Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc34.147 Carica papaya HOM05D000974 ORTHO05D007456 4.4e-148 528.1 298 100.0
TWI39G1278 Tripterygium wilfordii HOM05D000974 ORTHO05D007456 2.9e-99 365.9 299 66.2
Thecc.03G193600 Theobroma cacao HOM05D000974 ORTHO05D007456 5.5e-98 361.7 295 64.4
GSVIVG01028702001 Vitis vinifera HOM05D000974 ORTHO05D007456 4.6e-97 358.6 297 68.0
Actinidia34202 Actinidia chinensis HOM05D000974 ORTHO05D007456 3.9e-96 355.5 299 66.9
Potri.015G021400 Populus trichocarpa HOM05D000974 ORTHO05D007456 8.7e-96 354.4 296 64.9
Potri.015G021100 Populus trichocarpa HOM05D000974 ORTHO05D007456 1.1e-95 354.0 295 64.1
Ciclev10005489m.g Citrus clementina HOM05D000974 ORTHO05D007456 1.9e-95 353.2 307 62.9
Manes.06G157800 Manihot esculenta HOM05D000974 ORTHO05D007456 1.9e-95 353.2 296 64.5
PGR142G2075 Punica granatum HOM05D000974 ORTHO05D007456 7.4e-95 351.3 306 61.8
Potri.012G031000 Populus trichocarpa HOM05D000974 ORTHO05D007456 3.7e-94 349.0 299 63.2
COL.COLO4_35640 Corchorus olitorius HOM05D000974 ORTHO05D007456 1.4e-93 347.1 295 62.0
Oeu060978.1 Olea europaea HOM05D000974 ORTHO05D007456 9.0e-93 344.4 300 62.0
Prupe.2G308000 Prunus persica HOM05D000974 ORTHO05D002201 1.5e-92 343.6 305 62.0
Cc02_g01830 Coffea canephora HOM05D000974 ORTHO05D007456 2.0e-92 343.2 298 61.4
Haze_00118 Corylus avellana HOM05D000974 ORTHO05D007456 4.5e-92 342.0 298 66.8
CSS0027071 Camellia sinensis var. sinensis HOM05D000974 ORTHO05D007456 2.9e-91 339.3 307 62.5
FAN06G0673 Fragaria x ananassa HOM05D000974 ORTHO05D007456 3.8e-91 339.0 304 60.9
FAN06G4709 Fragaria x ananassa HOM05D000974 ORTHO05D007456 3.8e-91 339.0 304 60.9
FvH4_7g31090 Fragaria vesca HOM05D000974 ORTHO05D007456 1.9e-90 336.7 304 60.5
FAN10G1776 Fragaria x ananassa HOM05D000974 ORTHO05D007456 1.9e-90 336.7 304 60.5
Dinv28331 Davidia involucrata HOM05D000974 ORTHO05D007456 9.3e-90 334.3 253 68.8
Gohir.D09G178500 Gossypium hirsutum HOM05D000974 ORTHO05D007456 1.2e-89 334.0 295 63.4
FAN03G2436 Fragaria x ananassa HOM05D000974 ORTHO05D006000 1.6e-89 333.6 303 59.7
C07p43580 Brassica napus HOM05D000974 ORTHO05D007456 2.7e-89 332.8 316 58.5
BolC7t44885H Brassica oleracea HOM05D000974 ORTHO05D007456 2.7e-89 332.8 316 58.5
ClCG01G000560 Citrullus lanatus HOM05D000974 ORTHO05D007456 2.7e-89 332.8 298 61.1
Gohir.A09G183700 Gossypium hirsutum HOM05D000974 ORTHO05D007456 2.7e-89 332.8 294 63.6
A06p34970 Brassica napus HOM05D000974 ORTHO05D007456 3.5e-89 332.4 316 58.5
BraA06t26421Z Brassica rapa HOM05D000974 ORTHO05D007456 3.5e-89 332.4 316 58.5
AL6G35490 Arabidopsis lyrata HOM05D000974 ORTHO05D007456 4.6e-89 332.0 316 57.9
Gorai.006G200500 Gossypium raimondii HOM05D000974 ORTHO05D007456 4.6e-89 332.0 295 63.7
BcaNung01815 Brassica carinata HOM05D000974 ORTHO05D007456 7.9e-89 331.3 316 58.2
Migut.F00239 Erythranthe guttata HOM05D000974 ORTHO05D007456 7.9e-89 331.3 311 58.2
Thhalv10005277m.g Eutrema salsugineum HOM05D000974 ORTHO05D007456 7.9e-89 331.3 316 58.2
vmacro06564 Vaccinium macrocarpon HOM05D000974 ORTHO05D007456 7.9e-89 331.3 337 55.8
CARHR189450 Cardamine hirsuta HOM05D000974 ORTHO05D007456 1.3e-88 330.5 316 59.2
CsaV3_5G000660 Cucumis sativus L. HOM05D000974 ORTHO05D007456 1.3e-88 330.5 299 60.2
TAR636G3288 Trochodendron aralioides HOM05D000974 ORTHO05D007456 1.8e-88 330.1 298 66.4
FAN10G1818 Fragaria x ananassa HOM05D000974 ORTHO05D006000 2.3e-88 329.7 303 59.4
MD07G1285800 Malus domestica HOM05D000974 ORTHO05D007456 3.0e-88 329.3 309 59.9
Nitab4.5_0002589g0050 Nicotiana tabacum HOM05D000974 ORTHO05D007456 8.7e-88 327.8 295 62.4
Nitab4.5_0005625g0010 Nicotiana tabacum HOM05D000974 ORTHO05D007456 1.1e-87 327.4 298 63.1
RcHm_v2.0_Chr1g0380171 Rosa chinensis HOM05D000974 ORTHO05D007456 1.1e-87 327.4 299 59.2
BcaNung01212 Brassica carinata HOM05D000974 ORTHO05D007456 1.5e-87 327.0 313 58.1
DCAR_020306 Daucus carota HOM05D000974 ORTHO05D007456 1.5e-87 327.0 299 58.5
Peaxi162Scf00904g00123 Petunia axillaris HOM05D000974 ORTHO05D007456 1.5e-87 327.0 298 62.4
AUR62006147 Chenopodium quinoa HOM05D000974 ORTHO05D007456 2.5e-87 326.2 295 60.7
Sabra12G0020600 Salix brachista HOM05D000974 ORTHO05D007456 3.3e-87 325.9 308 58.8
Sp2g23180 Schrenkiella parvula HOM05D000974 ORTHO05D007456 3.3e-87 325.9 317 58.0
THA.LOC104821367 Tarenaya hassleriana HOM05D000974 ORTHO05D007456 5.7e-87 325.1 307 58.3
AT5G24130 Arabidopsis thaliana HOM05D000974 ORTHO05D007456 7.4e-87 324.7 314 56.4
Ca_16682_v3 Cicer arietinum L. HOM05D000974 ORTHO05D007456 1.6e-86 323.6 295 57.3
Carub.0006s2186 Capsella rubella HOM05D000974 ORTHO05D007456 2.1e-86 323.2 315 59.4
PSO135G0499 Papaver somniferum HOM05D000974 ORTHO05D007456 6.3e-86 321.6 302 58.6
PSO384G1506 Papaver somniferum HOM05D000974 ORTHO05D007456 8.2e-86 321.2 300 58.7
Sed0023834 Sechium edule HOM05D000974 ORTHO05D007456 2.4e-85 319.7 298 57.7
EL10Ac3g05342 Beta vulgaris HOM05D000974 ORTHO05D007456 3.1e-85 319.3 306 58.5
Rhsim09G0204100 Rhododendron simsii HOM05D000974 ORTHO05D007456 4.1e-85 318.9 294 59.2
CANSAT21G0519 Cannabis sativa HOM05D000974 ORTHO05D007456 9.0e-85 317.8 316 56.6
arahy.Tifrunner.gnm1.ann1.D5FDUQ Arachis hypogaea HOM05D000974 ORTHO05D007456 1.5e-84 317.0 295 57.6
arahy.Tifrunner.gnm1.ann1.LG8YER Arachis hypogaea HOM05D000974 ORTHO05D007456 1.5e-84 317.0 295 57.6
vmacro10108 Vaccinium macrocarpon HOM05D000974 ORTHO05D007456 2.0e-84 316.6 294 58.8
Aa31LG11G3400 Aethionema arabicum HOM05D000974 ORTHO05D007456 4.5e-84 315.5 312 55.8
Aqoxy7G00132 Aquilegia oxysepala HOM05D000974 ORTHO05D007456 5.9e-84 315.1 304 62.2
MD01G1215900 Malus domestica HOM05D000974 ORTHO05D007456 7.6e-84 314.7 309 57.0
Rhsim03G0199900 Rhododendron simsii HOM05D000974 ORTHO05D007456 2.2e-83 313.2 300 60.7
Glyma.06G125900 Glycine max HOM05D000974 ORTHO05D007456 1.9e-82 310.1 295 55.3
Glyma.04G238050 Glycine max HOM05D000974 ORTHO05D007456 3.2e-82 309.3 295 54.9
Lalb_Chr11g0066601 Lupinus albus HOM05D000974 ORTHO05D007456 4.2e-82 308.9 296 55.7
VMungo1309G2916 Vigna mungo HOM05D000974 ORTHO05D007456 9.3e-82 307.8 301 54.2
Phvul.009G137800 Phaseolus vulgaris HOM05D000974 ORTHO05D007456 3.6e-81 305.8 297 54.5
Medtr3g090955 Medicago truncatula HOM05D000974 ORTHO05D007456 4.6e-81 305.4 297 56.9
TPR.G17305 Trifolium pratense HOM05D000974 ORTHO05D007456 1.3e-80 303.9 301 54.2
AUR62019342 Chenopodium quinoa HOM05D000974 ORTHO05D007456 1.8e-80 303.5 295 58.3
TAR375G0325 Trochodendron aralioides HOM05D000974 ORTHO05D007456 8.7e-80 301.2 300 62.3
Cfa016368 Carpinus fangiana HOM05D000974 ORTHO05D007456 7.4e-79 298.1 300 61.7
Lj1A1013G39 Lonicera japonica HOM05D000974 ORTHO05D007456 9.7e-79 297.7 298 55.4
SalBow4G2102 Salvia bowleyana HOM05D000974 ORTHO05D007456 4.8e-78 295.4 302 56.0
SGA_v2.0_scaffold192G40573 Striga asiatica HOM05D000974 ORTHO05D007456 1.4e-77 293.9 308 54.5
Atru.chr1.258 Acer truncatum HOM05D000974 ORTHO05D007456 2.4e-77 293.1 304 60.9
MBI07_g34227_MAGBIO Magnolia biondii HOM05D000974 ORTHO05D007456 4.5e-76 288.9 300 60.7
Duzib084G1361 Durio zibethinus HOM05D000974 ORTHO05D007456 7.7e-76 288.1 297 61.3
Lsat_1_v5_gn_9_57980 Lactuca sativa HOM05D000974 ORTHO05D007456 1.1e-74 284.3 301 52.5
DCAR_014533 Daucus carota HOM05D000974 ORTHO05D007456 7.2e-74 281.6 297 60.6
HanXRQChr09g0253031 Helianthus annuus HOM05D000974 ORTHO05D007456 3.6e-73 279.3 287 55.7
Lj1g0000480 Lotus japonicus HOM05D000974 ORTHO05D007456 6.1e-73 278.5 297 51.5
ECA232G4254 Erigeron canadensis HOM05D000974 ORTHO05D007456 7.9e-73 278.1 311 54.3
unitig_747.g21851 Utricularia gibba HOM05D000974 ORTHO05D007456 1.0e-72 277.7 265 56.2
Psat5g079560 Pisum sativum HOM05D000974 ORTHO05D007456 3.3e-71 272.7 297 52.2
SalBow4G1511 Salvia bowleyana HOM05D000974 ORTHO05D007456 3.3e-71 272.7 303 56.1
Rhsim09G0204200 Rhododendron simsii HOM05D000974 ORTHO05D007456 4.8e-70 268.9 259 56.8
Nn1g01835 Nelumbo nucifera HOM05D000974 ORTHO05D007456 9.1e-69 264.6 299 58.5
Potri.015G021300 Populus trichocarpa HOM05D000974 ORTHO05D007456 2.6e-68 263.1 204 66.2
Oeu060979.1 Olea europaea HOM05D000974 ORTHO05D007456 4.5e-68 262.3 203 66.0
Lsat_1_v5_gn_2_134181 Lactuca sativa HOM05D000974 ORTHO05D007456 5.9e-68 261.9 264 52.7
HanXRQChr14g0462881 Helianthus annuus HOM05D000974 ORTHO05D007456 6.7e-64 248.4 257 51.8
Lj3A909T48 Lonicera japonica HOM05D000974 ORTHO05D007456 2.0e-63 246.9 277 51.6
HPP92_005207 Vanilla planifolia HOM05D000974 ORTHO05D007456 7.4e-63 245.0 310 51.0
QL09p010742 Quercus lobata HOM05D000974 ORTHO05D007456 1.1e-58 231.1 242 60.3
Zm00001eb238160 Zea mays HOM05D000974 ORTHO05D007456 8.0e-57 224.9 313 47.0
CDE10G0850 Ceratophyllum demersum HOM05D000974 ORTHO05D007456 3.5e-52 209.5 302 49.0
Os02g0257200 Oryza sativa ssp. japonica HOM05D000974 ORTHO05D007456 4.4e-47 192.6 303 49.5
ECA238G2040 Erigeron canadensis HOM05D005084 ORTHO05D006254 1.3e-46 191.0 228 48.2
Zm00001eb345000 Zea mays HOM05D000974 ORTHO05D007456 5.4e-45 185.7 281 44.8
Sopen03g003300 Solanum pennellii HOM05D000974 ORTHO05D007456 1.3e-43 181.0 188 58.5
AagrBONN_evm.TU.Sc2ySwM_117.3541 Anthoceros agrestis HOM05D000974 ORTHO05D007456 8.5e-43 178.3 290 40.0
PGSC0003DMG400009074 Solanum tuberosum HOM05D000974 ORTHO05D007456 1.5e-42 177.6 146 68.5
CiPaw.05G257400 Carya illinoinensis HOM05D000974 ORTHO05D007456 9.5e-42 174.9 134 67.2
Os05g0586700 Oryza sativa ssp. japonica HOM05D000974 ORTHO05D007456 4.7e-41 172.6 311 38.9
MBI07_g45742_MAGBIO Magnolia biondii HOM05D000974 ORTHO05D007456 2.8e-38 163.3 299 39.1
Oeu060977.1 Olea europaea HOM05D000974 ORTHO05D007456 6.3e-38 162.2 119 68.9
Mapoly0123s0011 Marchantia polymorpha HOM05D000974 ORTHO05D007456 9.2e-37 158.3 307 36.8
SMO347G0394 Selaginella moellendorffii HOM05D000974 ORTHO05D007456 1.2e-33 147.9 304 37.2
Actinidia08630 Actinidia chinensis HOM05D000974 ORTHO05D007456 8.9e-32 141.7 112 67.9
Pp3c2_19140 Physcomitrium patens HOM05D000974 ORTHO05D007456 2.0e-31 140.6 304 35.9
Hma1.2p1_1655F.1_g295980 Hydrangea macrophylla HOM05D000974 ORTHO05D007456 3.4e-31 139.8 182 48.9
Lalb_Chr08g0240561 Lupinus albus HOM05D000974 ORTHO05D007456 4.9e-30 136.0 126 55.6
Rhsim02G0197500 Rhododendron simsii HOM05D000974 ORTHO05D007456 9.2e-29 131.7 177 43.5
Rhsim04G0082700 Rhododendron simsii HOM05D000974 ORTHO05D007456 4.6e-28 129.4 177 42.9
CiPaw.05G257300 Carya illinoinensis HOM05D000974 ORTHO05D007456 3.9e-27 126.3 134 55.2
ATR0589G055 Amborella trichopoda HOM05D000974 ORTHO05D007456 6.2e-25 119.0 120 55.0
Lalb_Chr08g0240551 Lupinus albus HOM05D000974 ORTHO05D007456 1.3e-22 111.3 94 55.3
FAN01G0307 Fragaria x ananassa HOM05D000974 ORTHO05D007456 2.0e-20 104.0 304 32.2
Pp3c3_31670 Physcomitrium patens HOM05D000974 ORTHO05D007456 6.0e-20 102.4 157 43.3
vmacro10109 Vaccinium macrocarpon HOM05D000974 ORTHO05D007456 9.5e-18 95.1 150 39.3
TAR629G1462 Trochodendron aralioides HOM05D000974 ORTHO05D007456 3.1e-16 90.1 77 58.4
Lalb_Chr08g0240541 Lupinus albus HOM05D000974 ORTHO05D007456 4.4e-15 86.3 92 52.2
CDE10G0750 Ceratophyllum demersum HOM05D000974 ORTHO05D007456 1.0e-11 75.1 125 45.6
Atru.chr1.262 Acer truncatum HOM05D000974 ORTHO05D007456 2.3e-11 73.9 98 48.0
ATR0589G008 Amborella trichopoda HOM05D000974 ORTHO05D007456 3.1e-08 63.5 96 42.7
DCAR_022594 Daucus carota HOM05D000974 ORTHO05D007456 4.0e-08 63.2 63 58.7


User provided reference genes

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