Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc33.125 Carica papaya HOM05D005413 ORTHO05D006536 3.6e-100 368.2 184 100.0
TAR623G0045 Trochodendron aralioides HOM05D005413 ORTHO05D006536 1.4e-19 100.5 83 63.9
Potri.010G244600 Populus trichocarpa HOM05D005413 ORTHO05D006536 5.3e-19 98.6 95 57.9
CSS0023574 Camellia sinensis var. sinensis HOM05D005413 ORTHO05D006536 1.5e-18 97.1 83 60.2
PGSC0003DMG400002998 Solanum tuberosum HOM05D005413 ORTHO05D006536 1.5e-18 97.1 83 61.4
Lj2A950G18 Lonicera japonica HOM05D005413 ORTHO05D006536 4.5e-18 95.5 83 59.0
Nitab4.5_0000158g0110 Nicotiana tabacum HOM05D005413 ORTHO05D006536 4.5e-18 95.5 83 60.2
vmacro14313 Vaccinium macrocarpon HOM05D005413 ORTHO05D006536 7.7e-18 94.7 87 57.5
Dinv33562 Davidia involucrata HOM05D005413 ORTHO05D006536 1.0e-17 94.4 111 48.6
Dinv18856 Davidia involucrata HOM05D005413 ORTHO05D006536 1.3e-17 94.0 83 60.2
Dinv04422 Davidia involucrata HOM05D005413 ORTHO05D006536 1.7e-17 93.6 83 60.2
Nitab4.5_0008364g0010 Nicotiana tabacum HOM05D005413 ORTHO05D006536 2.2e-17 93.2 83 59.0
Sopen11g029620 Solanum pennellii HOM05D005413 ORTHO05D006536 5.0e-17 92.0 83 59.0
Solyc11g071950.3 Solanum lycopersicum HOM05D005413 ORTHO05D006536 8.5e-17 91.3 83 59.0
Nn2g14375 Nelumbo nucifera HOM05D005413 ORTHO05D006536 1.1e-16 90.9 88 56.8
QL04p048808 Quercus lobata HOM05D005413 ORTHO05D006536 1.9e-16 90.1 84 58.3
Ciclev10028962m.g Citrus clementina HOM05D005413 ORTHO05D006536 2.5e-16 89.7 83 54.2
Rhsim01G0199900 Rhododendron simsii HOM05D005413 ORTHO05D006536 3.2e-16 89.4 90 53.3
Rhsim01G0199600 Rhododendron simsii HOM05D005413 ORTHO05D006536 4.2e-16 89.0 124 44.4
CSS0050484 Camellia sinensis var. sinensis HOM05D005413 ORTHO05D006536 9.4e-16 87.8 83 56.6
Oeu029208.1 Olea europaea HOM05D005413 ORTHO05D006536 9.4e-16 87.8 91 53.8
GSVIVG01037530001 Vitis vinifera HOM05D005413 ORTHO05D006536 9.4e-16 87.8 96 51.0
MD03G1159500 Malus domestica HOM05D005413 ORTHO05D006536 1.2e-15 87.4 88 53.4
TAR633G2414 Trochodendron aralioides HOM05D005413 ORTHO05D006536 1.6e-15 87.0 95 52.6
Duzib168G1403 Durio zibethinus HOM05D005413 ORTHO05D006536 2.1e-15 86.7 83 55.4
Atru.chr3.3078 Acer truncatum HOM05D005413 ORTHO05D006536 2.7e-15 86.3 83 53.0
Atru.chr3.3087 Acer truncatum HOM05D005413 ORTHO05D006536 2.7e-15 86.3 83 53.0
Rhsim03G0094100 Rhododendron simsii HOM05D005413 ORTHO05D006536 3.6e-15 85.9 83 56.6
vmacro07276 Vaccinium macrocarpon HOM05D005413 ORTHO05D006536 3.6e-15 85.9 83 56.6
Hma1.2p1_0101F.1_g049660 Hydrangea macrophylla HOM05D005413 ORTHO05D006536 4.7e-15 85.5 97 49.5
Sabra10G0191100 Salix brachista HOM05D005413 ORTHO05D006536 4.7e-15 85.5 82 57.3
Cfa010502 Carpinus fangiana HOM05D005413 ORTHO05D006536 6.1e-15 85.1 93 52.7
Lj3g0006130 Lotus japonicus HOM05D005413 ORTHO05D006536 6.1e-15 85.1 83 54.2
MBI15_g31416_MAGBIO Magnolia biondii HOM05D005413 ORTHO05D006536 6.1e-15 85.1 98 50.0
Thecc.10G119400 Theobroma cacao HOM05D005413 ORTHO05D006536 6.1e-15 85.1 74 59.5
Actinidia11676 Actinidia chinensis HOM05D005413 ORTHO05D006536 7.9e-15 84.7 83 55.4
Haze_03431 Corylus avellana HOM05D005413 ORTHO05D006536 7.9e-15 84.7 93 52.7
DCAR_012252 Daucus carota HOM05D005413 ORTHO05D006536 7.9e-15 84.7 110 46.4
MD11G1174800 Malus domestica HOM05D005413 ORTHO05D006536 7.9e-15 84.7 88 50.0
Prupe.6G147200 Prunus persica HOM05D005413 ORTHO05D006536 1.0e-14 84.3 88 50.0
QL01p019216 Quercus lobata HOM05D005413 ORTHO05D006536 1.0e-14 84.3 82 54.9
Actinidia37056 Actinidia chinensis HOM05D005413 ORTHO05D006536 1.4e-14 84.0 83 54.2
MSTRG.12398 Avicennia marina HOM05D005413 ORTHO05D006536 1.4e-14 84.0 82 56.1
Haze_03425 Corylus avellana HOM05D005413 ORTHO05D006536 2.3e-14 83.2 81 54.3
Hund06812 Selenicereus undatus HOM05D005413 ORTHO05D006536 2.3e-14 83.2 80 53.8
Duzib170G0305 Durio zibethinus HOM05D005413 ORTHO05D006536 3.0e-14 82.8 82 52.4
CiPaw.14G092700 Carya illinoinensis HOM05D005413 ORTHO05D006536 3.9e-14 82.4 88 50.0
AUR62005613 Chenopodium quinoa HOM05D005413 ORTHO05D006536 5.1e-14 82.0 79 54.4
AUR62024117 Chenopodium quinoa HOM05D005413 ORTHO05D006536 5.1e-14 82.0 80 52.5
Peaxi162Scf00429g00512 Petunia axillaris HOM05D005413 ORTHO05D006536 5.1e-14 82.0 77 57.1
Cc01_g07840 Coffea canephora HOM05D005413 ORTHO05D006536 6.7e-14 81.6 83 53.0
FvH4_3g26150 Fragaria vesca HOM05D005413 ORTHO05D006536 8.8e-14 81.3 88 50.0
Potri.008G001700 Populus trichocarpa HOM05D005413 ORTHO05D006536 8.8e-14 81.3 86 53.5
Thecc.09G267600 Theobroma cacao HOM05D005413 ORTHO05D006536 8.8e-14 81.3 82 51.2
FAN11G2501 Fragaria x ananassa HOM05D005413 ORTHO05D006536 1.1e-13 80.9 77 53.2
HanXRQChr05g0137071 Helianthus annuus HOM05D005413 ORTHO05D006536 1.1e-13 80.9 89 50.6
Hma1.2p1_0098F.1_g048260 Hydrangea macrophylla HOM05D005413 ORTHO05D006536 1.1e-13 80.9 98 48.0
Migut.D02382 Erythranthe guttata HOM05D005413 ORTHO05D006536 1.5e-13 80.5 83 55.4
Oeu031446.2 Olea europaea HOM05D005413 ORTHO05D006536 1.5e-13 80.5 90 52.2
Sc09g0004800 Simmondsia chinensis HOM05D005413 ORTHO05D006536 1.5e-13 80.5 85 49.4
Aqoxy1G00612 Aquilegia oxysepala HOM05D005413 ORTHO05D006536 2.0e-13 80.1 87 50.6
ECA238G0598 Erigeron canadensis HOM05D005413 ORTHO05D006536 2.0e-13 80.1 92 46.7
RcHm_v2.0_Chr5g0049091 Rosa chinensis HOM05D005413 ORTHO05D006536 2.0e-13 80.1 83 51.8
Eucgr.J00585 Eucalyptus grandis HOM05D005413 ORTHO05D006536 2.6e-13 79.7 83 51.8
Sabra08G0009400 Salix brachista HOM05D005413 ORTHO05D006536 2.6e-13 79.7 97 48.5
Manes.11G103700 Manihot esculenta HOM05D005413 ORTHO05D006536 4.4e-13 79.0 87 49.4
Potri.008G015500 Populus trichocarpa HOM05D005413 ORTHO05D006536 4.4e-13 79.0 86 52.3
FAN16G0400 Fragaria x ananassa HOM05D005413 ORTHO05D006536 5.7e-13 78.6 83 50.6
FAN16G2334 Fragaria x ananassa HOM05D005413 ORTHO05D006536 5.7e-13 78.6 83 50.6
FAN25G1874 Fragaria x ananassa HOM05D005413 ORTHO05D006536 5.7e-13 78.6 77 51.9
Gohir.D05G079900 Gossypium hirsutum HOM05D005413 ORTHO05D006536 5.7e-13 78.6 83 51.8
Gorai.009G081500 Gossypium raimondii HOM05D005413 ORTHO05D006536 5.7e-13 78.6 83 51.8
Phvul.011G100200 Phaseolus vulgaris HOM05D005413 ORTHO05D006536 5.7e-13 78.6 80 51.2
COL.COLO4_00160 Corchorus olitorius HOM05D005413 ORTHO05D006536 7.4e-13 78.2 82 51.2
SGA_v2.0_scaffold22G09835 Striga asiatica HOM05D005413 ORTHO05D006536 7.4e-13 78.2 61 62.3
Ah.03g136210 Amaranthus hybridus HOM05D005413 ORTHO05D006536 1.7e-12 77.0 81 51.9
Gohir.A05G077100 Gossypium hirsutum HOM05D005413 ORTHO05D006536 1.7e-12 77.0 83 50.6
Oeu033267.1 Olea europaea HOM05D005413 ORTHO05D006536 1.7e-12 77.0 82 52.4
VMungo1127G2102 Vigna mungo HOM05D005413 ORTHO05D006536 4.8e-12 75.5 80 48.8
Ca_19483_v3 Cicer arietinum L. HOM05D005413 ORTHO05D006536 8.2e-12 74.7 99 41.4
Medtr4g050330 Medicago truncatula HOM05D005413 ORTHO05D006536 8.2e-12 74.7 99 40.4
SalBow6G6902 Salvia bowleyana HOM05D005413 ORTHO05D006536 1.4e-11 73.9 76 51.3
TPR.G4599 Trifolium pratense HOM05D005413 ORTHO05D006536 1.4e-11 73.9 99 41.4
EL10Ac6g13493 Beta vulgaris HOM05D005413 ORTHO05D006536 1.8e-11 73.6 80 50.0
Glyma.12G095900 Glycine max HOM05D005413 ORTHO05D006536 4.1e-11 72.4 80 48.8
TWI79G1192 Tripterygium wilfordii HOM05D005413 ORTHO05D006536 4.1e-11 72.4 83 48.2
MELO3C014525.2 Cucumis melo HOM05D005413 ORTHO05D006536 7.0e-11 71.6 83 48.2
CsaV3_6G038630 Cucumis sativus L. HOM05D005413 ORTHO05D006536 7.0e-11 71.6 83 48.2
ClCG02G022490 Citrullus lanatus HOM05D005413 ORTHO05D006536 9.1e-11 71.2 99 42.4
HPP92_015644 Vanilla planifolia HOM05D005413 ORTHO05D006536 9.1e-11 71.2 87 44.8
PSO339G2181 Papaver somniferum HOM05D005413 ORTHO05D006536 1.2e-10 70.9 84 47.6
unitig_899.g15382 Utricularia gibba HOM05D005413 ORTHO05D006536 1.2e-10 70.9 83 50.6
Medtr1g090350 Medicago truncatula HOM05D005413 ORTHO05D006536 2.0e-10 70.1 82 46.3
PGR119G0748 Punica granatum HOM05D005413 ORTHO05D006536 2.0e-10 70.1 84 50.0
THA.LOC104810942 Tarenaya hassleriana HOM05D001091 ORTHO05D001020 3.5e-10 69.3 81 48.1
Glyma.11G171773 Glycine max HOM05D005413 ORTHO05D006536 4.5e-10 68.9 80 46.2
Lalb_Chr03g0028501 Lupinus albus HOM05D005413 ORTHO05D006536 4.5e-10 68.9 83 47.0
CDE04G1023 Ceratophyllum demersum HOM05D005413 ORTHO05D006536 5.9e-10 68.6 72 54.2
Ca_10423_v3 Cicer arietinum L. HOM05D005413 ORTHO05D006536 7.7e-10 68.2 81 44.4
PSO384G0849 Papaver somniferum HOM05D005413 ORTHO05D006536 7.7e-10 68.2 84 46.4
ATR1120G017 Amborella trichopoda HOM05D005413 ORTHO05D006536 1.3e-09 67.4 83 43.4
DCAR_018207 Daucus carota HOM05D005413 ORTHO05D006536 1.3e-09 67.4 83 47.0
Lj5g0017620 Lotus japonicus HOM05D005413 ORTHO05D006536 1.3e-09 67.4 81 48.1
arahy.Tifrunner.gnm1.ann1.C0JSMI Arachis hypogaea HOM05D005413 ORTHO05D006536 1.7e-09 67.0 98 38.8
arahy.Tifrunner.gnm1.ann1.K4CWT5 Arachis hypogaea HOM05D005413 ORTHO05D006536 1.7e-09 67.0 98 38.8
TPR.G10267 Trifolium pratense HOM05D005413 ORTHO05D006536 1.7e-09 67.0 92 44.6
Dinv03807 Davidia involucrata HOM05D005413 ORTHO05D006536 2.2e-09 66.6 44 72.7
Lalb_Chr21g0312751 Lupinus albus HOM05D005413 ORTHO05D006536 3.8e-09 65.9 85 47.1
arahy.Tifrunner.gnm1.ann1.0IPW5R Arachis hypogaea HOM05D005413 ORTHO05D006536 5.0e-09 65.5 94 43.6
arahy.Tifrunner.gnm1.ann1.BD57S3 Arachis hypogaea HOM05D005413 ORTHO05D006536 6.5e-09 65.1 94 43.6
Lsat_1_v5_gn_2_106300 Lactuca sativa HOM05D005413 ORTHO05D006536 6.5e-09 65.1 93 39.8
Lalb_Chr19g0136161 Lupinus albus HOM05D005413 ORTHO05D006536 8.5e-09 64.7 83 48.2
AagrBONN_evm.TU.Sc2ySwM_344.2258 Anthoceros agrestis HOM05D004246 ORTHO05D005035 1.1e-08 64.3 72 50.0
Sp6g23150 Schrenkiella parvula HOM05D005413 ORTHO05D006536 1.1e-08 64.3 82 45.1
Phvul.007G136700 Phaseolus vulgaris HOM05D005413 ORTHO05D006536 3.2e-08 62.8 62 51.6
SEGI_29962 Sequoiadendron giganteum HOM05D005852 ORTHO05D000002 3.2e-08 62.8 83 42.2
Zm00001eb012330 Zea mays HOM05D005413 ORTHO05D006536 4.2e-08 62.4 88 42.0
CDE07G0886 Ceratophyllum demersum HOM05D005413 ORTHO05D006536 5.5e-08 62.0 67 49.3
AL6G33000 Arabidopsis lyrata HOM05D005413 ORTHO05D006536 9.4e-08 61.2 85 42.4
AT5G22040 Arabidopsis thaliana HOM05D005413 ORTHO05D006536 1.2e-07 60.8 85 42.4
Lj2C36T10 Lonicera japonica HOM05D005413 ORTHO05D006536 1.2e-07 60.8 94 38.3
SEGI_03865 Sequoiadendron giganteum HOM05D005413 ORTHO05D006536 1.2e-07 60.8 74 50.0
Carub.0006s1968 Capsella rubella HOM05D005413 ORTHO05D006536 2.1e-07 60.1 86 41.9
BcaC01g06609 Brassica carinata HOM05D005413 ORTHO05D006536 6.1e-07 58.5 81 42.0
C03p12140 Brassica napus HOM05D005413 ORTHO05D006536 6.1e-07 58.5 81 42.0
BolC3t13687H Brassica oleracea HOM05D005413 ORTHO05D006536 6.1e-07 58.5 81 42.0
BcaB01g04747 Brassica carinata HOM05D005413 ORTHO05D006536 1.0e-06 57.8 81 43.2
Thhalv10014324m.g Eutrema salsugineum HOM05D005413 ORTHO05D006536 1.0e-06 57.8 82 41.5
Os03g0274700 Oryza sativa ssp. japonica HOM05D005413 ORTHO05D006536 1.0e-06 57.8 88 40.9
Aa31LG1G13390 Aethionema arabicum HOM05D005413 ORTHO05D006536 2.3e-06 56.6 81 38.3
A03p10550 Brassica napus HOM05D005413 ORTHO05D006536 4.0e-06 55.8 81 40.7
BraA03t10367Z Brassica rapa HOM05D005413 ORTHO05D006536 4.0e-06 55.8 81 40.7
CARHR191490 Cardamine hirsuta HOM05D005413 ORTHO05D006536 4.0e-06 55.8 87 37.9
Psat7g200680 Pisum sativum HOM05D005413 ORTHO05D006536 5.2e-06 55.5 83 37.3


User provided reference genes

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