6e-21 105.5 116 57.8
Sed0007405 Sechium edule HOM05D007156 ORTHO05D003871 4.4e-21 104.8 103 61.2
COL.COLO4_13040 Corchorus olitorius HOM05D007156 ORTHO05D003871 1.3e-20 103.2 112 55.4
Thecc.02G165500 Theobroma cacao HOM05D007156 ORTHO05D003871 1.3e-20 103.2 109 57.8
Ciclev10017232m.g Citrus clementina HOM05D007156 ORTHO05D003871 3.7e-20 101.7 110 60.0
TAR271G0004 Trochodendron aralioides HOM05D007156 ORTHO05D003871 4.8e-20 101.3 105 56.2
Haze_12992 Corylus avellana HOM05D007156 ORTHO05D003871 8.2e-20 100.5 115 56.5
Hma1.2p1_0712F.1_g207550 Hydrangea macrophylla HOM05D007156 ORTHO05D003871 1.4e-19 99.8 117 53.8
Cfa014479 Carpinus fangiana HOM05D007156 ORTHO05D003871 1.8e-19 99.4 115 55.7
QL08p034497 Quercus lobata HOM05D007156 ORTHO05D003871 2.4e-19 99.0 114 58.8
Psat7g163320 Pisum sativum HOM05D007156 ORTHO05D003871 6.9e-19 97.4 82 64.6
Sabra19G0123400 Salix brachista HOM05D007156 ORTHO05D003871 1.5e-18 96.3 106 55.7
Manes.12G077701 Manihot esculenta HOM05D007156 ORTHO05D003871 2.0e-18 95.9 113 52.2
Glyma.06G301200 Glycine max HOM05D007156 ORTHO05D003871 2.6e-18 95.5 68 67.6
Dinv18559 Davidia involucrata HOM05D007156 ORTHO05D003871 3.4e-18 95.1 108 52.8
Sabra13G0122400 Salix brachista HOM05D007156 ORTHO05D003871 7.7e-18 94.0 102 55.9
Potri.019G125100 Populus trichocarpa HOM05D007156 ORTHO05D003871 1.0e-17 93.6 105 58.1
CiPaw.04G120100 Carya illinoinensis HOM05D007156 ORTHO05D003871 1.3e-17 93.2 118 51.7
Potri.013G152300 Populus trichocarpa HOM05D007156 ORTHO05D003871 1.7e-17 92.8 104 56.7
Phvul.011G107900 Phaseolus vulgaris HOM05D007156 ORTHO05D003871 3.8e-17 91.7 59 76.3
VMungo1127G0041 Vigna mungo HOM05D007156 ORTHO05D003871 5.0e-17 91.3 75 62.7
Medtr0945s0020 Medicago truncatula HOM05D007156 ORTHO05D003871 6.5e-17 90.9 66 69.7
Glyma.12G103200 Glycine max HOM05D007156 ORTHO05D003871 8.5e-17 90.5 52 82.7
RcHm_v2.0_Chr2g0160641 Rosa chinensis HOM05D007156 ORTHO05D003871 2.5e-16 89.0 122 50.8
Atru.chr6.3108 Acer truncatum HOM05D007156 ORTHO05D003871 3.2e-16 88.6 110 52.7
TPR.G19047 Trifolium pratense HOM05D007156 ORTHO05D003871 3.2e-16 88.6 52 82.7
CsaV3_7G003930 Cucumis sativus L. HOM05D007156 ORTHO05D003871 1.6e-15 86.3 98 56.1
Sabra19G0131200 Salix brachista HOM05D007156 ORTHO05D003871 2.1e-15 85.9 113 52.2
Glyma.13G304200 Glycine max HOM05D007156 ORTHO05D003871 2.7e-15 85.5 59 69.5
Lj3g0000666 Lotus japonicus HOM05D007156 ORTHO05D003871 2.7e-15 85.5 123 46.3
ClCG02G001520 Citrullus lanatus HOM05D007156 ORTHO05D003871 3.6e-15 85.1 103 54.4
FAN05G2387 Fragaria x ananassa HOM05D007156 ORTHO05D003871 3.6e-15 85.1 114 50.9
MBI18_g20355_MAGBIO Magnolia biondii HOM05D007156 ORTHO05D003871 4.7e-15 84.7 107 50.5
FAN02G1242 Fragaria x ananassa HOM05D007156 ORTHO05D003871 8.0e-15 84.0 114 50.0
FAN09G0550 Fragaria x ananassa HOM05D007156 ORTHO05D003871 8.0e-15 84.0 114 50.0
Phvul.005G111100 Phaseolus vulgaris HOM05D007156 ORTHO05D003871 8.0e-15 84.0 70 62.9
Prupe.3G223500 Prunus persica HOM05D007156 ORTHO05D003871 1.8e-14 82.8 116 49.1
MBI02_g42366_MAGBIO Magnolia biondii HOM05D007156 ORTHO05D003871 2.3e-14 82.4 107 50.5
MBI02_g43088_MAGBIO Magnolia biondii HOM05D007156 ORTHO05D003871 2.3e-14 82.4 107 50.5
FvH4_6g43890 Fragaria vesca HOM05D007156 ORTHO05D003871 3.0e-14 82.0 114 50.0
FAN14G5947 Fragaria x ananassa HOM05D007156 ORTHO05D003871 3.0e-14 82.0 114 50.0
CiPaw.03G165400 Carya illinoinensis HOM05D007156 ORTHO05D003871 3.9e-14 81.6 121 45.5
Nitab4.5_0009996g0020 Nicotiana tabacum HOM05D007156 ORTHO05D003871 5.2e-14 81.3 111 51.4
MD09G1127500 Malus domestica HOM05D007156 ORTHO05D003871 6.7e-14 80.9 109 46.8
Gohir.D02G185700 Gossypium hirsutum HOM05D007156 ORTHO05D003871 8.8e-14 80.5 113 46.9
Gorai.005G208200 Gossypium raimondii HOM05D007156 ORTHO05D003871 8.8e-14 80.5 113 46.9
Lalb_Chr24g0393601 Lupinus albus HOM05D007156 ORTHO05D003871 8.8e-14 80.5 109 45.9
Psat5g266920 Pisum sativum HOM05D007156 ORTHO05D003871 8.8e-14 80.5 52 71.2
VMungo1080G0311 Vigna mungo HOM05D007156 ORTHO05D003871 8.8e-14 80.5 64 67.2
Actinidia12482 Actinidia chinensis HOM05D007156 ORTHO05D003871 1.1e-13 80.1 65 67.7
MD09G1102100 Malus domestica HOM05D007156 ORTHO05D003871 1.1e-13 80.1 108 50.9
Gohir.A03G162600 Gossypium hirsutum HOM05D007156 ORTHO05D003871 2.0e-13 79.3 113 46.0
arahy.Tifrunner.gnm1.ann1.ABE34K Arachis hypogaea HOM05D007156 ORTHO05D003871 3.3e-13 78.6 58 74.1
MBI02_g42365_MAGBIO Magnolia biondii HOM05D007156 ORTHO05D003871 9.7e-13 77.0 108 49.1
MBI02_g43089_MAGBIO Magnolia biondii HOM05D007156 ORTHO05D003871 9.7e-13 77.0 108 49.1
Migut.M00380 Erythranthe guttata HOM05D007156 ORTHO05D003871 1.7e-12 76.3 93 49.5
CAN.G86.35 Capsicum annuum HOM05D007156 ORTHO05D003871 3.7e-12 75.1 118 45.8
Lj3g0015957 Lotus japonicus HOM05D007156 ORTHO05D003871 6.3e-12 74.3 112 49.1
Nn1g03759 Nelumbo nucifera HOM05D007156 ORTHO05D003871 6.3e-12 74.3 117 39.3
Sed0001937 Sechium edule HOM05D007156 ORTHO05D003871 1.1e-11 73.6 106 50.0
unitig_746.g26730 Utricularia gibba HOM05D007156 ORTHO05D003871 1.1e-11 73.6 94 48.9
Ca_01559_v3 Cicer arietinum L. HOM05D007156 ORTHO05D003871 1.4e-11 73.2 50 74.0
Nitab4.5_0001302g0030 Nicotiana tabacum HOM05D007156 ORTHO05D003871 1.4e-11 73.2 127 44.9
TPR.G18057 Trifolium pratense HOM05D007156 ORTHO05D003871 1.8e-11 72.8 59 61.0
Nn2g11286 Nelumbo nucifera HOM05D007156 ORTHO05D003871 2.4e-11 72.4 55 58.2
CSS0043735 Camellia sinensis var. sinensis HOM05D007156 ORTHO05D003871 5.3e-11 71.2 110 46.4
Solyc12g005690.1 Solanum lycopersicum HOM05D007156 ORTHO05D003871 5.3e-11 71.2 92 44.6
unitig_899.g15247 Utricularia gibba HOM05D007156 ORTHO05D003871 5.3e-11 71.2 82 50.0
Gohir.A04G106700 Gossypium hirsutum HOM05D007156 ORTHO05D003871 7.0e-11 70.9 106 44.3
ATR0804G053 Amborella trichopoda HOM05D007156 ORTHO05D003871 9.1e-11 70.5 102 42.2
Eucgr.A01740 Eucalyptus grandis HOM05D007156 ORTHO05D003871 9.1e-11 70.5 38 92.1
Gorai.012G132600 Gossypium raimondii HOM05D007156 ORTHO05D003871 1.2e-10 70.1 108 44.4
MBI18_g38397_MAGBIO Magnolia biondii HOM05D007156 ORTHO05D003871 2.0e-10 69.3 99 46.5
MSTRG.6540 Avicennia marina HOM05D007156 ORTHO05D003871 2.6e-10 68.9 58 63.8
Dinv17859 Davidia involucrata HOM05D001601 ORTHO05D006936 2.6e-10 68.9 95 46.3
Sopen07g026540 Solanum pennellii HOM05D007156 ORTHO05D003871 2.6e-10 68.9 70 60.0
PGSC0003DMG400013754 Solanum tuberosum HOM05D007156 ORTHO05D003871 2.6e-10 68.9 92 45.7
Solyc07g052990.1 Solanum lycopersicum HOM05D007156 ORTHO05D003871 4.5e-10 68.2 70 58.6
Sed0003235 Sechium edule HOM05D007156 ORTHO05D003871 5.9e-10 67.8 101 47.5
Rhsim06G0154900 Rhododendron simsii HOM05D007156 ORTHO05D003871 1.0e-09 67.0 49 71.4
Peaxi162Scf00012g00273 Petunia axillaris HOM05D007156 ORTHO05D003871 1.3e-09 66.6 105 46.7
ClCG02G011170 Citrullus lanatus HOM05D007156 ORTHO05D003871 1.7e-09 66.2 101 43.6
Nn1g06910 Nelumbo nucifera HOM05D007156 ORTHO05D003871 2.2e-09 65.9 119 37.8
PGSC0003DMG400026188 Solanum tuberosum HOM05D007156 ORTHO05D003871 5.0e-09 64.7 113 45.1
Dinv18957 Davidia involucrata HOM05D007156 ORTHO05D003871 6.5e-09 64.3 92 41.3
Ca_26200_v3 Cicer arietinum L. HOM05D007156 ORTHO05D003871 1.1e-08 63.5 88 46.6
TAR633G1059 Trochodendron aralioides HOM05D007866 ORTHO05D003871 1.5e-08 63.2 144 35.4
SGA_v2.0_scaffold70G23435 Striga asiatica HOM05D007156 ORTHO05D003871 3.2e-08 62.0 70 52.9
RcHm_v2.0_Chr3g0464671 Rosa chinensis HOM05D007866 ORTHO05D003871 4.2e-08 61.6 119 39.5
Duzib160G0418 Durio zibethinus HOM05D001601 ORTHO05D006936 5.5e-08 61.2 62 48.4
BcaB04g18538 Brassica carinata HOM05D007866 ORTHO05D003871 9.4e-08 60.5 72 50.0
BcaB04g18539 Brassica carinata HOM05D007866 ORTHO05D003871 9.4e-08 60.5 72 50.0
Nitab4.5_0000362g0160 Nicotiana tabacum HOM05D007866 ORTHO05D003871 1.6e-07 59.7 83 38.6
CSS0048777 Camellia sinensis var. sinensis HOM05D007156 ORTHO05D003871 2.1e-07 59.3 105 38.1
CsaV3_6G012600 Cucumis sativus L. HOM05D007156 ORTHO05D003871 2.7e-07 58.9 101 42.6
Oeu030552.1 Olea europaea HOM05D007866 ORTHO05D003871 2.7e-07 58.9 54 53.7
Peaxi162Scf00007g00157 Petunia axillaris HOM05D007156 ORTHO05D003871 2.7e-07 58.9 68 52.9
PGSC0003DMG400021719 Solanum tuberosum HOM05D001601 ORTHO05D006936 2.7e-07 58.9 70 44.3
Ciclev10013493m.g Citrus clementina HOM05D007866 ORTHO05D003871 3.6e-07 58.5 140 32.9
Rhsim13G0163300 Rhododendron simsii HOM05D007156 ORTHO05D003871 3.6e-07 58.5 107 35.5
Solyc02g079800.1 Solanum lycopersicum HOM05D007156 ORTHO05D003871 3.6e-07 58.5 100 37.0
Nitab4.5_0008116g0010 Nicotiana tabacum HOM05D007866 ORTHO05D003871 4.7e-07 58.2 52 51.9
Atru.chr8.2088 Acer truncatum HOM05D007866 ORTHO05D003871 6.1e-07 57.8 77 42.9
Lj3g0011949 Lotus japonicus HOM05D007866 ORTHO05D003871 8.0e-07 57.4 39 61.5
Potri.004G029700 Populus trichocarpa HOM05D012748 ORTHO05D014783 8.0e-07 57.4 105 39.0
Medtr2g089190 Medicago truncatula HOM05D007156 ORTHO05D003871 1.0e-06 57.0 53 52.8
THA.LOC104816660 Tarenaya hassleriana HOM05D007866 ORTHO05D003871 1.0e-06 57.0 46 58.7
AL70U10030 Arabidopsis lyrata HOM05D007866 ORTHO05D003871 1.8e-06 56.2 101 37.6
AT3G09280 Arabidopsis thaliana HOM05D007866 ORTHO05D003871 1.8e-06 56.2 98 37.8
CiPaw.09G201000 Carya illinoinensis HOM05D007866 ORTHO05D003871 1.8e-06 56.2 47 53.2
Sopen02g024570 Solanum pennellii HOM05D007156 ORTHO05D003871 1.8e-06 56.2 102 37.3
CSS0008619 Camellia sinensis var. sinensis HOM05D007156 ORTHO05D003871 2.3e-06 55.8 40 67.5
BraA03t12778Z Brassica rapa HOM05D007866 ORTHO05D003871 3.0e-06 55.5 66 50.0
CSS0047873 Camellia sinensis var. sinensis HOM05D007866 ORTHO05D003871 3.0e-06 55.5 53 49.1
Sp3g07650 Schrenkiella parvula HOM05D007866 ORTHO05D003871 3.0e-06 55.5 50 52.0
PGSC0003DMG400037339 Solanum tuberosum HOM05D007866 ORTHO05D003871 3.0e-06 55.5 59 45.8
Aqoxy4G02532 Aquilegia oxysepala HOM05D007156 ORTHO05D003871 4.0e-06 55.1 56 53.6
Sabra04G0016700 Salix brachista HOM05D007156 ORTHO05D003871 4.0e-06 55.1 51 52.9
Sopen09g006160 Solanum pennellii HOM05D007866 ORTHO05D003871 4.0e-06 55.1 59 44.1
Thecc.06G206300 Theobroma cacao HOM05D001601 ORTHO05D006936 4.0e-06 55.1 106 39.6
Gohir.A01G221050 Gossypium hirsutum HOM05D007866 ORTHO05D003871 5.2e-06 54.7 36 63.9
Gohir.D01G209950 Gossypium hirsutum HOM05D007866 ORTHO05D003871 5.2e-06 54.7 36 63.9
Gorai.002G255600 Gossypium raimondii HOM05D007866 ORTHO05D003871 5.2e-06 54.7 36 63.9
Lalb_Chr07g0193271 Lupinus albus HOM05D007866 ORTHO05D003871 5.2e-06 54.7 36 66.7
TAR633G1409 Trochodendron aralioides HOM05D007866 ORTHO05D003871 5.2e-06 54.7 47 55.3
AL3G20400 Arabidopsis lyrata HOM05D007866 ORTHO05D003871 6.7e-06 54.3 100 39.0
CSS0026310 Camellia sinensis var. sinensis HOM05D007866 ORTHO05D003871 6.7e-06 54.3 52 51.9
MBI02_g35323_MAGBIO Magnolia biondii HOM05D007866 ORTHO05D003871 6.7e-06 54.3 61 47.5
MD12G1154500 Malus domestica HOM05D007866 ORTHO05D003871 6.7e-06 54.3 76 43.4
Os07g0549100 Oryza sativa ssp. japonica HOM05D052182 ORTHO05D003871 6.7e-06 54.3 54 48.1
C03p43730 Brassica napus HOM05D007866 ORTHO05D003871 8.8e-06 53.9 97 38.1
FvH4_6g12750 Fragaria vesca HOM05D007866 ORTHO05D003871 8.8e-06 53.9 118 34.7
FAN14G2102 Fragaria x ananassa HOM05D007866 ORTHO05D003871 8.8e-06 53.9 118 34.7


User provided reference genes

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