Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc34.119 Carica papaya HOM05D004441 ORTHO05D003109 4.1e-154 548.1 299 100.0
Haze_13109 Corylus avellana HOM05D010652 ORTHO05D003109 4.9e-30 136.0 313 46.0
QL08p037640 Quercus lobata HOM05D010652 ORTHO05D003109 7.0e-29 132.1 316 43.0
Manes.13G149800 Manihot esculenta HOM05D010652 ORTHO05D003109 1.1e-26 124.8 314 42.4
Lj1A733T64 Lonicera japonica HOM05D009304 ORTHO05D003109 2.5e-26 123.6 314 38.9
Lalb_Chr19g0135401 Lupinus albus HOM05D010177 ORTHO05D003109 2.8e-25 120.2 329 39.2
arahy.Tifrunner.gnm1.ann1.7X1CID Arachis hypogaea HOM05D010177 ORTHO05D003109 4.7e-25 119.4 342 40.9
CANSAT64G2194 Cannabis sativa HOM05D010652 ORTHO05D003109 2.6e-23 113.6 332 40.1
Cfa014564 Carpinus fangiana HOM05D010652 ORTHO05D003109 5.8e-23 112.5 314 43.0
Cc05_g06660 Coffea canephora HOM05D009304 ORTHO05D003109 5.8e-23 112.5 329 38.0
Glyma.15G069600 Glycine max HOM05D004441 ORTHO05D003109 6.4e-22 109.0 298 41.3
Ca_20682_v3 Cicer arietinum L. HOM05D010177 ORTHO05D003109 1.4e-21 107.8 320 37.2
Glyma.13G244100 Glycine max HOM05D004441 ORTHO05D003109 1.4e-21 107.8 296 39.2
VMungo0540G1643 Vigna mungo HOM05D004441 ORTHO05D003109 1.9e-21 107.5 295 39.0
Sabra05G0071200 Salix brachista HOM05D010652 ORTHO05D003109 3.2e-21 106.7 293 42.0
Eucgr.A01789 Eucalyptus grandis HOM05D004441 ORTHO05D003109 9.2e-21 105.1 333 36.9
Lj6g0023239 Lotus japonicus HOM05D004441 ORTHO05D003109 1.6e-20 104.4 297 39.1
arahy.Tifrunner.gnm1.ann1.KXRU9A Arachis hypogaea HOM05D004441 ORTHO05D003109 2.1e-20 104.0 309 36.9
Phvul.006G189700 Phaseolus vulgaris HOM05D004441 ORTHO05D003109 2.7e-20 103.6 293 38.6
SalBow8G3623 Salvia bowleyana HOM05D004441 ORTHO05D003109 7.8e-20 102.1 303 36.0
SalBow8G4382 Salvia bowleyana HOM05D004441 ORTHO05D003109 7.8e-20 102.1 303 36.0
FvH4_6g44980 Fragaria vesca HOM05D010652 ORTHO05D003109 1.0e-19 101.7 334 35.6
Manes.12G087900 Manihot esculenta HOM05D010652 ORTHO05D003109 2.3e-19 100.5 314 37.9
TPR.G36719 Trifolium pratense HOM05D004441 ORTHO05D003109 3.9e-19 99.8 304 37.5
Psat7g199680 Pisum sativum HOM05D010177 ORTHO05D003109 6.6e-19 99.0 324 38.0
FAN14G1127 Fragaria x ananassa HOM05D010652 ORTHO05D003109 8.6e-19 98.6 336 35.4
Glyma.U031310 Glycine max HOM05D010177 ORTHO05D003109 8.6e-19 98.6 312 38.8
FAN09G1981 Fragaria x ananassa HOM05D010652 ORTHO05D003109 1.5e-18 97.8 335 34.9
Glyma.12G108500 Glycine max HOM05D010177 ORTHO05D003109 1.9e-18 97.4 315 40.0
Hma1.2p1_0191F.1_g083410 Hydrangea macrophylla HOM05D004441 ORTHO05D003109 3.3e-18 96.7 317 34.7
Hma1.2p1_2209F.1_g317155 Hydrangea macrophylla HOM05D004441 ORTHO05D003109 3.3e-18 96.7 317 34.7
Medtr2g012750 Medicago truncatula HOM05D004441 ORTHO05D003109 3.3e-18 96.7 299 39.1
TAR629G3100 Trochodendron aralioides HOM05D004441 ORTHO05D003109 4.3e-18 96.3 319 35.7
Aqoxy1G02647 Aquilegia oxysepala HOM05D004441 ORTHO05D003109 1.6e-17 94.4 335 35.2
Lsat_1_v5_gn_4_70241 Lactuca sativa HOM05D009304 ORTHO05D003109 3.6e-17 93.2 310 35.5
Dinv40519 Davidia involucrata HOM05D004441 ORTHO05D003109 4.7e-17 92.8 304 39.1
Lj1A1210T53 Lonicera japonica HOM05D004441 ORTHO05D003109 8.1e-17 92.0 311 37.0
CiPaw.09G160900 Carya illinoinensis HOM05D004441 ORTHO05D003109 1.1e-16 91.7 322 37.0
Duzib192G0975 Durio zibethinus HOM05D004441 ORTHO05D003109 3.1e-16 90.1 331 34.1
TWI63G0258 Tripterygium wilfordii HOM05D004441 ORTHO05D003109 3.1e-16 90.1 310 35.5
Psat1g207120 Pisum sativum HOM05D004441 ORTHO05D003109 5.2e-16 89.4 298 36.6
Dinv23691 Davidia involucrata HOM05D009304 ORTHO05D003109 8.9e-16 88.6 259 37.8
TAR626G0020 Trochodendron aralioides HOM05D004441 ORTHO05D003109 8.9e-16 88.6 270 36.3
Prupe.4G040000 Prunus persica HOM05D004441 ORTHO05D003109 2.6e-15 87.0 342 34.5
Solyc07g054560.1 Solanum lycopersicum HOM05D009304 ORTHO05D003109 3.4e-15 86.7 324 36.7
Ca_01527_v3 Cicer arietinum L. HOM05D010177 ORTHO05D003109 1.3e-14 84.7 302 35.1
Sopen07g028460 Solanum pennellii HOM05D009304 ORTHO05D003109 1.3e-14 84.7 324 35.5
Phvul.011G112800 Phaseolus vulgaris HOM05D010177 ORTHO05D003109 1.7e-14 84.3 322 38.5
Ca_00297_v3 Cicer arietinum L. HOM05D004441 ORTHO05D003109 2.2e-14 84.0 307 34.9
Potri.007G078350 Populus trichocarpa HOM05D010652 ORTHO05D003109 2.2e-14 84.0 219 42.9
Potri.005G086300 Populus trichocarpa HOM05D010652 ORTHO05D003109 3.8e-14 83.2 260 43.1
Thecc.06G194800 Theobroma cacao HOM05D004441 ORTHO05D003109 4.9e-14 82.8 316 36.4
DCAR_004123 Daucus carota HOM05D004441 ORTHO05D003109 6.4e-14 82.4 307 35.8
PGR042G0321 Punica granatum HOM05D004441 ORTHO05D003109 6.4e-14 82.4 334 35.3
Sc17g0006420 Simmondsia chinensis HOM05D004441 ORTHO05D003109 6.4e-14 82.4 349 35.0
FAN05G0655 Fragaria x ananassa HOM05D010652 ORTHO05D003109 8.4e-14 82.0 325 35.1
FAN05G4761 Fragaria x ananassa HOM05D010652 ORTHO05D003109 8.4e-14 82.0 325 35.1
TAR627G0319 Trochodendron aralioides HOM05D004441 ORTHO05D003109 8.4e-14 82.0 212 37.3
arahy.Tifrunner.gnm1.ann1.48X98F Arachis hypogaea HOM05D010177 ORTHO05D003109 1.1e-13 81.6 310 34.8
MD10G1300500 Malus domestica HOM05D004441 ORTHO05D003109 1.1e-13 81.6 348 33.0
Actinidia11074 Actinidia chinensis HOM05D002331 ORTHO05D003109 1.4e-13 81.3 298 36.2
Nitab4.5_0003018g0090 Nicotiana tabacum HOM05D009304 ORTHO05D003109 1.4e-13 81.3 328 35.4
Psat5g270560 Pisum sativum HOM05D010177 ORTHO05D003109 1.9e-13 80.9 314 34.1
Medtr2g090150 Medicago truncatula HOM05D010177 ORTHO05D003109 2.4e-13 80.5 314 38.2
PGSC0003DMG400018324 Solanum tuberosum HOM05D009304 ORTHO05D003109 2.4e-13 80.5 326 35.0
Sabra11G0031800 Salix brachista HOM05D004441 ORTHO05D003109 3.2e-13 80.1 333 33.9
FAN16G1227 Fragaria x ananassa HOM05D004441 ORTHO05D003109 4.2e-13 79.7 317 35.6
PSO675G8062 Papaver somniferum HOM05D004441 ORTHO05D003109 5.4e-13 79.3 344 31.7
Nitab4.5_0001820g0050 Nicotiana tabacum HOM05D004441 ORTHO05D003109 7.1e-13 79.0 306 36.6
ClCG03G005640 Citrullus lanatus HOM05D004441 ORTHO05D003109 1.6e-12 77.8 310 32.3
VMungo1127G1338 Vigna mungo HOM05D010177 ORTHO05D003109 1.6e-12 77.8 326 35.3
PGR004G2153 Punica granatum HOM05D004441 ORTHO05D003109 2.1e-12 77.4 352 33.2
Aqoxy4G01294 Aquilegia oxysepala HOM05D004441 ORTHO05D003109 2.7e-12 77.0 301 34.9
arahy.Tifrunner.gnm1.ann1.W0S7NR Arachis hypogaea HOM05D004441 ORTHO05D003109 2.7e-12 77.0 231 36.4
Lj3g0011122 Lotus japonicus HOM05D010177 ORTHO05D003109 3.5e-12 76.6 346 32.7
Nitab4.5_0007319g0010 Nicotiana tabacum HOM05D004441 ORTHO05D003109 4.6e-12 76.3 306 36.9
Sed0013174 Sechium edule HOM05D004441 ORTHO05D003109 4.6e-12 76.3 258 35.3
Hma1.2p1_0835F.1_g225850 Hydrangea macrophylla HOM05D004441 ORTHO05D003109 6.0e-12 75.9 296 35.1
Hma1.2p1_0835F.1_g225855 Hydrangea macrophylla HOM05D004441 ORTHO05D003109 6.0e-12 75.9 296 35.1
Lalb_Chr15g0089961 Lupinus albus HOM05D004441 ORTHO05D003109 6.0e-12 75.9 312 33.7
Atru.chr6.3043 Acer truncatum HOM05D010652 ORTHO05D003109 7.8e-12 75.5 155 47.7
FAN25G3261 Fragaria x ananassa HOM05D004441 ORTHO05D003109 1.0e-11 75.1 316 34.8
Potri.011G045700 Populus trichocarpa HOM05D004441 ORTHO05D003109 1.3e-11 74.7 328 37.5
VMungo1080G0072 Vigna mungo HOM05D010177 ORTHO05D003109 1.3e-11 74.7 303 36.3
ClCG02G001220 Citrullus lanatus HOM05D032711 ORTHO05D003109 1.7e-11 74.3 301 35.2
DCAR_009737 Daucus carota HOM05D009304 ORTHO05D003109 1.7e-11 74.3 307 34.2
FvH4_3g04520 Fragaria vesca HOM05D004441 ORTHO05D003109 1.7e-11 74.3 322 35.4
FAN11G1619 Fragaria x ananassa HOM05D004441 ORTHO05D003109 2.3e-11 73.9 318 35.2
CSS0013822 Camellia sinensis var. sinensis HOM05D009304 ORTHO05D003109 3.0e-11 73.6 313 35.5
Peaxi162Scf00007g00287 Petunia axillaris HOM05D009304 ORTHO05D003109 3.0e-11 73.6 268 36.9
Dinv01395 Davidia involucrata HOM05D009304 ORTHO05D003109 8.7e-11 72.0 215 36.3
Glyma.13G299800 Glycine max HOM05D010177 ORTHO05D003109 8.7e-11 72.0 300 37.7
Duzib160G0195 Durio zibethinus HOM05D004441 ORTHO05D003109 1.1e-10 71.6 318 33.6
CiPaw.03G171700 Carya illinoinensis HOM05D004441 ORTHO05D003109 1.5e-10 71.2 317 35.6
Nitab4.5_0002370g0010 Nicotiana tabacum HOM05D009304 ORTHO05D003109 1.5e-10 71.2 292 36.0
TWI38G0459 Tripterygium wilfordii HOM05D004441 ORTHO05D003109 1.9e-10 70.9 326 33.4
CSS0028025 Camellia sinensis var. sinensis HOM05D009304 ORTHO05D003109 2.5e-10 70.5 313 35.5
CsaV3_1G011910 Cucumis sativus L. HOM05D004441 ORTHO05D003109 2.5e-10 70.5 317 33.4
Gohir.D05G166400 Gossypium hirsutum HOM05D004441 ORTHO05D003109 2.5e-10 70.5 326 32.2
RcHm_v2.0_Chr5g0007441 Rosa chinensis HOM05D004441 ORTHO05D003109 2.5e-10 70.5 334 33.2
COL.COLO4_13710 Corchorus olitorius HOM05D053928 ORTHO05D003109 3.3e-10 70.1 306 37.3
Gorai.009G171500 Gossypium raimondii HOM05D004441 ORTHO05D003109 3.3e-10 70.1 323 32.2
Rhsim13G0175700 Rhododendron simsii HOM05D004441 ORTHO05D003109 3.3e-10 70.1 316 34.2
Sed0017971 Sechium edule HOM05D002331 ORTHO05D002624 3.3e-10 70.1 300 35.7
Ciclev10015894m.g Citrus clementina HOM05D004441 ORTHO05D003109 4.3e-10 69.7 351 29.1
Cc00_g11510 Coffea canephora HOM05D004441 ORTHO05D003109 4.3e-10 69.7 318 34.6
Gohir.A06G124300 Gossypium hirsutum HOM05D004441 ORTHO05D003109 4.3e-10 69.7 311 32.8
Sed0005410 Sechium edule HOM05D002331 ORTHO05D002624 4.3e-10 69.7 293 35.8
Oeu025512.1 Olea europaea HOM05D009304 ORTHO05D003109 5.6e-10 69.3 313 30.7
COL.COLO4_31538 Corchorus olitorius HOM05D004441 ORTHO05D003109 7.3e-10 68.9 330 33.0
Eucgr.D00694 Eucalyptus grandis HOM05D004441 ORTHO05D003109 9.6e-10 68.6 309 32.7
Gohir.A05G163400 Gossypium hirsutum HOM05D004441 ORTHO05D003109 9.6e-10 68.6 324 32.1
MBI18_g13205_MAGBIO Magnolia biondii HOM05D004441 ORTHO05D003109 1.3e-09 68.2 308 37.7
Medtr4g046123 Medicago truncatula HOM05D010177 ORTHO05D003109 1.3e-09 68.2 214 41.1
MELO3C007307.2 Cucumis melo HOM05D004441 ORTHO05D003109 1.6e-09 67.8 305 29.5
CsaV3_7G004220 Cucumis sativus L. HOM05D032711 ORTHO05D003109 2.1e-09 67.4 303 36.6
Gorai.010G150800 Gossypium raimondii HOM05D004441 ORTHO05D003109 2.1e-09 67.4 310 32.3
CsaV3_6G049880 Cucumis sativus L. HOM05D004441 ORTHO05D003109 3.6e-09 66.6 299 30.8
Gohir.D06G129200 Gossypium hirsutum HOM05D004441 ORTHO05D003109 3.6e-09 66.6 310 32.6
Thecc.02G174400 Theobroma cacao HOM05D053928 ORTHO05D003109 6.2e-09 65.9 263 38.8
Ah.09g235850 Amaranthus hybridus HOM05D004441 ORTHO05D003109 8.1e-09 65.5 319 29.8
ECA234G0694 Erigeron canadensis HOM05D009304 ORTHO05D003109 1.1e-08 65.1 327 31.5
FAN21G2327 Fragaria x ananassa HOM05D004441 ORTHO05D003109 1.4e-08 64.7 314 31.8
Lj3g0005406 Lotus japonicus HOM05D010177 ORTHO05D003109 1.4e-08 64.7 312 35.3
Lsat_1_v5_gn_4_55461 Lactuca sativa HOM05D004441 ORTHO05D003109 1.8e-08 64.3 302 34.8
Manes.17G041200 Manihot esculenta HOM05D004441 ORTHO05D003109 1.8e-08 64.3 326 34.7
Oeu026007.1 Olea europaea HOM05D004441 ORTHO05D003109 1.8e-08 64.3 329 34.3
Nn1g03959 Nelumbo nucifera HOM05D004441 ORTHO05D003109 2.4e-08 63.9 166 34.9
Oeu029188.1 Olea europaea HOM05D004441 ORTHO05D003109 2.4e-08 63.9 320 31.9
PSO541G1557 Papaver somniferum HOM05D004441 ORTHO05D003109 3.1e-08 63.5 343 28.9
Sabra04G0022600 Salix brachista HOM05D004441 ORTHO05D003109 3.1e-08 63.5 328 34.5
Potri.004G037100 Populus trichocarpa HOM05D004441 ORTHO05D003109 4.0e-08 63.2 335 37.0
Thhalv10026095m.g Eutrema salsugineum HOM05D012054 ORTHO05D013946 5.3e-08 62.8 295 31.2
Actinidia05598 Actinidia chinensis HOM05D004441 ORTHO05D003109 9.0e-08 62.0 216 39.8
Lalb_Chr22g0356441 Lupinus albus HOM05D010177 ORTHO05D003109 9.0e-08 62.0 314 34.1
ECA236G4168 Erigeron canadensis HOM05D004441 ORTHO05D003109 1.2e-07 61.6 309 32.7
ClCG00G003130 Citrullus lanatus HOM05D004441 ORTHO05D003109 1.5e-07 61.2 298 31.2
ClCG01G022730 Citrullus lanatus HOM05D004441 ORTHO05D003109 1.5e-07 61.2 298 31.2
Cfa000385 Carpinus fangiana HOM05D004441 ORTHO05D003109 2.0e-07 60.8 320 29.7
TPR.G40438 Trifolium pratense HOM05D010177 ORTHO05D003109 2.0e-07 60.8 164 40.9
Hma1.2p1_0875F.1_g231510 Hydrangea macrophylla HOM05D009304 ORTHO05D003109 2.6e-07 60.5 312 30.8
Medtr4g089190 Medicago truncatula HOM05D004441 ORTHO05D003109 2.6e-07 60.5 298 30.9
Lsat_1_v5_gn_7_20000 Lactuca sativa HOM05D004441 ORTHO05D003109 4.4e-07 59.7 299 35.5
Aa31LG11G1710 Aethionema arabicum HOM05D012054 ORTHO05D013946 5.8e-07 59.3 315 32.4
Haze_06542 Corylus avellana HOM05D004441 ORTHO05D003109 5.8e-07 59.3 320 30.9
Dinv39787 Davidia involucrata HOM05D004441 ORTHO05D003109 1.3e-06 58.2 301 36.2
Glyma.13G184100 Glycine max HOM05D004441 ORTHO05D003109 1.3e-06 58.2 298 29.5
PGR142G1157 Punica granatum HOM05D010652 ORTHO05D003109 1.3e-06 58.2 289 33.2
Solyc02g078760.1 Solanum lycopersicum HOM05D004441 ORTHO05D003109 1.3e-06 58.2 316 34.5
Peaxi162Scf00612g00043 Petunia axillaris HOM05D004441 ORTHO05D003109 1.7e-06 57.8 173 39.3
Cpa.g.sc27.93 Carica papaya HOM05D004441 ORTHO05D003109 2.2e-06 57.4 323 33.7
FAN02G3640 Fragaria x ananassa HOM05D002331 ORTHO05D002624 2.9e-06 57.0 256 35.2
Lalb_Chr20g0122111 Lupinus albus HOM05D004441 ORTHO05D003109 2.9e-06 57.0 330 30.6
Phvul.005G106600 Phaseolus vulgaris HOM05D010177 ORTHO05D003109 4.9e-06 56.2 300 32.7
Migut.M01162 Erythranthe guttata HOM05D004441 ORTHO05D003109 6.4e-06 55.8 319 30.7
Atru.chr6.3042 Acer truncatum HOM05D010652 ORTHO05D003109 8.4e-06 55.5 108 44.4


User provided reference genes

Program Settings