Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc33.48 Carica papaya HOM05D007686 ORTHO05D009709 1.1e-113 414.8 621 100.0
arahy.Tifrunner.gnm1.ann1.BXJH78 Arachis hypogaea HOM05D007686 ORTHO05D009709 4.0e-26 124.0 84 72.6
Dinv14741 Davidia involucrata HOM05D007686 ORTHO05D009709 8.9e-26 122.9 83 71.1
Gohir.A04G137000 Gossypium hirsutum HOM05D007686 ORTHO05D009709 1.5e-25 122.1 81 69.1
Ciclev10031251m.g Citrus clementina HOM05D007686 ORTHO05D009709 2.0e-25 121.7 80 73.8
Lalb_Chr07g0185471 Lupinus albus HOM05D007686 ORTHO05D009709 2.6e-25 121.3 84 71.4
CiPaw.05G168000 Carya illinoinensis HOM05D007686 ORTHO05D009709 3.4e-25 120.9 81 70.4
FAN12G1967 Fragaria x ananassa HOM05D007686 ORTHO05D009709 3.4e-25 120.9 79 72.2
Gohir.D04G180200 Gossypium hirsutum HOM05D007686 ORTHO05D009709 5.8e-25 120.2 83 67.5
Thecc.02G263700 Theobroma cacao HOM05D007686 ORTHO05D009709 9.8e-25 119.4 81 70.4
TWI18G1075 Tripterygium wilfordii HOM05D007686 ORTHO05D009709 9.8e-25 119.4 78 71.8
RcHm_v2.0_Chr4g0432731 Rosa chinensis HOM05D007686 ORTHO05D009709 3.7e-24 117.5 80 68.8
CANSAT01G2773 Cannabis sativa HOM05D007686 ORTHO05D009709 4.9e-24 117.1 79 70.9
TWI36G0128 Tripterygium wilfordii HOM05D007686 ORTHO05D009709 4.9e-24 117.1 83 68.7
PGR119G1810 Punica granatum HOM05D007686 ORTHO05D009709 8.3e-24 116.3 77 72.7
Glyma.08G131100 Glycine max HOM05D007686 ORTHO05D009709 3.2e-23 114.4 80 71.2
Prupe.1G242700 Prunus persica HOM05D007686 ORTHO05D009709 3.2e-23 114.4 77 68.8
TPR.G6255 Trifolium pratense HOM05D007686 ORTHO05D009709 7.0e-23 113.2 84 67.9
Phvul.002G258900 Phaseolus vulgaris HOM05D007686 ORTHO05D009709 9.2e-23 112.8 80 70.0
CsaV3_5G030960 Cucumis sativus L. HOM05D007686 ORTHO05D009709 1.6e-22 112.1 79 67.1
Potri.008G185000 Populus trichocarpa HOM05D007686 ORTHO05D009709 1.6e-22 112.1 83 65.1
Glyma.05G173932 Glycine max HOM05D007686 ORTHO05D009709 2.0e-22 111.7 80 68.8
HanXRQChr08g0208401 Helianthus annuus HOM05D007686 ORTHO05D009709 4.6e-22 110.5 78 64.1
Eucgr.H02473 Eucalyptus grandis HOM05D007686 ORTHO05D009709 1.0e-21 109.4 260 75.4
Manes.13G022000 Manihot esculenta HOM05D007686 ORTHO05D009709 1.0e-21 109.4 83 65.1
Psat7g058760 Pisum sativum HOM05D007686 ORTHO05D009709 2.3e-21 108.2 84 63.1
Sabra08G0140000 Salix brachista HOM05D007686 ORTHO05D009709 2.3e-21 108.2 83 62.7
Sed0013465 Sechium edule HOM05D007686 ORTHO05D009709 8.6e-21 106.3 77 66.2
Manes.13G021400 Manihot esculenta HOM05D007686 ORTHO05D009709 1.1e-20 105.9 83 62.7
Medtr8g089700 Medicago truncatula HOM05D007686 ORTHO05D009709 1.1e-20 105.9 84 63.1
ClCG05G025900 Citrullus lanatus HOM05D007686 ORTHO05D009709 1.9e-20 105.1 75 65.3
Migut.K00622 Erythranthe guttata HOM05D007686 ORTHO05D009709 7.3e-20 103.2 80 60.0
Lj4g0016926 Lotus japonicus HOM05D007686 ORTHO05D009709 7.3e-20 103.2 87 60.9
SGA_v2.0_scaffold100G29576 Striga asiatica HOM05D007686 ORTHO05D009709 7.3e-20 103.2 81 58.0
Ca_17785_v3 Cicer arietinum L. HOM05D007686 ORTHO05D009709 1.6e-19 102.1 84 60.7
ECA233G6157 Erigeron canadensis HOM05D007686 ORTHO05D009709 2.1e-19 101.7 76 63.2
MD13G1103100 Malus domestica HOM05D007686 ORTHO05D009709 6.8e-18 96.7 67 68.7
MBI17_g12881_MAGBIO Magnolia biondii HOM05D007686 ORTHO05D009709 4.4e-17 94.0 71 64.8
CDE05G1633 Ceratophyllum demersum HOM05D000570 ORTHO05D001174 7.5e-17 93.2 73 61.6
Gorai.012G173300 Gossypium raimondii HOM05D007686 ORTHO05D009709 9.8e-17 92.8 66 65.2
Lj3P1060G37 Lonicera japonica HOM05D007686 ORTHO05D009709 1.7e-16 92.0 66 63.6
Nitab4.5_0000067g0230 Nicotiana tabacum HOM05D007686 ORTHO05D009709 2.2e-16 91.7 62 67.7
SHI17831 Sapria himalayana HOM05D007686 ORTHO05D009709 2.9e-16 91.3 81 60.5
AUR62011787 Chenopodium quinoa HOM05D007686 ORTHO05D009709 4.9e-16 90.5 69 65.2
DCAR_031167 Daucus carota HOM05D002540 ORTHO05D002672 4.9e-16 90.5 67 62.7
Nitab4.5_0001839g0010 Nicotiana tabacum HOM05D007686 ORTHO05D009709 4.9e-16 90.5 62 67.7
Solyc06g008190.1 Solanum lycopersicum HOM05D007686 ORTHO05D009709 8.3e-16 89.7 67 62.7
Sopen06g003050 Solanum pennellii HOM05D007686 ORTHO05D009709 8.3e-16 89.7 67 62.7
MSTRG.555 Avicennia marina HOM05D007686 ORTHO05D009709 1.1e-15 89.4 66 65.2
CSS0050065 Camellia sinensis var. sinensis HOM05D007686 ORTHO05D009709 1.1e-15 89.4 62 69.4
QL03p056833 Quercus lobata HOM05D007686 ORTHO05D009709 1.1e-15 89.4 54 75.9
QL93p1848_0021 Quercus lobata HOM05D007686 ORTHO05D009709 1.1e-15 89.4 54 75.9
Rhsim12G0039200 Rhododendron simsii HOM05D007686 ORTHO05D009709 2.4e-15 88.2 58 72.4
GSVIVG01000559001 Vitis vinifera HOM05D007686 ORTHO05D009709 2.4e-15 88.2 59 71.2
Atru.chr11.2166 Acer truncatum HOM05D007686 ORTHO05D009709 2.1e-14 85.1 49 81.6
Gohir.A03G132900 Gossypium hirsutum HOM05D007686 ORTHO05D009709 2.7e-14 84.7 49 77.6
COL.COLO4_23488 Corchorus olitorius HOM05D007686 ORTHO05D009709 3.5e-14 84.3 47 80.9
Hma1.2p1_0815F.1_g222720 Hydrangea macrophylla HOM05D007686 ORTHO05D009709 3.5e-14 84.3 60 66.7
THA.LOC104805275 Tarenaya hassleriana HOM05D007686 ORTHO05D009709 2.3e-13 81.6 50 78.0
Carub.0001s1279 Capsella rubella HOM05D007686 ORTHO05D009709 3.9e-13 80.9 53 71.7
MD16G1103300 Malus domestica HOM05D007686 ORTHO05D009709 3.9e-13 80.9 59 66.1
AT1G13040 Arabidopsis thaliana HOM05D007686 ORTHO05D009709 5.1e-13 80.5 53 71.7
AL1G24690 Arabidopsis lyrata HOM05D007686 ORTHO05D009709 6.6e-13 80.1 53 71.7
Sp1g11590 Schrenkiella parvula HOM05D007686 ORTHO05D009709 6.6e-13 80.1 53 71.7
Os07g0688100 Oryza sativa ssp. japonica HOM05D007686 ORTHO05D009709 1.1e-12 79.3 75 50.7
EL10Ac7g16785 Beta vulgaris HOM05D007686 ORTHO05D009709 1.5e-12 79.0 65 61.5
BcaC05g25091 Brassica carinata HOM05D007686 ORTHO05D009709 2.5e-12 78.2 51 72.5
A06p08670 Brassica napus HOM05D002540 ORTHO05D002672 2.5e-12 78.2 51 72.5
BolC5t29774H Brassica oleracea HOM05D007686 ORTHO05D009709 2.5e-12 78.2 51 72.5
BraA06t24064Z Brassica rapa HOM05D007686 ORTHO05D009709 2.5e-12 78.2 51 72.5
Zm00001eb331140 Zea mays HOM05D007686 ORTHO05D009709 4.3e-12 77.4 73 53.4
C05p10280 Brassica napus HOM05D002540 ORTHO05D002672 5.6e-12 77.0 51 70.6
Aa31LG1G1760 Aethionema arabicum HOM05D007686 ORTHO05D009709 1.6e-11 75.5 52 67.3
Sc06g0009620 Simmondsia chinensis HOM05D007686 ORTHO05D009709 2.8e-11 74.7 50 72.0
CARHR013370 Cardamine hirsuta HOM05D007686 ORTHO05D009709 3.6e-11 74.3 51 70.6
Thhalv10007381m.g Eutrema salsugineum HOM05D007686 ORTHO05D009709 4.7e-11 73.9 51 68.6
C08p15790 Brassica napus HOM05D002540 ORTHO05D002672 1.1e-10 72.8 51 68.6
BolC8t49205H Brassica oleracea HOM05D002540 ORTHO05D002672 1.1e-10 72.8 51 68.6
Lsat_1_v5_gn_8_152860 Lactuca sativa HOM05D007686 ORTHO05D009709 1.8e-10 72.0 49 63.3
PSO724G0460 Papaver somniferum HOM05D007686 ORTHO05D009709 1.8e-10 72.0 59 61.0
FvH4_4g25420 Fragaria vesca HOM05D007686 ORTHO05D009709 2.3e-10 71.6 47 70.2
A08p32500 Brassica napus HOM05D007686 ORTHO05D009709 3.1e-10 71.2 51 68.6
BraA08t35174Z Brassica rapa HOM05D007686 ORTHO05D009709 3.1e-10 71.2 51 68.6
PSO135G0590 Papaver somniferum HOM05D007686 ORTHO05D009709 1.2e-09 69.3 57 61.4
Aqoxy2G03020 Aquilegia oxysepala HOM05D007686 ORTHO05D009709 1.5e-09 68.9 47 74.5
PGSC0003DMG400014696 Solanum tuberosum HOM05D007686 ORTHO05D009709 3.4e-09 67.8 47 66.0
TAR383G0079 Trochodendron aralioides HOM05D007686 ORTHO05D009709 1.3e-08 65.9 45 71.1
Oeu049173.1 Olea europaea HOM05D007686 ORTHO05D009709 2.9e-08 64.7 45 57.8
Gorai.005G176400 Gossypium raimondii HOM05D007686 ORTHO05D009709 8.4e-08 63.2 56 57.1
HPP92_012781 Vanilla planifolia HOM05D007686 ORTHO05D009709 5.4e-07 60.5 40 67.5


User provided reference genes

Program Settings