Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc34.203 Carica papaya HOM05D005230 ORTHO05D006506 9.6e-235 816.6 461 100.0
Manes.05G199900 Manihot esculenta HOM05D005230 ORTHO05D006506 2.8e-194 682.2 462 84.8
Prupe.4G269500 Prunus persica HOM05D005230 ORTHO05D006506 2.0e-192 676.0 462 84.0
Manes.01G177100 Manihot esculenta HOM05D005230 ORTHO05D006506 1.6e-189 666.4 463 83.2
Eucgr.B03758 Eucalyptus grandis HOM05D005230 ORTHO05D006506 7.9e-189 664.1 462 83.8
TWI75G0256 Tripterygium wilfordii HOM05D005230 ORTHO05D006506 1.4e-188 663.3 462 81.4
Potri.001G271800 Populus trichocarpa HOM05D005230 ORTHO05D006506 8.8e-188 660.6 459 81.5
MD03G1163000 Malus domestica HOM05D005230 ORTHO05D006506 4.4e-187 658.3 461 82.0
CiPaw.13G147000 Carya illinoinensis HOM05D005230 ORTHO05D006506 5.7e-187 657.9 462 83.5
Potri.009G066400 Populus trichocarpa HOM05D005230 ORTHO05D006506 7.4e-187 657.5 458 80.1
Atru.chr3.2845 Acer truncatum HOM05D005230 ORTHO05D006506 3.7e-186 655.2 464 76.1
CSS0035138 Camellia sinensis var. sinensis HOM05D005230 ORTHO05D006506 4.8e-186 654.8 461 82.0
CSS0009799 Camellia sinensis var. sinensis HOM05D005230 ORTHO05D006506 6.3e-186 654.4 461 81.8
Sabra16G0167000 Salix brachista HOM05D005230 ORTHO05D006506 1.4e-185 653.3 459 80.6
QL01p016185 Quercus lobata HOM05D005230 ORTHO05D006506 4.1e-185 651.7 461 83.3
CANSAT54G1170 Cannabis sativa HOM05D005230 ORTHO05D006506 7.0e-185 651.0 462 82.3
Dinv29329 Davidia involucrata HOM05D005230 ORTHO05D006506 7.0e-185 651.0 461 83.1
TWI31G0483 Tripterygium wilfordii HOM05D005230 ORTHO05D006506 2.0e-184 649.4 462 81.6
COL.COLO4_33253 Corchorus olitorius HOM05D005230 ORTHO05D006506 1.3e-183 646.7 462 80.5
Ciclev10015197m.g Citrus clementina HOM05D005230 ORTHO05D006506 5.0e-183 644.8 465 82.4
Sabra09G0049500 Salix brachista HOM05D005230 ORTHO05D006506 5.0e-183 644.8 458 79.5
Thecc.09G252100 Theobroma cacao HOM05D005230 ORTHO05D006506 1.1e-182 643.7 462 80.5
Lj4g0004497 Lotus japonicus HOM05D005230 ORTHO05D006506 1.5e-182 643.3 461 80.5
Nn7g36961 Nelumbo nucifera HOM05D005230 ORTHO05D006506 1.5e-182 643.3 464 80.2
Lalb_Chr07g0186541 Lupinus albus HOM05D005230 ORTHO05D006506 7.2e-182 641.0 459 81.5
GSVIVG01020254001 Vitis vinifera HOM05D005230 ORTHO05D006506 9.4e-182 640.6 462 81.2
Phvul.002G235800 Phaseolus vulgaris HOM05D005230 ORTHO05D006506 6.1e-181 637.9 459 81.3
Duzib168G0825 Durio zibethinus HOM05D005230 ORTHO05D006506 8.0e-181 637.5 462 79.9
Glyma.08G113500 Glycine max HOM05D005230 ORTHO05D006506 1.8e-180 636.3 459 81.0
TPR.G24369 Trifolium pratense HOM05D005230 ORTHO05D006506 2.3e-180 636.0 458 79.5
Actinidia16258 Actinidia chinensis HOM05D005230 ORTHO05D006506 4.0e-180 635.2 459 80.4
Haze_23295 Corylus avellana HOM05D005230 ORTHO05D006506 4.0e-180 635.2 462 81.2
Oeu025950.1 Olea europaea HOM05D005230 ORTHO05D006506 1.1e-179 633.6 459 78.4
Glyma.05G155700 Glycine max HOM05D005230 ORTHO05D006506 2.0e-179 632.9 459 80.8
Rhsim13G0231000 Rhododendron simsii HOM05D005230 ORTHO05D006506 4.4e-179 631.7 459 80.0
Aa31LG1G8850 Aethionema arabicum HOM05D005230 ORTHO05D006506 9.7e-179 630.6 458 77.5
arahy.Tifrunner.gnm1.ann1.554KFZ Arachis hypogaea HOM05D005230 ORTHO05D006506 9.7e-179 630.6 459 73.4
arahy.Tifrunner.gnm1.ann1.YWPQ0A Arachis hypogaea HOM05D005230 ORTHO05D006506 9.7e-179 630.6 459 73.4
Psat7g073480 Pisum sativum HOM05D005230 ORTHO05D006506 9.7e-179 630.6 459 79.5
VMungo0251G0349 Vigna mungo HOM05D005230 ORTHO05D006506 9.7e-179 630.6 460 80.7
Ca_17953_v3 Cicer arietinum L. HOM05D005230 ORTHO05D006506 1.3e-178 630.2 459 80.6
THA.LOC104811208 Tarenaya hassleriana HOM05D005230 ORTHO05D006506 1.3e-178 630.2 458 79.5
Actinidia06848 Actinidia chinensis HOM05D005230 ORTHO05D006506 1.4e-177 626.7 459 80.0
Medtr8g085640 Medicago truncatula HOM05D005230 ORTHO05D006506 9.1e-177 624.0 454 79.7
CAN.G280.6 Capsicum annuum HOM05D005230 ORTHO05D006506 4.5e-176 621.7 461 79.2
Duzib150G1312 Durio zibethinus HOM05D005230 ORTHO05D006506 5.9e-176 621.3 462 78.8
FvH4_1g25390 Fragaria vesca HOM05D005230 ORTHO05D006506 5.9e-176 621.3 462 76.8
FAN23G0348 Fragaria x ananassa HOM05D005230 ORTHO05D006506 8.5e-175 617.5 462 76.4
Cfa009930 Carpinus fangiana HOM05D005230 ORTHO05D006506 2.5e-174 615.9 441 83.0
ClCG03G014290 Citrullus lanatus HOM05D005230 ORTHO05D006506 2.5e-174 615.9 462 77.9
FAN28G1729 Fragaria x ananassa HOM05D005230 ORTHO05D006506 2.5e-174 615.9 462 76.0
Cc01_g07300 Coffea canephora HOM05D005230 ORTHO05D006506 3.2e-174 615.5 462 78.6
Aqoxy1G00076 Aquilegia oxysepala HOM05D005230 ORTHO05D006506 5.5e-174 614.8 463 77.5
Lsat_1_v5_gn_2_32160 Lactuca sativa HOM05D005230 ORTHO05D006506 9.4e-174 614.0 459 77.8
PGSC0003DMG400027416 Solanum tuberosum HOM05D005230 ORTHO05D006506 1.2e-173 613.6 461 78.1
Sopen11g029740 Solanum pennellii HOM05D005230 ORTHO05D006506 1.6e-173 613.2 461 78.1
Solyc11g072090.2 Solanum lycopersicum HOM05D005230 ORTHO05D006506 6.1e-173 611.3 461 77.9
ECA238G4724 Erigeron canadensis HOM05D005230 ORTHO05D006506 8.0e-173 610.9 459 76.3
RcHm_v2.0_Chr2g0123421 Rosa chinensis HOM05D005230 ORTHO05D006506 8.0e-173 610.9 462 76.8
FAN19G0408 Fragaria x ananassa HOM05D005230 ORTHO05D006506 1.0e-172 610.5 461 75.7
MSTRG.21320 Avicennia marina HOM05D005230 ORTHO05D006506 4.4e-171 605.1 461 76.1
CsaV3_1G041930 Cucumis sativus L. HOM05D005230 ORTHO05D006506 5.7e-171 604.7 462 77.3
Sed0024170 Sechium edule HOM05D005230 ORTHO05D006506 9.8e-171 604.0 462 77.5
DCAR_031608 Daucus carota HOM05D005230 ORTHO05D006506 1.7e-170 603.2 461 75.1
MELO3C015608.2 Cucumis melo HOM05D005230 ORTHO05D006506 8.3e-170 600.9 462 76.8
Haze_23300 Corylus avellana HOM05D005230 ORTHO05D006506 1.1e-169 600.5 504 67.1
Oeu032061.2 Olea europaea HOM05D005230 ORTHO05D006506 4.1e-169 598.6 492 72.8
A10p20220 Brassica napus HOM05D005230 ORTHO05D006506 7.0e-169 597.8 460 75.9
Hund07409 Selenicereus undatus HOM05D005230 ORTHO05D006506 7.0e-169 597.8 466 75.1
HanXRQChr13g0402151 Helianthus annuus HOM05D005230 ORTHO05D006506 3.5e-168 595.5 458 75.5
Peaxi162Scf00978g00317 Petunia axillaris HOM05D005230 ORTHO05D006506 4.5e-168 595.1 461 75.3
SGA_v2.0_scaffold29G12151 Striga asiatica HOM05D005230 ORTHO05D006506 4.5e-168 595.1 461 73.3
SalBow6G0054 Salvia bowleyana HOM05D005230 ORTHO05D006506 1.3e-167 593.6 482 71.8
PSO339G0973 Papaver somniferum HOM05D005230 ORTHO05D006506 2.2e-167 592.8 459 75.8
BraA10t44093Z Brassica rapa HOM05D005230 ORTHO05D006506 5.0e-167 591.7 465 75.1
A02p05570 Brassica napus HOM05D005230 ORTHO05D006506 6.5e-167 591.3 455 76.7
PSO384G0943 Papaver somniferum HOM05D005230 ORTHO05D006506 6.5e-167 591.3 459 75.8
Gorai.006G123300 Gossypium raimondii HOM05D005230 ORTHO05D006506 3.2e-166 589.0 462 76.0
Gorai.004G013700 Gossypium raimondii HOM05D005230 ORTHO05D006506 5.5e-166 588.2 462 75.5
BNapus_Darmor_BZH_scaffold_38p02380 Brassica napus HOM05D005230 ORTHO05D006506 1.6e-165 586.6 455 76.3
BolC2t06957H Brassica oleracea HOM05D005230 ORTHO05D006506 1.6e-165 586.6 455 76.3
BraA02t05508Z Brassica rapa HOM05D005230 ORTHO05D006506 4.7e-165 585.1 455 75.6
Gohir.D08G019200 Gossypium hirsutum HOM05D005230 ORTHO05D006506 6.1e-165 584.7 462 75.1
Gohir.D09G105900 Gossypium hirsutum HOM05D005230 ORTHO05D006506 1.8e-164 583.2 462 75.8
Gohir.A08G009200 Gossypium hirsutum HOM05D005230 ORTHO05D006506 3.0e-164 582.4 462 75.5
AUR62006575 Chenopodium quinoa HOM05D005230 ORTHO05D006506 7.5e-163 577.8 464 75.2
Migut.D00707 Erythranthe guttata HOM05D005230 ORTHO05D006506 7.5e-163 577.8 475 72.4
AUR62000229 Chenopodium quinoa HOM05D005230 ORTHO05D006506 1.3e-162 577.0 464 74.8
Thhalv10013503m.g Eutrema salsugineum HOM05D005230 ORTHO05D006506 1.1e-161 573.9 388 76.8
Gohir.A09G109300 Gossypium hirsutum HOM05D005230 ORTHO05D006506 1.4e-161 573.5 462 74.0
CARHR193430 Cardamine hirsuta HOM05D005230 ORTHO05D006506 2.4e-161 572.8 386 75.6
FAN26G2809 Fragaria x ananassa HOM05D005230 ORTHO05D006506 2.4e-161 572.8 551 65.2
Nitab4.5_0002161g0080 Nicotiana tabacum HOM05D005230 ORTHO05D006506 2.0e-160 569.7 461 74.6
Sp6g24920 Schrenkiella parvula HOM05D005230 ORTHO05D006506 1.7e-159 566.6 386 75.4
Lj2C810G6 Lonicera japonica HOM05D005230 ORTHO05D006506 6.6e-159 564.7 463 72.8
ATR0307G025 Amborella trichopoda HOM05D005230 ORTHO05D006506 1.9e-158 563.1 462 72.5
MBI13_g00890_MAGBIO Magnolia biondii HOM05D005230 ORTHO05D006506 3.0e-156 555.8 462 66.5
AL6G30990 Arabidopsis lyrata HOM05D005230 ORTHO05D006506 8.9e-156 554.3 388 74.7
Carub.0006s1783 Capsella rubella HOM05D005230 ORTHO05D006506 9.2e-153 544.3 460 71.3
AT5G19485 Arabidopsis thaliana HOM05D005230 ORTHO05D006506 2.7e-152 542.7 388 73.7
CDE08G0498 Ceratophyllum demersum HOM05D005230 ORTHO05D006506 3.3e-150 535.8 465 63.2
EL10Ac4g10073 Beta vulgaris HOM05D005230 ORTHO05D006506 4.0e-148 528.9 465 63.2
HPP92_016891 Vanilla planifolia HOM05D005230 ORTHO05D006506 1.3e-143 513.8 458 68.3
Ah.06g194900 Amaranthus hybridus HOM05D005230 ORTHO05D006506 3.9e-143 512.3 462 67.5
Os06g0338900 Oryza sativa ssp. japonica HOM05D005230 ORTHO05D006506 9.5e-142 507.7 459 66.0
GSVIVG01002283001 Vitis vinifera HOM05D005230 ORTHO05D006506 1.6e-141 506.9 382 79.3
vmacro04223 Vaccinium macrocarpon HOM05D005230 ORTHO05D006506 3.5e-136 489.2 495 63.4
Sc16g0010870 Simmondsia chinensis HOM05D005230 ORTHO05D006506 7.8e-136 488.0 384 75.8
SEGI_36393 Sequoiadendron giganteum HOM05D005230 ORTHO05D006506 3.0e-135 486.1 461 65.1
PGR102G1412 Punica granatum HOM05D005230 ORTHO05D006506 6.6e-135 485.0 461 67.2
Nitab4.5_0002567g0160 Nicotiana tabacum HOM05D005230 ORTHO05D006506 4.3e-134 482.3 461 60.3
unitig_0.g309 Utricularia gibba HOM05D005230 ORTHO05D006506 5.6e-134 481.9 461 63.8
Pp3c16_600 Physcomitrium patens HOM05D005230 ORTHO05D006506 1.8e-116 423.7 462 58.4
Mapoly0070s0045 Marchantia polymorpha HOM05D005230 ORTHO05D006506 1.7e-114 417.2 466 54.9
Zm00001eb051600 Zea mays HOM05D005230 ORTHO05D006506 2.7e-112 409.8 364 62.1
SMO117G0151 Selaginella moellendorffii HOM05D005230 ORTHO05D006506 1.4e-100 370.9 461 50.3
TAR628G1140 Trochodendron aralioides HOM05D005230 ORTHO05D006506 9.0e-100 368.2 343 60.1
Dinv24610 Davidia involucrata HOM05D005230 ORTHO05D006506 2.2e-90 337.0 317 61.8
C09p56810 Brassica napus HOM05D005230 ORTHO05D006506 3.9e-87 326.2 290 72.8
Mapoly0050s0011 Marchantia polymorpha HOM05D005230 ORTHO05D006506 3.5e-67 260.0 396 41.2
CBR_g54067 Chara braunii HOM05D005230 ORTHO05D006506 8.5e-66 255.4 461 43.6
BolC9t58535H Brassica oleracea HOM05D005230 ORTHO05D006506 9.1e-60 235.3 189 71.4
Mapoly0050s0012 Marchantia polymorpha HOM05D005230 ORTHO05D006506 1.1e-57 228.4 242 54.5
Cre03.g207825 Chlamydomonas reinhardtii HOM05D005230 ORTHO05D006506 5.7e-54 216.1 507 39.6
Gohir.A05G264150 Gossypium hirsutum HOM05D005230 ORTHO05D006506 4.4e-46 189.9 123 76.4
Duzib150G0729 Durio zibethinus HOM05D005230 ORTHO05D006506 7.5e-46 189.1 163 64.4
MCO03G336 Micromonas commoda HOM05D005230 ORTHO05D006506 1.4e-44 184.9 395 31.6
CSS0018745 Camellia sinensis var. sinensis HOM05D005230 ORTHO05D006506 1.8e-44 184.5 122 77.9
PRCOL_00006600 Prasinoderma coloniale HOM05D005230 ORTHO05D006506 2.8e-40 170.6 507 34.9
FvH4_4g06340 Fragaria vesca HOM05D005230 ORTHO05D006506 1.0e-39 168.7 121 75.2
VMungo0720G0475 Vigna mungo HOM05D005230 ORTHO05D051605 4.1e-36 156.8 134 64.9
Mapoly0070s0046 Marchantia polymorpha HOM05D005230 ORTHO05D006506 8.6e-34 149.1 156 57.7
VMungo0251G1518 Vigna mungo HOM05D005230 ORTHO05D051605 5.6e-25 119.8 220 41.4
Sed0001059 Sechium edule HOM05D005230 ORTHO05D006506 1.9e-20 104.8 101 88.1
BcaC04g24210 Brassica carinata HOM05D005230 ORTHO05D006506 2.7e-19 100.9 68 79.4
Psat2g003760 Pisum sativum HOM05D005230 ORTHO05D006506 2.3e-18 97.8 94 61.7
VMungo1309G2461 Vigna mungo HOM05D002467 ORTHO05D013374 6.6e-18 96.3 105 56.2
Nn7g36957 Nelumbo nucifera HOM05D005230 ORTHO05D006506 2.1e-16 91.3 55 87.3
Psat0s3158g0040 Pisum sativum HOM05D005230 ORTHO05D320643 5.4e-12 76.6 60 61.7
VMungo1383G0996 Vigna mungo HOM05D002467 ORTHO05D013374 4.6e-11 73.6 47 78.7
Psat2g028360 Pisum sativum HOM05D005230 ORTHO05D006506 1.0e-10 72.4 112 46.4
Psat4g142680 Pisum sativum HOM05D000493 ORTHO05D001638 1.0e-10 72.4 61 59.0
Psat4g142760 Pisum sativum HOM05D000493 ORTHO05D004446 2.3e-10 71.2 67 52.2
Psat0s472g0120 Pisum sativum HOM05D005230 ORTHO05D023087 5.1e-10 70.1 62 58.1
Dinv24611 Davidia involucrata HOM05D005230 ORTHO05D006506 1.9e-09 68.2 50 80.0
TAR623G0477 Trochodendron aralioides HOM05D005230 ORTHO05D006506 2.5e-09 67.8 37 94.6
PRCOL_00001177 Prasinoderma coloniale HOM05D004145 ORTHO05D004879 2.1e-08 64.7 267 25.5
Psat5g186320 Pisum sativum HOM05D000280 ORTHO05D004446 3.6e-08 63.9 122 41.8
Peaxi162Scf00225g00424 Petunia axillaris HOM05D004145 ORTHO05D004879 1.8e-07 61.6 247 25.9
Haze_14654 Corylus avellana HOM05D004145 ORTHO05D004879 4.0e-07 60.5 254 25.6
Glyma.03G243100 Glycine max HOM05D004145 ORTHO05D004879 1.2e-06 58.9 242 25.2
Medtr7g115610 Medicago truncatula HOM05D004145 ORTHO05D004879 1.2e-06 58.9 240 25.0
Ca_12868_v3 Cicer arietinum L. HOM05D004145 ORTHO05D004879 1.5e-06 58.5 242 24.4
Nitab4.5_0010351g0020 Nicotiana tabacum HOM05D004145 ORTHO05D004879 2.0e-06 58.2 249 26.1
Solyc01g098180.3 Solanum lycopersicum HOM05D004145 ORTHO05D004879 2.0e-06 58.2 249 25.3
Sopen01g041760 Solanum pennellii HOM05D004145 ORTHO05D004879 2.0e-06 58.2 249 25.3
TWI12G1275 Tripterygium wilfordii HOM05D004145 ORTHO05D004879 2.0e-06 58.2 251 24.7
Cc02_g32210 Coffea canephora HOM05D004145 ORTHO05D004879 2.6e-06 57.8 290 24.5
SMO356G0330 Selaginella moellendorffii HOM05D004145 ORTHO05D004879 2.6e-06 57.8 295 21.4
GSVIVG01026774001 Vitis vinifera HOM05D004145 ORTHO05D004879 2.6e-06 57.8 247 24.7
CARHR129130 Cardamine hirsuta HOM05D004145 ORTHO05D004879 3.4e-06 57.4 247 26.3
MELO3C033360.2 Cucumis melo HOM05D005230 ORTHO05D013374 3.4e-06 57.4 51 62.7
Nitab4.5_0000245g0100 Nicotiana tabacum HOM05D004145 ORTHO05D004879 3.4e-06 57.4 248 25.8
RcHm_v2.0_Chr6g0273391 Rosa chinensis HOM05D004145 ORTHO05D004879 3.4e-06 57.4 249 26.1
Glyma.19G240600 Glycine max HOM05D004145 ORTHO05D004879 4.4e-06 57.0 242 24.8
RcHm_v2.0_Chr4g0430791 Rosa chinensis HOM05D004145 ORTHO05D004879 4.4e-06 57.0 292 24.3
AagrBONN_evm.TU.Sc2ySwM_228.295 Anthoceros agrestis HOM05D004145 ORTHO05D004879 7.6e-06 56.2 264 26.5
BcaB06g28816 Brassica carinata HOM05D004145 ORTHO05D004879 7.6e-06 56.2 186 29.6
CAN.G134.208 Capsicum annuum HOM05D004145 ORTHO05D004879 7.6e-06 56.2 247 25.1
Haze_04291 Corylus avellana HOM05D004145 ORTHO05D004879 7.6e-06 56.2 249 24.5
Psat1g145560 Pisum sativum HOM05D005230 ORTHO05D006506 7.6e-06 56.2 97 43.3
Aa31sc654G10 Aethionema arabicum HOM05D004145 ORTHO05D004879 9.9e-06 55.8 245 26.1


User provided reference genes

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