Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc34.168 Carica papaya HOM05D004851 ORTHO05D006091 6.7e-271 936.8 485 100.0
Prupe.2G329900 Prunus persica HOM05D004851 ORTHO05D006091 4.8e-176 621.7 542 65.1
CiPaw.06G036900 Carya illinoinensis HOM05D004851 ORTHO05D006091 1.8e-175 619.8 540 64.8
Duzib128G1329 Durio zibethinus HOM05D004851 ORTHO05D006091 1.8e-175 619.8 557 63.9
MD06G1015700 Malus domestica HOM05D004851 ORTHO05D006091 5.8e-174 614.8 537 64.6
TWI60G1536 Tripterygium wilfordii HOM05D004851 ORTHO05D006091 1.4e-172 610.1 464 70.3
Ciclev10031158m.g Citrus clementina HOM05D004851 ORTHO05D006091 4.3e-169 598.6 550 61.8
Cfa016106 Carpinus fangiana HOM05D004851 ORTHO05D006091 9.6e-169 597.4 540 63.1
Lj3A883T54 Lonicera japonica HOM05D004851 ORTHO05D006091 3.1e-167 592.4 460 70.0
MD14G1141700 Malus domestica HOM05D004851 ORTHO05D006091 6.9e-167 591.3 541 61.9
Dinv29371 Davidia involucrata HOM05D004851 ORTHO05D006091 1.5e-166 590.1 544 62.5
Duzib106G1281 Durio zibethinus HOM05D004851 ORTHO05D006091 1.5e-166 590.1 554 62.5
CSS0035891 Camellia sinensis var. sinensis HOM05D004851 ORTHO05D006091 2.6e-166 589.3 464 68.5
Actinidia08788 Actinidia chinensis HOM05D004851 ORTHO05D006091 6.4e-165 584.7 457 68.1
RcHm_v2.0_Chr1g0384661 Rosa chinensis HOM05D004851 ORTHO05D006091 1.9e-164 583.2 446 70.9
CsaV3_2G035950 Cucumis sativus L. HOM05D004851 ORTHO05D006091 2.1e-163 579.7 464 67.9
Manes.08G159500 Manihot esculenta HOM05D004851 ORTHO05D006091 2.1e-163 579.7 487 65.7
Hma1.2p1_2196F.1_g316860 Hydrangea macrophylla HOM05D004851 ORTHO05D006091 1.8e-162 576.6 440 70.7
Nitab4.5_0005243g0030 Nicotiana tabacum HOM05D004851 ORTHO05D006091 2.5e-161 572.8 455 66.6
Atru.chr11.646 Acer truncatum HOM05D004851 ORTHO05D006091 5.6e-161 571.6 575 59.3
Rhsim03G0240200 Rhododendron simsii HOM05D004851 ORTHO05D006091 2.1e-160 569.7 543 59.9
MELO3C024747.2 Cucumis melo HOM05D004851 ORTHO05D006091 1.4e-159 567.0 447 68.5
Sed0012488 Sechium edule HOM05D004851 ORTHO05D006091 2.4e-159 566.2 465 67.1
PGR031G1011 Punica granatum HOM05D004851 ORTHO05D006091 4.5e-158 562.0 466 67.0
PGSC0003DMG402016246 Solanum tuberosum HOM05D004851 ORTHO05D006091 7.6e-158 561.2 470 64.9
TAR628G1149 Trochodendron aralioides HOM05D004851 ORTHO05D006091 1.3e-157 560.5 449 68.2
Sopen11g004490 Solanum pennellii HOM05D004851 ORTHO05D006091 4.9e-157 558.5 469 64.6
Solyc11g008710.2 Solanum lycopersicum HOM05D004851 ORTHO05D006091 1.1e-156 557.4 469 64.6
FAN10G2942 Fragaria x ananassa HOM05D004851 ORTHO05D006091 1.2e-155 553.9 482 64.1
Peaxi162Scf00254g00512 Petunia axillaris HOM05D004851 ORTHO05D006091 4.6e-155 552.0 479 62.8
CANSAT01G3202 Cannabis sativa HOM05D004851 ORTHO05D006091 5.1e-154 548.5 514 61.9
Thecc.05G226800 Theobroma cacao HOM05D004851 ORTHO05D006091 5.1e-154 548.5 540 60.7
GSVIVG01020716001 Vitis vinifera HOM05D004851 ORTHO05D006091 2.5e-153 546.2 405 72.1
FAN01G0391 Fragaria x ananassa HOM05D004851 ORTHO05D006091 4.3e-153 545.4 482 63.1
LjContig00389g0015553 Lotus japonicus HOM05D004851 ORTHO05D006091 4.3e-153 545.4 468 63.9
Lj3g0009966 Lotus japonicus HOM05D004851 ORTHO05D006091 7.4e-153 544.7 464 64.7
Eucgr.A00913 Eucalyptus grandis HOM05D004851 ORTHO05D006091 2.2e-152 543.1 460 65.2
FvH4_7g34290 Fragaria vesca HOM05D004851 ORTHO05D006091 2.8e-152 542.7 482 62.9
FAN03G1643 Fragaria x ananassa HOM05D004851 ORTHO05D006091 2.8e-152 542.7 482 62.9
arahy.Tifrunner.gnm1.ann1.NF9HU2 Arachis hypogaea HOM05D004851 ORTHO05D006091 1.8e-151 540.0 498 61.6
arahy.Tifrunner.gnm1.ann1.VYGS4N Arachis hypogaea HOM05D004851 ORTHO05D006091 1.8e-151 540.0 498 61.6
Ca_17637_v3 Cicer arietinum L. HOM05D004851 ORTHO05D006091 1.5e-150 537.0 493 61.5
COL.COLO4_12970 Corchorus olitorius HOM05D004851 ORTHO05D006091 2.2e-149 533.1 566 57.1
Nn4g24557 Nelumbo nucifera HOM05D004851 ORTHO05D006091 6.5e-149 531.6 464 62.7
Sc17g0001530 Simmondsia chinensis HOM05D004851 ORTHO05D006091 8.5e-149 531.2 460 64.8
CAN.G691.8 Capsicum annuum HOM05D004851 ORTHO05D006091 9.3e-148 527.7 469 61.6
Lalb_Chr01g0022101 Lupinus albus HOM05D004851 ORTHO05D006091 2.3e-146 523.1 464 61.6
Psat7g046360 Pisum sativum HOM05D004851 ORTHO05D006091 1.5e-145 520.4 491 59.7
Nitab4.5_0001003g0170 Nicotiana tabacum HOM05D004851 ORTHO05D006091 1.9e-145 520.0 454 62.6
vmacro07474 Vaccinium macrocarpon HOM05D004851 ORTHO05D006091 5.7e-145 518.5 621 50.4
arahy.Tifrunner.gnm1.ann1.UCI1EL Arachis hypogaea HOM05D004851 ORTHO05D006091 7.4e-145 518.1 499 60.9
Lsat_1_v5_gn_3_23200 Lactuca sativa HOM05D004851 ORTHO05D006091 9.7e-145 517.7 464 61.2
Gohir.D13G162900 Gossypium hirsutum HOM05D004851 ORTHO05D006091 2.8e-144 516.2 547 57.2
Sabra13G0065400 Salix brachista HOM05D004851 ORTHO05D006091 3.7e-144 515.8 541 55.8
Potri.013G076200 Populus trichocarpa HOM05D004851 ORTHO05D006091 8.2e-144 514.6 544 56.6
Medtr8g093680 Medicago truncatula HOM05D004851 ORTHO05D006091 1.1e-143 514.2 478 60.9
MBI07_g19429_MAGBIO Magnolia biondii HOM05D004851 ORTHO05D006091 3.1e-143 512.7 520 56.9
THA.LOC104823793 Tarenaya hassleriana HOM05D004851 ORTHO05D006091 3.1e-143 512.7 547 55.6
MBI10_g03402_MAGBIO Magnolia biondii HOM05D004851 ORTHO05D006091 5.3e-143 511.9 505 58.0
TPR.G37402 Trifolium pratense HOM05D004851 ORTHO05D006091 1.5e-142 510.4 493 59.6
Thhalv10002490m.g Eutrema salsugineum HOM05D004851 ORTHO05D006091 7.7e-142 508.1 501 57.9
Phvul.009G105500 Phaseolus vulgaris HOM05D004851 ORTHO05D006091 1.7e-141 506.9 451 63.0
MD07G1311200 Malus domestica HOM05D004851 ORTHO05D006091 2.2e-141 506.5 463 61.8
VMungo0540G0464 Vigna mungo HOM05D004851 ORTHO05D006091 2.2e-141 506.5 450 63.1
Gohir.A13G158200 Gossypium hirsutum HOM05D004851 ORTHO05D006091 2.5e-140 503.1 543 55.8
MSTRG.27417 Avicennia marina HOM05D004851 ORTHO05D006091 5.5e-140 501.9 446 62.6
BolC2t09800H Brassica oleracea HOM05D004851 ORTHO05D006091 4.7e-139 498.8 543 55.4
BcaC03g16030 Brassica carinata HOM05D004851 ORTHO05D006091 1.0e-138 497.7 543 55.2
C02p37840 Brassica napus HOM05D004851 ORTHO05D006091 1.0e-138 497.7 542 55.2
CARHR056280 Cardamine hirsuta HOM05D004851 ORTHO05D006091 1.0e-138 497.7 543 54.9
Carub.0002s0996 Capsella rubella HOM05D004851 ORTHO05D006091 5.1e-138 495.4 548 54.9
Cc09_g04170 Coffea canephora HOM05D004851 ORTHO05D006091 1.1e-137 494.2 404 65.6
Sp5g19120 Schrenkiella parvula HOM05D004851 ORTHO05D006091 2.0e-137 493.4 545 53.9
AT1G64880 Arabidopsis thaliana HOM05D004851 ORTHO05D006091 4.4e-137 492.3 542 54.4
AL2G19340 Arabidopsis lyrata HOM05D004851 ORTHO05D006091 2.2e-136 490.0 544 54.2
Glyma.04G079800 Glycine max HOM05D004851 ORTHO05D006091 8.2e-136 488.0 452 60.4
DCAR_008779 Daucus carota HOM05D004851 ORTHO05D006091 2.4e-135 486.5 421 62.9
BcaB05g23595 Brassica carinata HOM05D004851 ORTHO05D006091 2.0e-134 483.4 467 58.5
BraA02t07394Z Brassica rapa HOM05D004851 ORTHO05D006091 5.9e-134 481.9 539 54.2
ECA246G2460 Erigeron canadensis HOM05D004851 ORTHO05D006091 5.9e-134 481.9 457 59.1
SGA_v2.0_scaffold75G25015 Striga asiatica HOM05D004851 ORTHO05D006091 1.3e-133 480.7 515 54.4
A02p23990 Brassica napus HOM05D004851 ORTHO05D006091 2.2e-133 479.9 539 54.0
HanXRQChr08g0228141 Helianthus annuus HOM05D004851 ORTHO05D006091 2.9e-133 479.6 446 60.8
ATR0787G085 Amborella trichopoda HOM05D004851 ORTHO05D006091 5.0e-133 478.8 468 58.3
PSO170G2140 Papaver somniferum HOM05D004851 ORTHO05D006091 7.2e-132 474.9 459 57.5
PSO017G3120 Papaver somniferum HOM05D004851 ORTHO05D006091 1.2e-131 474.2 459 57.5
Oeu010173.1 Olea europaea HOM05D004851 ORTHO05D006091 3.0e-130 469.5 528 53.6
HPP92_005346 Vanilla planifolia HOM05D004851 ORTHO05D006091 3.9e-130 469.2 446 57.6
Glyma.06G081400 Glycine max HOM05D004851 ORTHO05D006091 1.7e-128 463.8 468 57.3
Gorai.013G185100 Gossypium raimondii HOM05D004851 ORTHO05D006091 5.9e-126 455.3 534 54.5
EL10Ac5g10580 Beta vulgaris HOM05D004851 ORTHO05D006091 2.1e-123 446.8 473 54.1
arahy.Tifrunner.gnm1.ann1.BXG275 Arachis hypogaea HOM05D004851 ORTHO05D006091 1.8e-122 443.7 419 60.9
AUR62008058 Chenopodium quinoa HOM05D004851 ORTHO05D006091 2.8e-120 436.4 474 53.2
Aa31LG2G2120 Aethionema arabicum HOM05D004851 ORTHO05D006091 4.8e-120 435.6 544 49.3
CDE06G0392 Ceratophyllum demersum HOM05D004851 ORTHO05D006091 1.8e-119 433.7 435 55.9
Os02g0102400 Oryza sativa ssp. japonica HOM05D004851 ORTHO05D006091 3.8e-117 426.0 448 52.0
PSO764G0174 Papaver somniferum HOM05D004851 ORTHO05D006091 1.1e-116 424.5 500 52.6
Aqoxy2G03682 Aquilegia oxysepala HOM05D004851 ORTHO05D006091 3.2e-116 422.9 415 58.3
Haze_00351 Corylus avellana HOM05D004851 ORTHO05D006091 3.6e-115 419.5 383 63.2
CDE02G1790 Ceratophyllum demersum HOM05D004851 ORTHO05D006091 1.8e-114 417.2 410 55.6
SalBow1G5096 Salvia bowleyana HOM05D004851 ORTHO05D006091 4.0e-114 416.0 506 50.0
ClCG02G007790 Citrullus lanatus HOM05D004851 ORTHO05D006091 3.4e-113 412.9 303 72.9
ECA246G3904 Erigeron canadensis HOM05D004851 ORTHO05D006091 2.2e-112 410.2 447 51.7
Hma1.2p1_3283F.1_g334850 Hydrangea macrophylla HOM05D004851 ORTHO05D006091 1.1e-111 407.9 287 75.3
Hund19699 Selenicereus undatus HOM05D004851 ORTHO05D006091 1.4e-111 407.5 405 58.8
Hma1.2p1_2196F.1_g316850 Hydrangea macrophylla HOM05D004851 ORTHO05D006091 8.9e-106 388.3 275 74.9
unitig_736.g22500 Utricularia gibba HOM05D004851 ORTHO05D006091 2.8e-104 383.3 408 54.9
Zm00001eb229290 Zea mays HOM05D004851 ORTHO05D006091 2.0e-102 377.1 407 51.1
AUR62028634 Chenopodium quinoa HOM05D004851 ORTHO05D006091 2.3e-101 373.6 473 48.8
SEGI_25717 Sequoiadendron giganteum HOM05D004851 ORTHO05D006091 1.6e-70 271.2 457 38.1
Actinidia27036 Actinidia chinensis HOM05D004851 ORTHO05D006091 2.5e-60 237.3 287 50.2
Ah.02g111010 Amaranthus hybridus HOM05D004851 ORTHO05D006091 1.1e-58 231.9 404 40.1
Hma1.2p1_2196F.1_g316870 Hydrangea macrophylla HOM05D004851 ORTHO05D006091 1.8e-50 204.5 109 89.9
Haze_00352 Corylus avellana HOM05D004851 ORTHO05D006091 3.1e-50 203.8 108 89.8
SalBow1G3109 Salvia bowleyana HOM05D004851 ORTHO05D006091 4.5e-49 199.9 109 88.1
PSO339G3159 Papaver somniferum HOM05D004851 ORTHO05D006091 2.2e-48 197.6 242 49.6
ClCG02G007800 Citrullus lanatus HOM05D004851 ORTHO05D006091 1.4e-47 194.9 107 86.9
Oeu036566.1 Olea europaea HOM05D004851 ORTHO05D006091 7.4e-44 182.6 101 86.1
SalBow1G4565 Salvia bowleyana HOM05D004851 ORTHO05D006091 2.1e-43 181.0 167 59.3
SalBow1G4067 Salvia bowleyana HOM05D004851 ORTHO05D006091 3.7e-43 180.3 111 79.3
SalBow1G6742 Salvia bowleyana HOM05D004851 ORTHO05D006091 1.6e-38 164.9 109 78.0
SalBow1G7753 Salvia bowleyana HOM05D004851 ORTHO05D006091 1.6e-38 164.9 109 78.0
Actinidia20814 Actinidia chinensis HOM05D004851 ORTHO05D006091 5.7e-36 156.4 205 49.8
Mapoly0098s0036 Marchantia polymorpha HOM05D004851 ORTHO05D006091 4.3e-28 130.2 111 56.8
Pp3c8_16260 Physcomitrium patens HOM05D004851 ORTHO05D006091 1.1e-26 125.6 99 62.6
SalBow1G8063 Salvia bowleyana HOM05D004851 ORTHO05D006091 5.3e-26 123.2 130 53.8
CBR_g50476 Chara braunii HOM05D004851 ORTHO05D006091 2.6e-25 120.9 107 56.1
AagrBONN_evm.TU.Sc2ySwM_228.993 Anthoceros agrestis HOM05D004851 ORTHO05D006091 4.5e-25 120.2 104 59.6
RcHm_v2.0_Chr3g0482801 Rosa chinensis HOM05D004851 ORTHO05D006091 1.0e-24 119.0 176 43.8
HanXRQChr17g0540681 Helianthus annuus HOM05D004851 ORTHO05D006091 3.6e-22 110.5 64 85.9
SMO361G0506 Selaginella moellendorffii HOM05D004851 ORTHO05D006091 1.7e-16 91.7 91 48.4
MCO11G545 Micromonas commoda HOM05D004851 ORTHO05D006091 8.5e-16 89.4 101 43.6
RcHm_v2.0_Chr3g0482791 Rosa chinensis HOM05D004851 ORTHO05D006091 9.4e-15 85.9 41 90.2
RcHm_v2.0_Chr3g0482781 Rosa chinensis HOM05D004851 ORTHO05D006091 8.2e-11 72.8 41 85.4
PRCOL_00002029 Prasinoderma coloniale HOM05D004851 ORTHO05D006091 7.7e-09 66.2 91 33.0
Actinidia20815 Actinidia chinensis HOM05D004851 ORTHO05D006091 2.2e-08 64.7 45 68.9
SalBow1G8714 Salvia bowleyana HOM05D004851 ORTHO05D006091 6.5e-08 63.2 93 40.9
PRCOL_00000384 Prasinoderma coloniale HOM05D005621 ORTHO05D007248 1.5e-07 62.0 106 31.1
Actinidia24517 Actinidia chinensis HOM05D004851 ORTHO05D006091 1.2e-06 58.9 104 40.4
Pp3c11_10680 Physcomitrium patens HOM05D005621 ORTHO05D007248 6.1e-06 56.6 79 39.2
Pp3c1_5050 Physcomitrium patens HOM05D005621 ORTHO05D007248 6.1e-06 56.6 79 39.2
Pp3c7_18380 Physcomitrium patens HOM05D005621 ORTHO05D007248 6.1e-06 56.6 79 39.2


User provided reference genes

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