Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc33.204 Carica papaya HOM05D004316 ORTHO05D005149 2.0e-237 825.5 456 100.0
Duzib128G1660 Durio zibethinus HOM05D004316 ORTHO05D005149 4.2e-126 455.7 466 57.3
COL.COLO4_28298 Corchorus olitorius HOM05D004316 ORTHO05D005149 1.5e-123 447.2 473 56.0
Thecc.05G152800 Theobroma cacao HOM05D004316 ORTHO05D005149 5.7e-123 445.3 466 57.5
Potri.006G050100 Populus trichocarpa HOM05D004316 ORTHO05D005149 1.7e-122 443.7 460 61.1
Duzib093G1448 Durio zibethinus HOM05D004316 ORTHO05D005149 3.5e-120 436.0 467 55.7
Duzib152G0001 Durio zibethinus HOM05D004316 ORTHO05D005149 2.9e-119 433.0 461 55.7
Gohir.A01G131000 Gossypium hirsutum HOM05D004316 ORTHO05D005149 6.6e-119 431.8 384 61.5
Gorai.002G147000 Gossypium raimondii HOM05D004316 ORTHO05D005149 7.3e-118 428.3 385 60.8
Cfa016810 Carpinus fangiana HOM05D004316 ORTHO05D005149 1.6e-117 427.2 373 61.9
Gohir.D01G120400 Gossypium hirsutum HOM05D004316 ORTHO05D005149 6.1e-117 425.2 385 60.8
Potri.016G056300 Populus trichocarpa HOM05D004316 ORTHO05D005149 4.0e-116 422.5 467 53.1
Sabra16G0058800 Salix brachista HOM05D004316 ORTHO05D005149 8.9e-116 421.4 468 52.6
CiPaw.09G038700 Carya illinoinensis HOM05D004316 ORTHO05D005149 7.5e-115 418.3 479 52.6
Duzib106G1406 Durio zibethinus HOM05D004316 ORTHO05D005149 9.8e-115 417.9 466 54.3
Haze_19850 Corylus avellana HOM05D004316 ORTHO05D005149 1.3e-114 417.5 375 60.8
Manes.09G020900 Manihot esculenta HOM05D004316 ORTHO05D005149 4.9e-114 415.6 467 54.2
QL07p000671 Quercus lobata HOM05D004316 ORTHO05D005149 1.1e-113 414.5 445 56.4
CiPaw.10G033700 Carya illinoinensis HOM05D004316 ORTHO05D005149 8.6e-111 404.8 405 56.0
Ciclev10004677m.g Citrus clementina HOM05D004316 ORTHO05D005149 1.9e-110 403.7 497 55.3
Atru.chr1.1110 Acer truncatum HOM05D004316 ORTHO05D005149 1.6e-109 400.6 473 55.2
TWI74G1076 Tripterygium wilfordii HOM05D004316 ORTHO05D005149 4.4e-107 392.5 457 54.7
Prupe.7G058900 Prunus persica HOM05D004316 ORTHO05D005149 4.9e-106 389.0 405 58.0
PGR004G2076 Punica granatum HOM05D004316 ORTHO05D005149 1.1e-105 387.9 381 59.6
Dinv12489 Davidia involucrata HOM05D004316 ORTHO05D005149 7.0e-105 385.2 455 55.6
MD12G1074600 Malus domestica HOM05D004316 ORTHO05D005149 5.0e-103 379.0 471 56.9
Glyma.02G184700 Glycine max HOM05D004316 ORTHO05D005149 5.6e-102 375.6 467 49.9
CSS0028183 Camellia sinensis var. sinensis HOM05D004316 ORTHO05D005149 8.1e-101 371.7 387 56.8
FAN05G0825 Fragaria x ananassa HOM05D004316 ORTHO05D005149 2.0e-99 367.1 488 50.8
FvH4_6g23940 Fragaria vesca HOM05D004316 ORTHO05D005149 5.8e-99 365.5 490 49.4
Nn2g15213 Nelumbo nucifera HOM05D004316 ORTHO05D005149 5.8e-99 365.5 474 47.9
FAN09G3682 Fragaria x ananassa HOM05D004316 ORTHO05D005149 1.3e-98 364.4 488 48.4
RcHm_v2.0_Chr3g0482601 Rosa chinensis HOM05D004316 ORTHO05D005149 1.3e-98 364.4 488 49.2
FAN14G3684 Fragaria x ananassa HOM05D004316 ORTHO05D005149 1.7e-98 364.0 489 49.5
Manes.08G051300 Manihot esculenta HOM05D004316 ORTHO05D005149 1.7e-98 364.0 453 49.2
Oeu023579.1 Olea europaea HOM05D004316 ORTHO05D005149 1.7e-98 364.0 466 53.0
Sabra06G0035000 Salix brachista HOM05D004316 ORTHO05D005149 1.7e-98 364.0 286 66.8
Gohir.A11G312700 Gossypium hirsutum HOM05D004316 ORTHO05D005149 2.2e-98 363.6 435 48.3
Gorai.007G360600 Gossypium raimondii HOM05D004316 ORTHO05D005149 2.2e-98 363.6 442 48.2
Aa31LG10G12240 Aethionema arabicum HOM05D004316 ORTHO05D005149 2.9e-98 363.2 449 48.6
Gohir.D11G329400 Gossypium hirsutum HOM05D004316 ORTHO05D005149 3.7e-98 362.8 442 48.6
CsaV3_4G011650 Cucumis sativus L. HOM05D004316 ORTHO05D005149 4.9e-98 362.5 452 48.9
THA.LOC104802092 Tarenaya hassleriana HOM05D004316 ORTHO05D005149 6.4e-98 362.1 446 49.1
FAN02G3785 Fragaria x ananassa HOM05D004316 ORTHO05D005149 1.1e-97 361.3 489 48.1
Oeu033010.1 Olea europaea HOM05D004316 ORTHO05D005149 5.4e-97 359.0 438 50.5
TAR633G0189 Trochodendron aralioides HOM05D004316 ORTHO05D005149 9.2e-97 358.2 394 53.6
ClCG04G000170 Citrullus lanatus HOM05D004316 ORTHO05D005149 1.6e-96 357.5 383 55.1
Sed0026358 Sechium edule HOM05D004316 ORTHO05D005149 2.7e-96 356.7 394 53.0
Nn7g36300 Nelumbo nucifera HOM05D004316 ORTHO05D005149 3.5e-96 356.3 405 52.1
CANSAT80G0327 Cannabis sativa HOM05D004316 ORTHO05D005149 6.0e-96 355.5 479 48.9
Cc06_g17600 Coffea canephora HOM05D004316 ORTHO05D005149 1.7e-95 354.0 460 51.7
MELO3C023147.2 Cucumis melo HOM05D004316 ORTHO05D005149 3.9e-95 352.8 378 55.0
Thhalv10006507m.g Eutrema salsugineum HOM05D004316 ORTHO05D005149 3.9e-95 352.8 460 49.6
TAR623G0492 Trochodendron aralioides HOM05D004316 ORTHO05D005149 5.1e-95 352.4 380 54.5
Lju124C42T7 Lonicera japonica HOM05D004316 ORTHO05D005149 2.8e-93 346.7 383 54.0
arahy.Tifrunner.gnm1.ann1.7DG8CI Arachis hypogaea HOM05D004316 ORTHO05D005149 6.2e-93 345.5 449 47.0
arahy.Tifrunner.gnm1.ann1.WY7AF9 Arachis hypogaea HOM05D004316 ORTHO05D005149 6.2e-93 345.5 451 47.5
MD14G1072700 Malus domestica HOM05D004316 ORTHO05D005149 1.5e-91 340.9 377 54.6
MSTRG.19858 Avicennia marina HOM05D004316 ORTHO05D005149 9.9e-91 338.2 466 49.8
TWI53G1538 Tripterygium wilfordii HOM05D004316 ORTHO05D005149 2.9e-90 336.7 281 65.8
Sp5g05200 Schrenkiella parvula HOM05D004316 ORTHO05D005149 4.9e-90 335.9 379 50.7
THA.LOC104824440 Tarenaya hassleriana HOM05D004316 ORTHO05D005149 4.9e-90 335.9 451 47.5
AT3G57400 Arabidopsis thaliana HOM05D004316 ORTHO05D005149 1.1e-89 334.7 383 53.0
BcaB02g07608 Brassica carinata HOM05D004316 ORTHO05D005149 3.2e-89 333.2 458 46.5
DCAR_013604 Daucus carota HOM05D004316 ORTHO05D005149 2.7e-88 330.1 454 46.3
AL5G38930 Arabidopsis lyrata HOM05D004316 ORTHO05D005149 4.6e-88 329.3 455 47.0
CARHR167600 Cardamine hirsuta HOM05D004316 ORTHO05D005149 1.7e-87 327.4 445 47.4
BcaC08g44838 Brassica carinata HOM05D004316 ORTHO05D005149 2.3e-87 327.0 452 47.1
C06p24450 Brassica napus HOM05D004316 ORTHO05D005149 2.3e-87 327.0 452 47.1
BolC6t37592H Brassica oleracea HOM05D004316 ORTHO05D005149 2.3e-87 327.0 452 47.1
Lsat_1_v5_gn_9_29201 Lactuca sativa HOM05D004316 ORTHO05D005149 4.3e-86 322.8 475 44.8
Dinv39612 Davidia involucrata HOM05D004316 ORTHO05D005149 5.6e-86 322.4 321 58.6
Eucgr.A02343 Eucalyptus grandis HOM05D004316 ORTHO05D005149 2.8e-85 320.1 473 52.0
Lalb_Chr20g0110531 Lupinus albus HOM05D004316 ORTHO05D005149 4.7e-85 319.3 394 49.0
PSO384G0452 Papaver somniferum HOM05D004316 ORTHO05D005149 8.1e-85 318.5 383 49.3
Lalb_Chr25g0287141 Lupinus albus HOM05D004316 ORTHO05D005149 2.4e-84 317.0 392 48.0
PSO339G4967 Papaver somniferum HOM05D004316 ORTHO05D005149 2.4e-84 317.0 405 47.9
MSTRG.6426 Avicennia marina HOM05D004316 ORTHO05D005149 3.4e-83 313.2 466 44.4
Sopen04g007890 Solanum pennellii HOM05D004316 ORTHO05D005149 5.8e-83 312.4 382 49.2
SalBow6G3548 Salvia bowleyana HOM05D004316 ORTHO05D005149 7.6e-83 312.0 441 47.6
Carub.0005s2424 Capsella rubella HOM05D004316 ORTHO05D005149 9.9e-83 311.6 395 49.6
VMungo0720G0980 Vigna mungo HOM05D004316 ORTHO05D005149 1.3e-82 311.2 444 45.0
Peaxi162Scf00130g00012 Petunia axillaris HOM05D004316 ORTHO05D005149 1.7e-82 310.8 394 50.3
Lsat_1_v5_gn_8_81220 Lactuca sativa HOM05D004316 ORTHO05D005149 1.9e-81 307.4 396 48.7
Ah.13g076490 Amaranthus hybridus HOM05D004316 ORTHO05D005149 3.2e-81 306.6 396 47.7
Lsat_1_v5_gn_5_161320 Lactuca sativa HOM05D004316 ORTHO05D005149 3.2e-81 306.6 445 44.3
Lalb_Chr01g0017331 Lupinus albus HOM05D004316 ORTHO05D005149 3.2e-81 306.6 437 44.6
BcaC02g09937 Brassica carinata HOM05D004316 ORTHO05D005149 4.2e-81 306.2 379 48.5
C04p35000 Brassica napus HOM05D004316 ORTHO05D005149 4.2e-81 306.2 379 48.5
BolC4t25057H Brassica oleracea HOM05D004316 ORTHO05D005149 4.2e-81 306.2 379 48.5
HanXRQChr10g0296681 Helianthus annuus HOM05D004316 ORTHO05D005149 7.1e-81 305.4 461 44.5
BolC8t50893H Brassica oleracea HOM05D004316 ORTHO05D005149 2.7e-80 303.5 460 43.9
C08p32820 Brassica napus HOM05D004316 ORTHO05D005149 6.0e-80 302.4 460 43.5
PGSC0003DMG400027281 Solanum tuberosum HOM05D004316 ORTHO05D005149 6.0e-80 302.4 380 47.9
Migut.J01754 Erythranthe guttata HOM05D004316 ORTHO05D005149 5.1e-79 299.3 328 54.6
Glyma.03G136300 Glycine max HOM05D004316 ORTHO05D005149 4.3e-78 296.2 372 48.9
BcaC07g40393 Brassica carinata HOM05D004316 ORTHO05D005149 3.6e-77 293.1 382 49.0
AT5G52500 Arabidopsis thaliana HOM05D004316 ORTHO05D005149 1.8e-76 290.8 382 46.9
A09p50290 Brassica napus HOM05D004316 ORTHO05D005149 4.0e-76 289.7 441 44.7
BraA09t40480Z Brassica rapa HOM05D004316 ORTHO05D005149 4.0e-76 289.7 441 44.7
Lj1g0001621 Lotus japonicus HOM05D004316 ORTHO05D005149 5.3e-76 289.3 383 47.5
A04p03150 Brassica napus HOM05D004316 ORTHO05D005149 1.5e-75 287.7 350 47.4
Aqoxy1G00235 Aquilegia oxysepala HOM05D004316 ORTHO05D005149 4.5e-75 286.2 374 47.6
CAN.G676.33 Capsicum annuum HOM05D004316 ORTHO05D005149 7.6e-75 285.4 381 48.0
SGA_v2.0_scaffold5252G54614 Striga asiatica HOM05D004316 ORTHO05D005149 7.6e-75 285.4 291 54.0
A07p23380 Brassica napus HOM05D004316 ORTHO05D005149 9.9e-75 285.0 351 48.7
SGA_v2.0_scaffold105G30405 Striga asiatica HOM05D004316 ORTHO05D005149 3.8e-74 283.1 291 54.0
EL10Ac3g07095 Beta vulgaris HOM05D004316 ORTHO05D005149 4.9e-74 282.7 389 45.2
BcaB02g08317 Brassica carinata HOM05D004316 ORTHO05D005149 8.4e-74 282.0 324 49.7
SGA_v2.0_scaffold66G22353 Striga asiatica HOM05D004316 ORTHO05D005149 3.2e-73 280.0 292 53.8
Glyma.19G138200 Glycine max HOM05D004316 ORTHO05D005149 7.1e-73 278.9 369 45.8
Nitab4.5_0013624g0010 Nicotiana tabacum HOM05D004316 ORTHO05D005149 5.1e-71 272.7 284 53.9
Nitab4.5_0000586g0080 Nicotiana tabacum HOM05D004316 ORTHO05D005149 6.7e-71 272.3 284 53.2
Rhsim03G0025000 Rhododendron simsii HOM05D004316 ORTHO05D005149 6.7e-71 272.3 274 56.6
BraA07t30003Z Brassica rapa HOM05D004316 ORTHO05D005149 1.5e-70 271.2 296 51.7
Phvul.001G131600 Phaseolus vulgaris HOM05D004316 ORTHO05D005149 2.5e-70 270.4 288 53.1
Medtr7g091450 Medicago truncatula HOM05D004316 ORTHO05D005149 4.3e-70 269.6 286 52.8
HanXRQChr13g0395921 Helianthus annuus HOM05D004316 ORTHO05D005149 1.6e-69 267.7 396 44.7
VMungo1383G1866 Vigna mungo HOM05D004316 ORTHO05D005149 2.1e-69 267.3 288 53.1
PGSC0003DMG400008166 Solanum tuberosum HOM05D004316 ORTHO05D005149 4.0e-68 263.1 365 43.0
Nitab4.5_0000082g0160 Nicotiana tabacum HOM05D004316 ORTHO05D005149 9.0e-68 261.9 285 54.0
unitig_22.g6044 Utricularia gibba HOM05D004316 ORTHO05D005149 2.6e-67 260.4 438 41.1
Ca_08453_v3 Cicer arietinum L. HOM05D004316 ORTHO05D005149 3.4e-67 260.0 284 53.5
ECA248G0930 Erigeron canadensis HOM05D004316 ORTHO05D005149 9.9e-67 258.5 329 45.6
AUR62026044 Chenopodium quinoa HOM05D004316 ORTHO05D005149 1.1e-65 255.0 335 46.6
Sc19g0006560 Simmondsia chinensis HOM05D004316 ORTHO05D005149 1.9e-65 254.2 377 43.8
Solyc10g079390.1 Solanum lycopersicum HOM05D004316 ORTHO05D005149 1.9e-65 254.2 362 42.8
AUR62024455 Chenopodium quinoa HOM05D004316 ORTHO05D005149 5.1e-63 246.1 315 45.7
Psat3g072520 Pisum sativum HOM05D004316 ORTHO05D005149 3.3e-62 243.4 270 50.7
Solyc04g015850.3 Solanum lycopersicum HOM05D004316 ORTHO05D005149 2.8e-61 240.4 286 47.9
HanXRQChr05g0131861 Helianthus annuus HOM05D004316 ORTHO05D005149 1.2e-59 235.0 391 40.2
CDE08G1472 Ceratophyllum demersum HOM05D004316 ORTHO05D005149 3.4e-59 233.4 383 37.3
CDE09G0122 Ceratophyllum demersum HOM05D004316 ORTHO05D005149 1.3e-58 231.5 385 36.4
vmacro07846 Vaccinium macrocarpon HOM05D004316 ORTHO05D005149 1.0e-55 221.9 375 42.7
ECA247G0299 Erigeron canadensis HOM05D004316 ORTHO05D005149 1.5e-51 208.0 240 49.2
Actinidia39222 Actinidia chinensis HOM05D004316 ORTHO05D005149 2.2e-50 204.1 172 65.1
TPR.G3718 Trifolium pratense HOM05D004316 ORTHO05D005149 2.9e-50 203.8 264 47.0
SEGI_13236 Sequoiadendron giganteum HOM05D004316 ORTHO05D005149 2.7e-48 197.2 477 32.7
SEGI_35991 Sequoiadendron giganteum HOM05D004316 ORTHO05D005149 6.1e-48 196.1 442 33.9
unitig_8.g3507 Utricularia gibba HOM05D004316 ORTHO05D005149 3.9e-47 193.4 220 51.4
ATR0782G190 Amborella trichopoda HOM05D004316 ORTHO05D005149 1.4e-41 174.9 382 33.8
AL205U10010 Arabidopsis lyrata HOM05D004316 ORTHO05D005149 6.3e-37 159.5 178 52.8
AL8G26960 Arabidopsis lyrata HOM05D004316 ORTHO05D005149 8.2e-37 159.1 195 49.2
Mapoly0109s0039 Marchantia polymorpha HOM05D004316 ORTHO05D005149 7.0e-36 156.0 306 35.0
Pp3c20_13470 Physcomitrium patens HOM05D004316 ORTHO05D005149 1.2e-35 155.2 401 30.7
Pp3c13_6400 Physcomitrium patens HOM05D004316 ORTHO05D005149 2.6e-35 154.1 219 39.7
Pp3c3_2450 Physcomitrium patens HOM05D004316 ORTHO05D005149 5.9e-35 152.9 218 40.8
Pp3c5_24720 Physcomitrium patens HOM05D004316 ORTHO05D005149 7.7e-35 152.5 305 34.4
Pp3c23_16170 Physcomitrium patens HOM05D004316 ORTHO05D005149 1.4e-33 148.3 316 29.7
Pp3c8_14130 Physcomitrium patens HOM05D004316 ORTHO05D005149 2.1e-32 144.4 401 29.2
GSVIVG01033262001 Vitis vinifera HOM05D004316 ORTHO05D005149 4.4e-30 136.7 134 56.7
AagrBONN_evm.TU.Sc2ySwM_362.2535 Anthoceros agrestis HOM05D004316 ORTHO05D005149 1.7e-29 134.8 496 26.8
Actinidia39221 Actinidia chinensis HOM05D004316 ORTHO05D005149 3.7e-29 133.7 170 50.0
Mapoly0052s0060 Marchantia polymorpha HOM05D004316 ORTHO05D005149 7.7e-27 125.9 324 29.6
SMO201G0108 Selaginella moellendorffii HOM05D004316 ORTHO05D005149 2.2e-26 124.4 473 26.4
Pp3c6_3920 Physcomitrium patens HOM05D004316 ORTHO05D005149 3.2e-25 120.6 214 32.2
SEGI_40609 Sequoiadendron giganteum HOM05D004316 ORTHO05D005149 2.2e-18 97.8 89 55.1
SEGI_09580 Sequoiadendron giganteum HOM05D004316 ORTHO05D005149 4.2e-17 93.6 193 33.7
EL10Ac6g14633 Beta vulgaris HOM05D004316 ORTHO05D005149 7.2e-17 92.8 160 40.6
Nn1g05572 Nelumbo nucifera HOM05D004316 ORTHO05D022954 2.3e-15 87.8 88 48.9
BcaC02g09938 Brassica carinata HOM05D004316 ORTHO05D005149 1.6e-11 75.1 59 66.1
Solyc10g017860.1 Solanum lycopersicum HOM05D004316 ORTHO05D005149 1.4e-07 62.0 55 43.6


User provided reference genes

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