Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc3209.1 Carica papaya HOM05D004496 ORTHO05D005513 2.0e-157 559.3 342 100.0
Dinv13941 Davidia involucrata HOM05D004496 ORTHO05D005513 1.7e-66 257.3 322 59.0
Ciclev10015792m.g Citrus clementina HOM05D004496 ORTHO05D005513 3.7e-66 256.1 363 50.4
Duzib235G0420 Durio zibethinus HOM05D004496 ORTHO05D005513 3.7e-66 256.1 341 59.8
Hma1.2p1_0298F.1_g117440 Hydrangea macrophylla HOM05D004496 ORTHO05D005513 1.8e-65 253.8 369 57.7
Duzib192G0344 Durio zibethinus HOM05D004496 ORTHO05D005513 3.5e-64 249.6 331 55.9
CiPaw.09G098400 Carya illinoinensis HOM05D004496 ORTHO05D005513 1.3e-63 247.7 345 55.1
Thecc.06G228600 Theobroma cacao HOM05D004496 ORTHO05D005513 1.7e-63 247.3 358 54.5
Gohir.D05G176300 Gossypium hirsutum HOM05D004496 ORTHO05D005513 3.8e-63 246.1 342 55.3
Carub.0007s1912 Capsella rubella HOM05D004496 ORTHO05D005513 5.0e-63 245.7 352 56.8
Sabra11G0010200 Salix brachista HOM05D004496 ORTHO05D005513 8.5e-63 245.0 369 54.2
CiPaw.10G074800 Carya illinoinensis HOM05D004496 ORTHO05D005513 1.5e-62 244.2 334 57.8
Sp7g20330 Schrenkiella parvula HOM05D004496 ORTHO05D005513 1.5e-62 244.2 359 53.5
AL7G31460 Arabidopsis lyrata HOM05D004496 ORTHO05D005513 2.5e-62 243.4 351 58.4
Sabra11G0008600 Salix brachista HOM05D004496 ORTHO05D005513 4.2e-62 242.7 369 53.9
MSTRG.7183 Avicennia marina HOM05D004496 ORTHO05D005513 5.5e-62 242.3 361 49.9
TAR624G0763 Trochodendron aralioides HOM05D001218 ORTHO05D003142 7.2e-62 241.9 323 57.9
BraA01t01298Z Brassica rapa HOM05D004496 ORTHO05D005513 9.4e-62 241.5 360 51.7
THA.LOC104812981 Tarenaya hassleriana HOM05D004496 ORTHO05D005513 9.4e-62 241.5 368 53.5
Dinv20109 Davidia involucrata HOM05D004496 ORTHO05D005950 1.2e-61 241.1 318 54.1
Glyma.09G007852 Glycine max HOM05D004496 ORTHO05D005513 1.2e-61 241.1 318 60.4
Aa31LG6G4310 Aethionema arabicum HOM05D004496 ORTHO05D005513 1.6e-61 240.7 358 57.3
A01p13560 Brassica napus HOM05D004496 ORTHO05D005513 2.1e-61 240.4 360 51.7
CARHR229080 Cardamine hirsuta HOM05D004496 ORTHO05D005513 2.7e-61 240.0 354 57.3
MD10G1327300 Malus domestica HOM05D004496 ORTHO05D005513 2.7e-61 240.0 357 53.8
TWI38G0464 Tripterygium wilfordii HOM05D004496 ORTHO05D005513 4.7e-61 239.2 347 49.0
BcaC09g51153 Brassica carinata HOM05D004496 ORTHO05D005513 6.1e-61 238.8 357 52.7
C01p16430 Brassica napus HOM05D004496 ORTHO05D005513 6.1e-61 238.8 357 52.7
BolC1t01593H Brassica oleracea HOM05D004496 ORTHO05D005513 6.1e-61 238.8 357 52.7
Thhalv10025698m.g Eutrema salsugineum HOM05D004496 ORTHO05D005513 1.4e-60 237.7 350 53.1
Nitab4.5_0006125g0010 Nicotiana tabacum HOM05D004496 ORTHO05D005513 5.2e-60 235.7 361 47.1
A03p53360 Brassica napus HOM05D004496 ORTHO05D005513 1.2e-59 234.6 350 51.7
Glyma.15G112200 Glycine max HOM05D004496 ORTHO05D005513 1.5e-59 234.2 309 58.9
THA.LOC104806318 Tarenaya hassleriana HOM05D004496 ORTHO05D005513 2.2e-58 230.3 353 52.4
Gohir.A05G173300 Gossypium hirsutum HOM05D004496 ORTHO05D005513 4.8e-58 229.2 344 53.5
BcaNung03756 Brassica carinata HOM05D004496 ORTHO05D005513 8.3e-58 228.4 356 51.4
ClCG01G021640 Citrullus lanatus HOM05D004496 ORTHO05D005513 1.4e-57 227.6 349 53.9
Prupe.4G014700 Prunus persica HOM05D004496 ORTHO05D005513 1.4e-57 227.6 348 52.3
C07p51660 Brassica napus HOM05D004496 ORTHO05D005513 3.1e-57 226.5 351 49.9
Phvul.006G145400 Phaseolus vulgaris HOM05D004496 ORTHO05D005513 5.4e-57 225.7 337 54.0
BcaNung00807 Brassica carinata HOM05D004496 ORTHO05D005513 7.0e-57 225.3 351 52.7
Nn1g03388 Nelumbo nucifera HOM05D004496 ORTHO05D005513 9.1e-57 224.9 338 50.6
BcaNung01704 Brassica carinata HOM05D004496 ORTHO05D005513 1.2e-56 224.6 351 50.4
Sabra11G0011700 Salix brachista HOM05D004496 ORTHO05D005513 1.2e-56 224.6 369 52.0
Rhsim13G0149900 Rhododendron simsii HOM05D004496 ORTHO05D005513 2.0e-56 223.8 349 52.7
TAR627G0164 Trochodendron aralioides HOM05D004496 ORTHO05D005513 4.5e-56 222.6 337 52.2
Potri.011G015500 Populus trichocarpa HOM05D004496 ORTHO05D005513 1.3e-55 221.1 361 52.9
CAN.G1014.49 Capsicum annuum HOM05D004496 ORTHO05D005513 1.7e-55 220.7 336 49.7
Nn1g07279 Nelumbo nucifera HOM05D004496 ORTHO05D005513 1.7e-55 220.7 378 49.7
Cfa000158 Carpinus fangiana HOM05D004496 ORTHO05D005513 2.3e-55 220.3 352 54.3
Ca_00696_v3 Cicer arietinum L. HOM05D004496 ORTHO05D005513 2.9e-55 219.9 334 51.2
CANSAT56G2524 Cannabis sativa HOM05D004496 ORTHO05D005513 3.8e-55 219.5 384 52.9
Haze_06861 Corylus avellana HOM05D004496 ORTHO05D005513 3.8e-55 219.5 348 54.0
Psat1g175480 Pisum sativum HOM05D004496 ORTHO05D005513 3.8e-55 219.5 339 49.6
Lalb_Chr15g0087811 Lupinus albus HOM05D004496 ORTHO05D005513 5.0e-55 219.2 320 54.4
PGSC0003DMG400016725 Solanum tuberosum HOM05D004496 ORTHO05D005513 5.0e-55 219.2 359 46.2
TAR627G0966 Trochodendron aralioides HOM05D004496 ORTHO05D005513 6.6e-55 218.8 337 51.9
Actinidia26886 Actinidia chinensis HOM05D004496 ORTHO05D005513 8.6e-55 218.4 315 58.4
Medtr2g024980 Medicago truncatula HOM05D004496 ORTHO05D005513 1.9e-54 217.2 348 55.5
FAN25G1366 Fragaria x ananassa HOM05D004496 ORTHO05D005513 3.3e-54 216.5 335 48.4
Nitab4.5_0009517g0010 Nicotiana tabacum HOM05D004496 ORTHO05D005513 4.2e-54 216.1 373 44.2
Sopen02g025790 Solanum pennellii HOM05D004496 ORTHO05D005513 7.2e-54 215.3 373 44.2
Solyc02g081150.1 Solanum lycopersicum HOM05D004496 ORTHO05D005513 2.8e-53 213.4 362 45.3
Actinidia02342 Actinidia chinensis HOM05D004496 ORTHO05D005513 4.7e-53 212.6 311 55.3
Thhalv10028862m.g Eutrema salsugineum HOM05D004496 ORTHO05D005513 4.7e-53 212.6 315 46.3
Lj6g0013804 Lotus japonicus HOM05D004496 ORTHO05D005513 4.7e-53 212.6 293 57.0
FvH4_3g01370 Fragaria vesca HOM05D004496 ORTHO05D005513 1.4e-52 211.1 334 50.6
MD05G1352700 Malus domestica HOM05D004496 ORTHO05D005513 8.9e-52 208.4 353 53.0
Lalb_Chr18g0056781 Lupinus albus HOM05D004496 ORTHO05D005513 2.0e-51 207.2 310 52.9
Lj2P264T22 Lonicera japonica HOM05D004496 ORTHO05D005513 3.4e-51 206.5 341 46.0
PGR042G2934 Punica granatum HOM05D004496 ORTHO05D005513 4.4e-51 206.1 377 48.3
MSTRG.13128 Avicennia marina HOM05D004496 ORTHO05D005513 9.8e-51 204.9 356 43.0
Phvul.003G081900 Phaseolus vulgaris HOM05D004496 ORTHO05D005513 9.8e-51 204.9 320 45.3
vmacro03662 Vaccinium macrocarpon HOM05D004496 ORTHO05D005513 1.3e-50 204.5 357 46.5
CSS0046352 Camellia sinensis var. sinensis HOM05D004496 ORTHO05D005513 2.8e-50 203.4 327 52.9
THA.LOC104813445 Tarenaya hassleriana HOM05D004496 ORTHO05D005513 2.8e-50 203.4 324 56.8
RcHm_v2.0_Chr5g0001991 Rosa chinensis HOM05D004496 ORTHO05D005513 4.9e-50 202.6 335 53.7
TAR626G0621 Trochodendron aralioides HOM05D004496 ORTHO05D005513 8.3e-50 201.8 335 53.1
Migut.M01368 Erythranthe guttata HOM05D004496 ORTHO05D005513 1.1e-49 201.4 340 46.5
Gohir.D06G157600 Gossypium hirsutum HOM05D004496 ORTHO05D005513 1.1e-49 201.4 307 56.0
Gorai.010G184200 Gossypium raimondii HOM05D004496 ORTHO05D005513 1.8e-49 200.7 307 56.0
GSVIVG01004818001 Vitis vinifera HOM05D004496 ORTHO05D005513 1.2e-48 198.0 253 50.6
AT4G22190 Arabidopsis thaliana HOM05D004496 ORTHO05D005513 1.6e-48 197.6 351 53.6
TWI38G0680 Tripterygium wilfordii HOM05D004496 ORTHO05D005513 3.5e-48 196.4 366 47.5
arahy.Tifrunner.gnm1.ann1.SI7QTZ Arachis hypogaea HOM05D004496 ORTHO05D005513 5.9e-48 195.7 335 52.5
Manes.16G002700 Manihot esculenta HOM05D004496 ORTHO05D005513 5.9e-48 195.7 340 51.5
SalBow8G1688 Salvia bowleyana HOM05D004496 ORTHO05D005513 7.8e-48 195.3 330 44.5
QL05p071740 Quercus lobata HOM05D004496 ORTHO05D005513 1.7e-47 194.1 354 51.7
Lsat_1_v5_gn_4_61701 Lactuca sativa HOM05D004496 ORTHO05D005513 2.3e-47 193.7 345 54.2
VMungo1215G0904 Vigna mungo HOM05D004496 ORTHO05D005513 2.3e-47 193.7 321 46.4
Atru.chr10.2286 Acer truncatum HOM05D004496 ORTHO05D005513 5.0e-47 192.6 320 50.3
Gorai.009G181700 Gossypium raimondii HOM05D004496 ORTHO05D005513 1.9e-46 190.7 268 57.5
TWI63G1509 Tripterygium wilfordii HOM05D004496 ORTHO05D005513 1.9e-46 190.7 363 50.1
MBI19_g19808_MAGBIO Magnolia biondii HOM05D004496 ORTHO05D005513 2.5e-46 190.3 351 51.6
CsaV3_6G048690 Cucumis sativus L. HOM05D004496 ORTHO05D005513 9.5e-46 188.3 329 48.6
Peaxi162Scf00708g00013 Petunia axillaris HOM05D004496 ORTHO05D005513 1.2e-45 188.0 317 48.6
MELO3C007420.2 Cucumis melo HOM05D004496 ORTHO05D005513 6.1e-45 185.7 337 48.7
arahy.Tifrunner.gnm1.ann1.EH65IB Arachis hypogaea HOM05D004496 ORTHO05D005513 1.4e-44 184.5 337 52.2
BcaNung03755 Brassica carinata HOM05D004496 ORTHO05D005513 4.0e-44 183.0 252 55.6
Nitab4.5_0005882g0010 Nicotiana tabacum HOM05D004496 ORTHO05D005513 4.0e-44 183.0 341 42.5
Potri.004G003900 Populus trichocarpa HOM05D004496 ORTHO05D005513 5.2e-44 182.6 360 44.4
Aqoxy1G03511 Aquilegia oxysepala HOM05D004496 ORTHO05D005513 6.8e-44 182.2 371 46.1
Sabra04G0002100 Salix brachista HOM05D004496 ORTHO05D005513 6.8e-44 182.2 330 45.8
Nitab4.5_0000005g0040 Nicotiana tabacum HOM05D004496 ORTHO05D005513 2.0e-43 180.6 339 44.0
Sed0021394 Sechium edule HOM05D004496 ORTHO05D005513 4.4e-43 179.5 325 44.3
Potri.006G270100 Populus trichocarpa HOM05D004496 ORTHO05D005513 7.5e-43 178.7 307 48.5
Oeu007154.1 Olea europaea HOM05D004496 ORTHO05D005513 1.1e-41 174.9 295 46.4
Migut.H01591 Erythranthe guttata HOM05D004496 ORTHO05D005513 1.4e-41 174.5 349 43.0
Lsat_1_v5_gn_7_14880 Lactuca sativa HOM05D004496 ORTHO05D005513 1.9e-41 174.1 335 43.6
Sed0016463 Sechium edule HOM05D004496 ORTHO05D005513 4.1e-41 172.9 280 52.9
Sc17g0007590 Simmondsia chinensis HOM05D004496 ORTHO05D005513 2.0e-40 170.6 323 49.5
COL.COLO4_31834 Corchorus olitorius HOM05D004496 ORTHO05D005513 2.7e-40 170.2 166 61.4
CDE04G1983 Ceratophyllum demersum HOM05D004496 ORTHO05D005513 3.0e-39 166.8 326 39.6
HanXRQChr15g0470781 Helianthus annuus HOM05D004496 ORTHO05D005513 1.5e-38 164.5 319 51.4
Gohir.A06G151400 Gossypium hirsutum HOM05D004496 ORTHO05D005513 2.5e-38 163.7 226 58.4
Potri.006G282500 Populus trichocarpa HOM05D004496 ORTHO05D005513 2.5e-38 163.7 369 46.9
Glyma.07G263700 Glycine max HOM05D004496 ORTHO05D005513 3.3e-38 163.3 310 41.9
Manes.17G027100 Manihot esculenta HOM05D004496 ORTHO05D005513 5.6e-38 162.5 309 48.2
Sp6g04650 Schrenkiella parvula HOM05D004496 ORTHO05D005513 5.2e-36 156.0 338 46.2
EL10Ac8g20132 Beta vulgaris HOM05D004496 ORTHO05D005513 1.2e-35 154.8 305 43.3
Ah.09g234500 Amaranthus hybridus HOM05D004496 ORTHO05D005950 1.3e-34 151.4 316 50.6
Potri.006G282000 Populus trichocarpa HOM05D004496 ORTHO05D005513 1.7e-34 151.0 362 45.3
PSO210G3984 Papaver somniferum HOM05D004496 ORTHO05D005513 1.9e-33 147.5 406 38.2
Aa31LG9G9910 Aethionema arabicum HOM05D004496 ORTHO05D005950 4.1e-33 146.4 227 45.8
BraA03t14400Z Brassica rapa HOM05D004496 ORTHO05D005513 5.4e-33 146.0 165 52.7
PSO832G0430 Papaver somniferum HOM05D004496 ORTHO05D005513 7.0e-33 145.6 423 37.8
PGR004G2243 Punica granatum HOM05D004496 ORTHO05D005513 1.2e-32 144.8 341 39.3
Peaxi162Scf00294g00097 Petunia axillaris HOM05D004496 ORTHO05D005513 5.1e-31 139.4 268 44.8
Lj4g0028181 Lotus japonicus HOM05D004496 ORTHO05D005513 3.3e-30 136.7 327 45.9
HPP92_023384 Vanilla planifolia HOM05D004496 ORTHO05D005513 3.3e-30 136.7 335 37.9
Eucgr.D01366 Eucalyptus grandis HOM05D004496 ORTHO05D005513 3.1e-28 130.2 149 53.0
Oeu003154.1 Olea europaea HOM05D004496 ORTHO05D005513 1.7e-26 124.4 325 36.6
DCAR_002205 Daucus carota HOM05D004496 ORTHO05D005513 2.2e-26 124.0 355 33.8
Nn1g01506 Nelumbo nucifera HOM05D004496 ORTHO05D005513 2.9e-26 123.6 130 53.8
Potri.006G283300 Populus trichocarpa HOM05D004496 ORTHO05D005513 1.1e-25 121.7 315 45.7
Lj1P1236T60 Lonicera japonica HOM05D004496 ORTHO05D005513 1.9e-25 120.9 166 47.0
Nn2g15240 Nelumbo nucifera HOM05D004496 ORTHO05D005513 3.2e-25 120.2 263 44.5
ECA236G1118 Erigeron canadensis HOM05D004496 ORTHO05D005513 7.1e-25 119.0 317 37.9
CDE07G1551 Ceratophyllum demersum HOM05D004496 ORTHO05D005513 1.6e-24 117.9 281 36.7
Nn1g06547 Nelumbo nucifera HOM05D004496 ORTHO05D005513 7.8e-24 115.5 118 55.9
unitig_749.g13622 Utricularia gibba HOM05D004496 ORTHO05D005513 1.3e-23 114.8 280 41.4
ATR0059G030 Amborella trichopoda HOM05D004496 ORTHO05D005513 1.7e-23 114.4 372 38.2
Psat4g004280 Pisum sativum HOM05D004496 ORTHO05D005513 1.7e-23 114.4 236 44.1
Medtr4g132690 Medicago truncatula HOM05D004496 ORTHO05D005513 3.3e-22 110.2 338 36.4
SGA_v2.0_scaffold89G27486 Striga asiatica HOM05D004496 ORTHO05D005513 7.3e-22 109.0 366 38.8
Nn3g21624 Nelumbo nucifera HOM05D004496 ORTHO05D005513 5.2e-20 102.8 263 44.9
Zm00001eb169380 Zea mays HOM05D004496 ORTHO05D005513 1.2e-19 101.7 364 41.5
TPR.G37047 Trifolium pratense HOM05D004496 ORTHO05D005513 6.0e-16 89.4 193 41.5
Zm00001eb112850 Zea mays HOM05D004496 ORTHO05D005513 3.9e-15 86.7 349 34.7
unitig_26.g9398 Utricularia gibba HOM05D004496 ORTHO05D005513 6.6e-15 85.9 335 30.1
SGA_v2.0_scaffold4G01894 Striga asiatica HOM05D004496 ORTHO05D005513 8.7e-15 85.5 352 35.2
Ca_21060_v3 Cicer arietinum L. HOM05D004496 ORTHO05D005513 1.2e-13 81.6 207 36.7
HPP92_008063 Vanilla planifolia HOM05D004496 ORTHO05D005513 5.3e-12 76.3 151 39.1
Os11g0497350 Oryza sativa ssp. japonica HOM05D004496 ORTHO05D005513 3.3e-06 57.0 171 31.6
Nn2g15668 Nelumbo nucifera HOM05D004496 ORTHO05D005513 7.3e-06 55.8 93 43.0


User provided reference genes

Program Settings