Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc33.191 Carica papaya HOM05D004369 ORTHO05D004907 2.6e-121 438.7 224 100.0
Haze_20292 Corylus avellana HOM05D004369 ORTHO05D004907 5.6e-63 245.0 233 60.5
Cfa019946 Carpinus fangiana HOM05D004369 ORTHO05D004907 1.6e-62 243.4 233 58.4
CiPaw.09G052400 Carya illinoinensis HOM05D004369 ORTHO05D004907 2.3e-61 239.6 233 59.2
Duzib106G1975 Durio zibethinus HOM05D004369 ORTHO05D004907 7.1e-58 228.0 232 59.9
Potri.016G029600 Populus trichocarpa HOM05D004369 ORTHO05D004907 2.1e-57 226.5 260 55.4
TWI74G0038 Tripterygium wilfordii HOM05D004369 ORTHO05D004907 6.0e-57 224.9 245 56.3
Thecc.05G119700 Theobroma cacao HOM05D004369 ORTHO05D004907 3.9e-56 222.2 247 54.3
Sabra16G0033500 Salix brachista HOM05D004369 ORTHO05D004907 2.5e-55 219.5 257 54.1
Potri.006G032300 Populus trichocarpa HOM05D004369 ORTHO05D004907 3.1e-53 212.6 265 52.5
TAR623G1559 Trochodendron aralioides HOM05D004369 ORTHO05D004907 3.1e-53 212.6 225 56.0
Dinv06038 Davidia involucrata HOM05D004369 ORTHO05D004907 4.0e-53 212.2 227 55.5
Sabra06G0021600 Salix brachista HOM05D004369 ORTHO05D004907 5.2e-53 211.8 261 53.3
Glyma.03G120700 Glycine max HOM05D004369 ORTHO05D004907 1.5e-52 210.3 238 55.5
TWI53G1196 Tripterygium wilfordii HOM05D004369 ORTHO05D004907 1.5e-52 210.3 241 53.1
Duzib128G0931 Durio zibethinus HOM05D004369 ORTHO05D004907 2.4e-50 203.0 232 56.0
Nn7g37071 Nelumbo nucifera HOM05D004369 ORTHO05D004907 3.2e-50 202.6 229 56.8
Psat0ss9348g0120 Pisum sativum HOM05D004369 ORTHO05D004907 5.4e-50 201.8 253 53.4
Phvul.001G116900 Phaseolus vulgaris HOM05D004369 ORTHO05D004907 1.2e-49 200.7 243 52.7
DCAR_013523 Daucus carota HOM05D004369 ORTHO05D004907 3.5e-49 199.1 225 52.4
Ca_08356_v3 Cicer arietinum L. HOM05D004369 ORTHO05D004907 4.6e-49 198.7 254 53.1
Prupe.6G310500 Prunus persica HOM05D004369 ORTHO05D004907 6.0e-49 198.4 259 54.1
VMungo1383G1978 Vigna mungo HOM05D004369 ORTHO05D004907 7.8e-49 198.0 244 52.9
Atru.chr1.1512 Acer truncatum HOM05D004369 ORTHO05D004907 1.3e-48 197.2 235 54.9
Glyma.19G125300 Glycine max HOM05D004369 ORTHO05D004907 1.7e-48 196.8 236 52.1
MBI13_g13129_MAGBIO Magnolia biondii HOM05D004369 ORTHO05D004907 1.7e-48 196.8 230 51.3
Ciclev10012618m.g Citrus clementina HOM05D004369 ORTHO05D004907 3.9e-48 195.7 253 49.4
MD04G1191900 Malus domestica HOM05D004369 ORTHO05D004907 3.9e-48 195.7 261 50.2
CSS0041918 Camellia sinensis var. sinensis HOM05D004369 ORTHO05D004907 1.1e-47 194.1 227 52.9
CiPaw.10G044100 Carya illinoinensis HOM05D004369 ORTHO05D004907 1.1e-47 194.1 215 52.1
QL07p014155 Quercus lobata HOM05D004369 ORTHO05D004907 5.6e-47 191.8 249 52.2
Manes.08G065900 Manihot esculenta HOM05D004369 ORTHO05D004907 9.6e-47 191.0 239 50.2
Medtr7g088620 Medicago truncatula HOM05D004369 ORTHO05D004907 4.8e-46 188.7 244 54.9
CiPaw.12G092400 Carya illinoinensis HOM05D004369 ORTHO05D004907 1.8e-45 186.8 169 62.7
ClCG10G016480 Citrullus lanatus HOM05D004369 ORTHO05D004907 3.1e-45 186.0 240 50.0
Cc00_g08990 Coffea canephora HOM05D004369 ORTHO05D004907 4.0e-45 185.7 239 52.3
Manes.09G001100 Manihot esculenta HOM05D004369 ORTHO05D004907 6.9e-45 184.9 238 52.1
FvH4_6g07790 Fragaria vesca HOM05D004369 ORTHO05D004907 2.0e-44 183.3 259 51.0
Phvul.002G069001 Phaseolus vulgaris HOM05D004369 ORTHO05D004907 3.4e-44 182.6 229 51.1
FAN14G1324 Fragaria x ananassa HOM05D002683 ORTHO05D007757 9.9e-44 181.0 259 50.2
Lj1g0025044 Lotus japonicus HOM05D004369 ORTHO05D004907 9.9e-44 181.0 241 51.5
PGR142G3989 Punica granatum HOM05D004369 ORTHO05D004907 2.9e-43 179.5 260 48.1
FAN09G2868 Fragaria x ananassa HOM05D004369 ORTHO05D004907 4.9e-43 178.7 254 50.4
RhsimUnG0020900 Rhododendron simsii HOM05D004369 ORTHO05D004907 6.4e-43 178.3 252 46.8
RcHm_v2.0_Chr3g0457501 Rosa chinensis HOM05D004369 ORTHO05D004907 2.4e-42 176.4 185 58.4
MELO3C009728.2 Cucumis melo HOM05D004369 ORTHO05D004907 3.2e-42 176.0 240 48.3
CsaV3_3G039860 Cucumis sativus L. HOM05D004369 ORTHO05D004907 7.1e-42 174.9 244 48.4
Eucgr.K01686 Eucalyptus grandis HOM05D004369 ORTHO05D004907 1.2e-41 174.1 284 43.3
FAN02G1899 Fragaria x ananassa HOM05D002683 ORTHO05D007757 7.9e-41 171.4 255 49.8
Lalb_Chr14g0365411 Lupinus albus HOM05D004369 ORTHO05D004907 3.0e-40 169.5 242 48.8
MSTRG.19768 Avicennia marina HOM05D004369 ORTHO05D004907 6.6e-40 168.3 233 45.5
Gorai.002G226300 Gossypium raimondii HOM05D004369 ORTHO05D004907 1.9e-39 166.8 230 50.0
Migut.J01607 Erythranthe guttata HOM05D004369 ORTHO05D004907 2.5e-39 166.4 235 45.1
Gorai.007G351100 Gossypium raimondii HOM05D004369 ORTHO05D004907 3.3e-39 166.0 223 48.9
SalBow6G6868 Salvia bowleyana HOM05D004369 ORTHO05D004907 3.3e-39 166.0 220 48.2
Gohir.D01G183200 Gossypium hirsutum HOM05D004369 ORTHO05D004907 4.3e-39 165.6 230 50.0
Lalb_Chr22g0357981 Lupinus albus HOM05D004369 ORTHO05D004907 4.3e-39 165.6 241 50.2
Gohir.A01G192900 Gossypium hirsutum HOM05D004369 ORTHO05D004907 5.6e-39 165.2 230 49.6
Gohir.D11G320900 Gossypium hirsutum HOM05D004369 ORTHO05D004907 5.6e-39 165.2 223 48.9
Nitab4.5_0000123g0220 Nicotiana tabacum HOM05D004369 ORTHO05D004907 5.6e-39 165.2 225 48.9
Gohir.A11G305500 Gossypium hirsutum HOM05D004369 ORTHO05D004907 1.3e-38 164.1 223 48.4
Sc19g0007900 Simmondsia chinensis HOM05D004369 ORTHO05D004907 2.8e-38 162.9 228 48.2
PGR042G0777 Punica granatum HOM05D004369 ORTHO05D004907 4.8e-38 162.2 230 50.0
Oeu060762.1 Olea europaea HOM05D004369 ORTHO05D004907 8.1e-38 161.4 236 45.8
Actinidia37863 Actinidia chinensis HOM05D004369 ORTHO05D004907 1.8e-37 160.2 228 47.8
A09p49750 Brassica napus HOM05D004369 ORTHO05D004907 4.0e-37 159.1 241 47.7
BraA09t40428Z Brassica rapa HOM05D004369 ORTHO05D004907 4.0e-37 159.1 241 47.7
PGSC0003DMG400007200 Solanum tuberosum HOM05D004369 ORTHO05D004907 4.0e-37 159.1 223 45.7
Nitab4.5_0001270g0170 Nicotiana tabacum HOM05D004369 ORTHO05D004907 5.3e-37 158.7 226 47.8
EL10Ac3g07333 Beta vulgaris HOM05D004369 ORTHO05D004907 1.7e-35 153.7 250 46.8
BolC8t50831H Brassica oleracea HOM05D004369 ORTHO05D004907 1.7e-35 153.7 238 45.0
Lsat_1_v5_gn_8_109221 Lactuca sativa HOM05D004369 ORTHO05D004907 1.7e-35 153.7 251 45.0
Nitab4.5_0000062g0280 Nicotiana tabacum HOM05D004369 ORTHO05D004907 2.2e-35 153.3 226 46.5
Oeu009515.1 Olea europaea HOM05D004369 ORTHO05D004907 2.2e-35 153.3 231 46.8
BcaC07g40000 Brassica carinata HOM05D004369 ORTHO05D004907 2.9e-35 152.9 238 45.0
C08p32120 Brassica napus HOM05D004369 ORTHO05D004907 2.9e-35 152.9 238 45.0
CANSAT80G1482 Cannabis sativa HOM05D004369 ORTHO05D004907 4.9e-35 152.1 231 48.9
MSTRG.26187 Avicennia marina HOM05D004369 ORTHO05D004907 1.1e-34 151.0 227 47.1
Solyc10g077130.1 Solanum lycopersicum HOM05D004369 ORTHO05D004907 1.9e-34 150.2 222 44.6
BcaC07g40111 Brassica carinata HOM05D004369 ORTHO05D004907 3.2e-34 149.4 235 45.1
MSTRG.6296 Avicennia marina HOM05D004369 ORTHO05D004907 4.2e-34 149.1 231 43.3
Ah.04g150390 Amaranthus hybridus HOM05D004369 ORTHO05D004907 7.1e-34 148.3 228 46.9
THA.LOC104824387 Tarenaya hassleriana HOM05D004369 ORTHO05D004907 7.1e-34 148.3 262 46.6
Aqoxy2G00033 Aquilegia oxysepala HOM05D004369 ORTHO05D004907 1.2e-33 147.5 260 41.2
BcaB02g08344 Brassica carinata HOM05D004369 ORTHO05D004907 2.7e-33 146.4 246 45.5
Peaxi162Scf00607g00054 Petunia axillaris HOM05D004369 ORTHO05D004907 2.7e-33 146.4 232 44.0
Oeu023004.1 Olea europaea HOM05D004369 ORTHO05D004907 3.5e-33 146.0 230 44.8
Sopen10g028810 Solanum pennellii HOM05D004369 ORTHO05D004907 3.5e-33 146.0 222 43.7
Thhalv10017173m.g Eutrema salsugineum HOM05D004369 ORTHO05D004907 6.0e-33 145.2 242 43.8
Ah.13g077330 Amaranthus hybridus HOM05D004369 ORTHO05D004907 1.0e-32 144.4 226 48.2
Oeu034749.1 Olea europaea HOM05D004369 ORTHO05D004907 1.8e-32 143.7 239 46.9
Oeu057811.1 Olea europaea HOM05D004369 ORTHO05D004907 3.0e-32 142.9 227 46.7
A04p31330 Brassica napus HOM05D004369 ORTHO05D004907 8.7e-32 141.4 236 41.9
AUR62018430 Chenopodium quinoa HOM05D004369 ORTHO05D004907 8.7e-32 141.4 247 44.5
Oeu034750.1 Olea europaea HOM05D004369 ORTHO05D004907 1.1e-31 141.0 239 45.2
Sp5g05710 Schrenkiella parvula HOM05D004369 ORTHO05D004907 1.1e-31 141.0 252 43.7
BcaC02g12874 Brassica carinata HOM05D004369 ORTHO05D004907 1.9e-31 140.2 239 42.7
Oeu044231.1 Olea europaea HOM05D004369 ORTHO05D004907 1.9e-31 140.2 224 44.2
A04p03590 Brassica napus HOM05D004369 ORTHO05D004907 3.3e-31 139.4 247 45.7
BraA04t16076Z Brassica rapa HOM05D004369 ORTHO05D004907 3.3e-31 139.4 247 45.7
C04p68730 Brassica napus HOM05D004369 ORTHO05D004907 4.3e-31 139.0 239 42.7
BolC4t28378H Brassica oleracea HOM05D004369 ORTHO05D004907 4.3e-31 139.0 239 42.7
CARHR167030 Cardamine hirsuta HOM05D004369 ORTHO05D004907 4.3e-31 139.0 259 43.2
AUR62021003 Chenopodium quinoa HOM05D004369 ORTHO05D004907 4.3e-31 139.0 249 42.6
Carub.0005s2361 Capsella rubella HOM05D004369 ORTHO05D004907 7.4e-31 138.3 258 40.3
THA.LOC104803243 Tarenaya hassleriana HOM05D004369 ORTHO05D004907 2.1e-30 136.7 249 42.6
THA.LOC104815333 Tarenaya hassleriana HOM05D004369 ORTHO05D004907 2.1e-30 136.7 246 43.9
BcaC02g09876 Brassica carinata HOM05D004369 ORTHO05D004907 2.8e-30 136.3 247 44.5
C04p35650 Brassica napus HOM05D004369 ORTHO05D004907 2.8e-30 136.3 247 44.5
BolC4t25239H Brassica oleracea HOM05D004369 ORTHO05D004907 2.8e-30 136.3 247 44.5
Thhalv10006505m.g Eutrema salsugineum HOM05D004369 ORTHO05D004907 3.7e-30 136.0 250 44.0
Gohir.A11G305600 Gossypium hirsutum HOM05D004369 ORTHO05D004907 4.8e-30 135.6 224 41.1
AL5G38270 Arabidopsis lyrata HOM05D004369 ORTHO05D004907 8.1e-30 134.8 252 40.1
Sp4g23330 Schrenkiella parvula HOM05D004369 ORTHO05D004907 1.1e-29 134.4 246 41.5
AT3G56880 Arabidopsis thaliana HOM05D004369 ORTHO05D004907 1.4e-29 134.0 250 40.8
BraA04t18590Z Brassica rapa HOM05D004369 ORTHO05D004907 2.4e-29 133.3 237 40.9
AT2G41010 Arabidopsis thaliana HOM05D004369 ORTHO05D004907 3.1e-29 132.9 242 40.1
Gohir.D11G321000 Gossypium hirsutum HOM05D004369 ORTHO05D004907 1.2e-28 131.0 223 39.5
Gorai.007G351200 Gossypium raimondii HOM05D004369 ORTHO05D004907 1.2e-28 131.0 223 40.4
TPR.G22743 Trifolium pratense HOM05D004369 ORTHO05D004907 1.5e-28 130.6 175 54.9
CARHR136130 Cardamine hirsuta HOM05D004369 ORTHO05D004907 2.0e-28 130.2 240 41.2
Aa31LG10G11730 Aethionema arabicum HOM05D004369 ORTHO05D004907 3.4e-28 129.4 263 41.8
HanXRQChr09g0258571 Helianthus annuus HOM05D004369 ORTHO05D004907 5.8e-28 128.6 225 47.6
PGSC0003DMG400028198 Solanum tuberosum HOM05D004369 ORTHO05D004907 2.2e-27 126.7 234 38.9
AL4G38990 Arabidopsis lyrata HOM05D004369 ORTHO05D004907 2.9e-27 126.3 241 40.7
Migut.K00167 Erythranthe guttata HOM05D004369 ORTHO05D004907 3.2e-26 122.9 234 43.2
SGA_v2.0_scaffold66G22309 Striga asiatica HOM05D004369 ORTHO05D004907 3.2e-26 122.9 244 41.0
HPP92_012446 Vanilla planifolia HOM05D004369 ORTHO05D004907 2.7e-25 119.8 193 40.9
Sed0018866 Sechium edule HOM05D004369 ORTHO05D004907 3.5e-25 119.4 227 42.3
Sopen10g031550 Solanum pennellii HOM05D004369 ORTHO05D004907 7.9e-25 118.2 244 38.5
Lalb_Chr24g0400611 Lupinus albus HOM05D004369 ORTHO05D004907 2.3e-24 116.7 180 45.6
PSO339G3328 Papaver somniferum HOM05D004369 ORTHO05D004907 3.9e-24 115.9 188 44.7
DCAR_020610 Daucus carota HOM05D004369 ORTHO05D004907 1.5e-23 114.0 161 47.8
CDE09G1065 Ceratophyllum demersum HOM05D004369 ORTHO05D004907 1.6e-22 110.5 212 41.5
PSO384G0208 Papaver somniferum HOM05D004369 ORTHO05D004907 1.6e-22 110.5 185 44.3
Sc25g0005580 Simmondsia chinensis HOM05D004369 ORTHO05D004907 1.6e-22 110.5 141 49.6
CAN.G959.22 Capsicum annuum HOM05D004369 ORTHO05D004907 4.8e-22 109.0 148 49.3
SalBow1G6186 Salvia bowleyana HOM05D004369 ORTHO05D004907 8.2e-22 108.2 240 37.1
MSTRG.10776 Avicennia marina HOM05D004369 ORTHO05D004907 1.1e-21 107.8 229 41.0
Carub.0004s2334 Capsella rubella HOM05D004369 ORTHO05D004907 1.1e-21 107.8 241 37.3
Peaxi162Scf00003g05315 Petunia axillaris HOM05D004369 ORTHO05D004907 1.1e-21 107.8 230 39.1
Eucgr.A02182 Eucalyptus grandis HOM05D004369 ORTHO05D004907 5.0e-19 99.0 238 37.0
SGA_v2.0_scaffold106G30551 Striga asiatica HOM05D004369 ORTHO05D004907 8.5e-19 98.2 224 37.9
HPP92_014347 Vanilla planifolia HOM05D004369 ORTHO05D004907 1.1e-18 97.8 177 41.2
HanXRQChr03g0086901 Helianthus annuus HOM05D004369 ORTHO05D004907 1.9e-18 97.1 235 39.1
ECA236G2438 Erigeron canadensis HOM05D004369 ORTHO05D004907 1.6e-17 94.0 239 36.8
SGA_v2.0_scaffold69G23192 Striga asiatica HOM05D004369 ORTHO05D004907 1.6e-17 94.0 247 35.6
ATR1096G063 Amborella trichopoda HOM05D004369 ORTHO05D004907 3.9e-16 89.4 241 34.4
unitig_21.g20674 Utricularia gibba HOM05D004369 ORTHO05D004907 6.7e-16 88.6 245 33.9
CDE02G4522 Ceratophyllum demersum HOM05D004369 ORTHO05D004907 3.7e-14 82.8 146 40.4
CDE04G0994 Ceratophyllum demersum HOM05D004369 ORTHO05D004907 1.8e-13 80.5 145 40.0
CDE08G1070 Ceratophyllum demersum HOM05D004369 ORTHO05D004907 5.3e-13 79.0 138 42.8
HPP92_028709 Vanilla planifolia HOM05D004369 ORTHO05D004907 5.3e-13 79.0 133 42.9
SEGI_18240 Sequoiadendron giganteum HOM05D004369 ORTHO05D004907 1.7e-11 73.9 204 33.3
Zm00001eb128970 Zea mays HOM05D004369 ORTHO05D004907 3.8e-11 72.8 174 36.2
SHI12275 Sapria himalayana HOM05D004369 ORTHO05D004907 1.4e-10 70.9 81 53.1
Os01g0278000 Oryza sativa ssp. japonica HOM05D004369 ORTHO05D004907 2.5e-10 70.1 80 51.2
CAN.G128.96 Capsicum annuum HOM05D004369 ORTHO05D004907 1.6e-09 67.4 108 49.1
Os11g0131100 Oryza sativa ssp. japonica HOM05D004369 ORTHO05D004907 6.1e-09 65.5 144 38.2
Os07g0686600 Oryza sativa ssp. japonica HOM05D015271 ORTHO05D020944 2.0e-07 60.5 100 43.0
Phvul.006G002700 Phaseolus vulgaris HOM05D001711 ORTHO05D002847 3.3e-07 59.7 139 33.1
Os12g0127800 Oryza sativa ssp. japonica HOM05D004369 ORTHO05D004907 6.3e-06 55.5 153 32.7
VMungo0540G2275 Vigna mungo HOM05D001711 ORTHO05D002847 6.3e-06 55.5 117 35.0
Nn1g03499 Nelumbo nucifera HOM05D004369 ORTHO05D004907 8.2e-06 55.1 87 43.7


User provided reference genes

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