Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc32.97 Carica papaya HOM05D003642 ORTHO05D004460 1.9e-220 768.8 379 100.0
COL.COLO4_19910 Corchorus olitorius HOM05D003642 ORTHO05D004460 2.4e-122 443.0 437 56.8
TWI31G0358 Tripterygium wilfordii HOM05D003642 ORTHO05D004460 4.5e-121 438.7 437 57.7
Thecc.09G285800 Theobroma cacao HOM05D003642 ORTHO05D004460 5.8e-121 438.3 440 55.7
Duzib170G0814 Durio zibethinus HOM05D003642 ORTHO05D004460 1.3e-120 437.2 442 56.3
Prupe.6G127500 Prunus persica HOM05D003642 ORTHO05D004460 3.5e-118 429.1 434 56.0
MD03G1142400 Malus domestica HOM05D003642 ORTHO05D004460 1.1e-116 424.1 434 54.8
Cfa010037 Carpinus fangiana HOM05D003642 ORTHO05D004460 3.3e-116 422.5 441 53.7
CiPaw.13G137400 Carya illinoinensis HOM05D003642 ORTHO05D004460 3.1e-114 416.0 432 54.2
Gohir.A05G081500 Gossypium hirsutum HOM05D003642 ORTHO05D004460 4.9e-112 408.7 438 53.0
Atru.chr3.3290 Acer truncatum HOM05D003642 ORTHO05D004460 3.2e-111 406.0 433 53.6
Ciclev10028611m.g Citrus clementina HOM05D003642 ORTHO05D004460 2.1e-110 403.3 395 57.5
Gohir.D05G084500 Gossypium hirsutum HOM05D003642 ORTHO05D004460 2.1e-110 403.3 423 53.7
Gohir.D07G113300 Gossypium hirsutum HOM05D003642 ORTHO05D004460 7.9e-110 401.4 401 56.4
MD11G1162900 Malus domestica HOM05D003642 ORTHO05D004460 1.0e-109 401.0 432 53.0
Potri.004G184200 Populus trichocarpa HOM05D003642 ORTHO05D004460 1.8e-109 400.2 392 56.1
Gorai.009G086400 Gossypium raimondii HOM05D003642 ORTHO05D004460 2.3e-109 399.8 433 53.1
Gorai.001G121600 Gossypium raimondii HOM05D003642 ORTHO05D004460 3.0e-109 399.4 401 56.1
FAN21G1092 Fragaria x ananassa HOM05D003642 ORTHO05D004460 3.3e-108 396.0 422 52.6
Manes.04G004900 Manihot esculenta HOM05D003642 ORTHO05D004460 4.3e-108 395.6 395 55.9
Manes.11G160800 Manihot esculenta HOM05D003642 ORTHO05D004460 5.7e-108 395.2 393 57.0
FAN25G1659 Fragaria x ananassa HOM05D003642 ORTHO05D004460 7.4e-108 394.8 422 52.6
RcHm_v2.0_Chr5g0044221 Rosa chinensis HOM05D003642 ORTHO05D004460 7.4e-108 394.8 422 52.6
FAN16G3636 Fragaria x ananassa HOM05D003642 ORTHO05D004460 1.2e-105 387.5 422 52.1
Sabra04G0123900 Salix brachista HOM05D003642 ORTHO05D004460 3.4e-105 386.0 392 54.6
Haze_23398 Corylus avellana HOM05D003642 ORTHO05D004460 1.3e-104 384.0 398 54.5
Nn2g14115 Nelumbo nucifera HOM05D003642 ORTHO05D004460 1.6e-102 377.1 407 53.1
Ca_19399_v3 Cicer arietinum L. HOM05D003642 ORTHO05D004460 3.9e-101 372.5 438 51.6
FvH4_3g24660 Fragaria vesca HOM05D003642 ORTHO05D004460 3.9e-101 372.5 412 52.2
Lj3g0020685 Lotus japonicus HOM05D003642 ORTHO05D004460 1.9e-100 370.2 436 49.1
MELO3C021417.2 Cucumis melo HOM05D003642 ORTHO05D004460 2.5e-100 369.8 392 51.5
Psat7g189000 Pisum sativum HOM05D003642 ORTHO05D004460 2.5e-100 369.8 432 51.2
Duzib150G1635 Durio zibethinus HOM05D003642 ORTHO05D004460 5.7e-100 368.6 348 57.2
Lalb_Chr03g0028031 Lupinus albus HOM05D003642 ORTHO05D004460 7.4e-100 368.2 437 47.4
TAR623G1689 Trochodendron aralioides HOM05D003642 ORTHO05D004460 1.7e-99 367.1 398 51.3
CsaV3_6G015050 Cucumis sativus L. HOM05D003642 ORTHO05D004460 2.2e-99 366.7 392 51.0
GSVIVG01036150001 Vitis vinifera HOM05D003642 ORTHO05D004460 2.8e-99 366.3 331 60.1
Medtr4g053520 Medicago truncatula HOM05D003642 ORTHO05D004460 3.7e-99 365.9 434 50.7
FAN11G1888 Fragaria x ananassa HOM05D003642 ORTHO05D004460 6.3e-99 365.2 365 55.9
Glyma.11G184200 Glycine max HOM05D003642 ORTHO05D004460 8.2e-99 364.8 445 49.0
Actinidia07238 Actinidia chinensis HOM05D003642 ORTHO05D004460 3.1e-98 362.8 393 52.9
Phvul.011G093000 Phaseolus vulgaris HOM05D003642 ORTHO05D004460 3.1e-98 362.8 433 49.0
VMungo1127G0822 Vigna mungo HOM05D003642 ORTHO05D004460 6.9e-98 361.7 428 49.5
Sed0019020 Sechium edule HOM05D003642 ORTHO05D004460 2.0e-97 360.1 394 50.0
CANSAT54G0701 Cannabis sativa HOM05D003642 ORTHO05D004460 3.4e-97 359.4 446 49.8
Glyma.12G088200 Glycine max HOM05D003642 ORTHO05D004460 8.5e-96 354.8 451 47.5
ClCG02G022190 Citrullus lanatus HOM05D003642 ORTHO05D004460 1.1e-95 354.4 391 50.6
Sc12g0004420 Simmondsia chinensis HOM05D003642 ORTHO05D004460 1.4e-95 354.0 434 46.3
Eucgr.B03872 Eucalyptus grandis HOM05D003642 ORTHO05D004460 1.2e-94 350.9 409 48.9
Hma1.2p1_0305F.1_g119710 Hydrangea macrophylla HOM05D003642 ORTHO05D004460 4.7e-94 349.0 444 47.5
Gorai.004G009500 Gossypium raimondii HOM05D003642 ORTHO05D004460 6.7e-93 345.1 395 50.6
QL01p012516 Quercus lobata HOM05D003642 ORTHO05D004460 1.5e-92 344.0 390 51.8
Hma1.2p1_0305F.1_g119720 Hydrangea macrophylla HOM05D003642 ORTHO05D004460 1.3e-91 340.9 398 50.0
Hma1.2p1_0578F.1_g182375 Hydrangea macrophylla HOM05D003642 ORTHO05D004460 1.3e-91 340.9 398 50.0
AUR62039222 Chenopodium quinoa HOM05D003642 ORTHO05D004460 2.2e-91 340.1 406 47.8
EL10Ac7g15808 Beta vulgaris HOM05D003642 ORTHO05D004460 2.8e-91 339.7 401 48.1
Dinv29465 Davidia involucrata HOM05D003642 ORTHO05D004460 3.7e-91 339.3 375 54.1
Gohir.A08G004800 Gossypium hirsutum HOM05D003642 ORTHO05D004460 3.7e-91 339.3 395 50.4
Ah.08g215830 Amaranthus hybridus HOM05D003642 ORTHO05D004460 1.1e-90 337.8 405 49.6
Sabra09G0111700 Salix brachista HOM05D003642 ORTHO05D004460 4.1e-90 335.9 392 49.2
Potri.009G144000 Populus trichocarpa HOM05D003642 ORTHO05D004460 5.3e-90 335.5 392 49.0
CSS0018533 Camellia sinensis var. sinensis HOM05D003642 ORTHO05D004460 1.5e-89 334.0 383 50.9
Sabra09G0114400 Salix brachista HOM05D003642 ORTHO05D004460 2.0e-89 333.6 392 49.0
Oeu002383.1 Olea europaea HOM05D003642 ORTHO05D004460 1.3e-88 330.9 389 49.4
Lj1A233T8 Lonicera japonica HOM05D003642 ORTHO05D004460 1.9e-87 327.0 396 48.7
CiPaw.14G101500 Carya illinoinensis HOM05D003642 ORTHO05D004460 2.5e-87 326.6 354 53.7
Migut.D02354 Erythranthe guttata HOM05D003642 ORTHO05D004460 3.2e-87 326.2 388 47.9
Actinidia24206 Actinidia chinensis HOM05D003642 ORTHO05D004460 4.2e-87 325.9 370 52.4
PGSC0003DMG400007143 Solanum tuberosum HOM05D003642 ORTHO05D004460 5.5e-87 325.5 390 47.9
Sopen06g030830 Solanum pennellii HOM05D003642 ORTHO05D004460 1.2e-86 324.3 390 48.5
Aqoxy2G01228 Aquilegia oxysepala HOM05D003642 ORTHO05D004460 4.7e-86 322.4 412 46.6
Cc01_g09370 Coffea canephora HOM05D003642 ORTHO05D004460 4.7e-86 322.4 391 47.8
Solyc06g074370.3 Solanum lycopersicum HOM05D003642 ORTHO05D004460 1.0e-85 321.2 390 48.2
PGR102G1012 Punica granatum HOM05D003642 ORTHO05D004460 1.8e-85 320.5 391 49.9
THA.LOC104800538 Tarenaya hassleriana HOM05D003642 ORTHO05D004460 6.7e-85 318.5 445 45.4
AUR62009777 Chenopodium quinoa HOM05D003642 ORTHO05D004460 7.4e-84 315.1 373 47.5
MBI17_g01557_MAGBIO Magnolia biondii HOM05D003642 ORTHO05D004460 1.3e-83 314.3 392 45.9
Rhsim13G0110400 Rhododendron simsii HOM05D003642 ORTHO05D004460 1.7e-83 313.9 392 49.5
SGA_v2.0_scaffold22G09875 Striga asiatica HOM05D003642 ORTHO05D004460 2.2e-83 313.5 389 46.5
Peaxi162Scf00091g00013 Petunia axillaris HOM05D003642 ORTHO05D004460 8.2e-83 311.6 395 46.6
Lj1A242T18 Lonicera japonica HOM05D003642 ORTHO05D004460 1.1e-82 311.2 308 56.2
vmacro03309 Vaccinium macrocarpon HOM05D003642 ORTHO05D004460 3.1e-82 309.7 395 48.4
Nitab4.5_0002002g0040 Nicotiana tabacum HOM05D003642 ORTHO05D004460 9.1e-82 308.1 373 48.8
Nitab4.5_0005324g0040 Nicotiana tabacum HOM05D003642 ORTHO05D004460 1.2e-81 307.8 373 48.8
CSS0027733 Camellia sinensis var. sinensis HOM05D003642 ORTHO05D004460 4.5e-81 305.8 391 47.3
CSS0037628 Camellia sinensis var. sinensis HOM05D003642 ORTHO05D004460 4.5e-81 305.8 391 47.3
HanXRQChr01g0024131 Helianthus annuus HOM05D003642 ORTHO05D004460 5.9e-81 305.4 393 47.3
CARHR008130 Cardamine hirsuta HOM05D003642 ORTHO05D004460 7.7e-81 305.1 396 46.2
Lj2C980T3 Lonicera japonica HOM05D003642 ORTHO05D004460 7.7e-81 305.1 338 51.8
THA.LOC104826418 Tarenaya hassleriana HOM05D003642 ORTHO05D004460 7.7e-81 305.1 398 46.5
PSO384G4986 Papaver somniferum HOM05D003642 ORTHO05D004460 1.3e-80 304.3 392 44.9
TPR.G17216 Trifolium pratense HOM05D003642 ORTHO05D004460 1.3e-80 304.3 435 45.5
CAN.G919.22 Capsicum annuum HOM05D003642 ORTHO05D004460 1.7e-80 303.9 391 46.3
MSTRG.18752 Avicennia marina HOM05D003642 ORTHO05D004460 3.2e-79 299.7 392 46.2
Eucgr.B03871 Eucalyptus grandis HOM05D003642 ORTHO05D004460 3.2e-79 299.7 381 46.7
Sp1g06910 Schrenkiella parvula HOM05D003642 ORTHO05D004460 5.5e-79 298.9 399 44.9
DCAR_012184 Daucus carota HOM05D003642 ORTHO05D004460 1.2e-78 297.7 386 45.9
AT1G08280 Arabidopsis thaliana HOM05D003642 ORTHO05D004460 1.6e-78 297.4 397 44.6
MBI01_g03598_MAGBIO Magnolia biondii HOM05D003642 ORTHO05D004460 2.1e-78 297.0 387 43.9
Thhalv10007826m.g Eutrema salsugineum HOM05D003642 ORTHO05D004460 3.6e-78 296.2 394 44.7
ATR0820G225 Amborella trichopoda HOM05D003642 ORTHO05D004460 6.1e-78 295.4 394 45.4
Gohir.A07G109500 Gossypium hirsutum HOM05D003642 ORTHO05D004460 8.0e-78 295.0 284 56.0
vmacro03308 Vaccinium macrocarpon HOM05D003642 ORTHO05D004460 5.2e-77 292.4 384 46.9
Rhsim13G0110200 Rhododendron simsii HOM05D003642 ORTHO05D004460 1.5e-76 290.8 396 46.0
AL1G18680 Arabidopsis lyrata HOM05D003642 ORTHO05D004460 2.6e-76 290.0 395 44.8
TAR369G0447 Trochodendron aralioides HOM05D003642 ORTHO05D004460 4.8e-75 285.8 388 45.6
vmacro03307 Vaccinium macrocarpon HOM05D003642 ORTHO05D004460 1.8e-74 283.9 384 44.5
Lsat_1_v5_gn_1_61681 Lactuca sativa HOM05D003642 ORTHO05D004460 9.1e-74 281.6 401 43.4
CDE02G0744 Ceratophyllum demersum HOM05D003642 ORTHO05D004460 7.7e-73 278.5 388 42.0
SGA_v2.0_scaffold147G36369 Striga asiatica HOM05D003642 ORTHO05D004460 2.2e-72 276.9 390 43.8
TWI75G1212 Tripterygium wilfordii HOM05D003642 ORTHO05D004460 1.1e-71 274.6 393 44.3
PSO210G3660 Papaver somniferum HOM05D003642 ORTHO05D004460 1.5e-71 274.2 389 43.7
CDE06G1048 Ceratophyllum demersum HOM05D003642 ORTHO05D004460 1.9e-71 273.9 353 44.2
HanXRQChr11g0346801 Helianthus annuus HOM05D003642 ORTHO05D004460 1.9e-71 273.9 396 43.4
unitig_0.g1479 Utricularia gibba HOM05D003642 ORTHO05D004460 3.2e-71 273.1 393 43.0
CDE08G0849 Ceratophyllum demersum HOM05D003642 ORTHO05D004460 4.7e-70 269.2 348 44.0
ECA248G0168 Erigeron canadensis HOM05D003642 ORTHO05D002466 5.2e-69 265.8 345 46.4
Lsat_1_v5_gn_6_40461 Lactuca sativa HOM05D003642 ORTHO05D004460 1.5e-68 264.2 391 43.0
Glyma.12G088100 Glycine max HOM05D003642 ORTHO05D004460 7.5e-68 261.9 394 42.1
A06p05300 Brassica napus HOM05D003642 ORTHO05D004460 3.7e-67 259.6 406 40.9
C05p06380 Brassica napus HOM05D003642 ORTHO05D004460 6.3e-67 258.8 403 40.7
BolC5t29393H Brassica oleracea HOM05D003642 ORTHO05D004460 6.3e-67 258.8 403 40.7
BraA06t23738Z Brassica rapa HOM05D003642 ORTHO05D004460 1.8e-66 257.3 404 41.3
BcaB07g34071 Brassica carinata HOM05D003642 ORTHO05D004460 5.4e-66 255.8 403 40.4
BcaB07g34070 Brassica carinata HOM05D003642 ORTHO05D004460 2.1e-62 243.8 351 41.6
Glyma.12G088000 Glycine max HOM05D003642 ORTHO05D004460 4.7e-62 242.7 395 39.2
ECA233G1545 Erigeron canadensis HOM05D003642 ORTHO05D004460 4.4e-60 236.1 399 39.1
HPP92_025134 Vanilla planifolia HOM05D003642 ORTHO05D004460 2.7e-57 226.9 378 41.5
HPP92_026090 Vanilla planifolia HOM05D003642 ORTHO05D004460 2.7e-57 226.9 378 41.5
SEGI_33073 Sequoiadendron giganteum HOM05D003642 ORTHO05D004460 4.5e-57 226.1 382 38.5
HanXRQChr12g0364601 Helianthus annuus HOM05D003642 ORTHO05D004460 1.1e-55 221.5 393 38.2
arahy.Tifrunner.gnm1.ann1.H74NZW Arachis hypogaea HOM05D003642 ORTHO05D004460 1.6e-54 217.6 398 39.4
AagrBONN_evm.TU.Sc2ySwM_228.2668 Anthoceros agrestis HOM05D003642 ORTHO05D004460 3.7e-51 206.5 426 34.3
Os01g0858900 Oryza sativa ssp. japonica HOM05D003642 ORTHO05D004460 1.1e-50 204.9 414 36.2
Zm00001eb147290 Zea mays HOM05D003642 ORTHO05D004460 4.1e-50 203.0 411 35.3
Mapoly0001s0264 Marchantia polymorpha HOM05D003642 ORTHO05D004460 5.4e-50 202.6 355 37.7
Carub.0001s0763 Capsella rubella HOM05D003642 ORTHO05D004460 1.6e-49 201.1 244 45.5
Zm00001eb366950 Zea mays HOM05D003642 ORTHO05D004460 1.6e-49 201.1 414 34.5
Mapoly0005s0249 Marchantia polymorpha HOM05D003642 ORTHO05D004460 5.0e-48 196.1 375 36.5
SMO145G0137 Selaginella moellendorffii HOM05D003642 ORTHO05D004460 6.6e-48 195.7 303 38.3
Gohir.D08G015066 Gossypium hirsutum HOM05D003642 ORTHO05D004460 1.2e-46 191.4 336 38.1
unitig_746.g26606 Utricularia gibba HOM05D003642 ORTHO05D004460 2.1e-46 190.7 395 34.7
SalBow6G1534 Salvia bowleyana HOM05D003642 ORTHO05D004460 2.8e-46 190.3 249 46.6
HPP92_006804 Vanilla planifolia HOM05D003642 ORTHO05D004460 2.8e-46 190.3 249 45.4
Nn6g34944 Nelumbo nucifera HOM05D003642 ORTHO05D004460 6.2e-46 189.1 226 47.8
SMO331G0026 Selaginella moellendorffii HOM05D003642 ORTHO05D004460 8.9e-45 185.3 292 38.7
TAR369G0401 Trochodendron aralioides HOM05D003642 ORTHO05D004460 9.8e-44 181.8 176 55.1
HPP92_011490 Vanilla planifolia HOM05D003642 ORTHO05D004460 8.3e-43 178.7 401 34.7
Zm00001eb426190 Zea mays HOM05D003642 ORTHO05D004460 1.4e-42 177.9 406 32.8
Os04g0506800 Oryza sativa ssp. japonica HOM05D003642 ORTHO05D004460 9.2e-42 175.3 412 34.0
unitig_899.g15371 Utricularia gibba HOM05D003642 ORTHO05D004460 2.1e-41 174.1 381 34.9
Zm00001eb077930 Zea mays HOM05D003642 ORTHO05D004460 7.8e-41 172.2 398 33.7
arahy.Tifrunner.gnm1.ann1.U1TIAA Arachis hypogaea HOM05D003642 ORTHO05D004460 1.6e-38 164.5 98 75.5
PSO339G5820 Papaver somniferum HOM05D003642 ORTHO05D004460 6.2e-38 162.5 98 74.5
arahy.Tifrunner.gnm1.ann1.SR1X9W Arachis hypogaea HOM05D003642 ORTHO05D004460 8.9e-37 158.7 98 73.5
TAR369G0931 Trochodendron aralioides HOM05D003642 ORTHO05D004460 8.3e-35 152.1 98 70.4
Pp3c14_26500 Physcomitrium patens HOM05D003642 ORTHO05D004460 1.9e-34 151.0 256 38.3
Os12g0151500 Oryza sativa ssp. japonica HOM05D003642 ORTHO05D004460 7.1e-34 149.1 238 39.1
Atru.chr3.3293 Acer truncatum HOM05D003642 ORTHO05D004460 1.6e-33 147.9 176 50.0
CDE06G0775 Ceratophyllum demersum HOM05D003642 ORTHO05D004460 1.6e-33 147.9 101 71.3
Zm00001eb196980 Zea mays HOM05D003642 ORTHO05D004460 1.5e-31 141.4 236 38.6
Mapoly0028s0144 Marchantia polymorpha HOM05D003642 ORTHO05D004460 3.3e-31 140.2 363 30.9
Zm00001eb092710 Zea mays HOM05D003642 ORTHO05D004460 3.6e-30 136.7 238 38.2
Mapoly0032s0065 Marchantia polymorpha HOM05D003642 ORTHO05D004460 2.2e-27 127.5 363 29.8
arahy.Tifrunner.gnm1.ann1.52W323 Arachis hypogaea HOM05D003642 ORTHO05D004460 4.9e-27 126.3 94 61.7
Gorai.004G170400 Gossypium raimondii HOM05D003642 ORTHO05D047870 1.4e-26 124.8 166 44.0
arahy.Tifrunner.gnm1.ann1.GDD8RQ Arachis hypogaea HOM05D003642 ORTHO05D004460 2.4e-26 124.0 98 58.2
Gohir.A08G142550 Gossypium hirsutum HOM05D003642 ORTHO05D004460 1.6e-25 121.3 166 44.0
Oeu053747.5 Olea europaea HOM05D003460 ORTHO05D004277 3.9e-24 116.7 170 43.5
Pp3c15_22480 Physcomitrium patens HOM05D003642 ORTHO05D004460 1.1e-18 98.6 111 44.1
Pp3c15_12330 Physcomitrium patens HOM05D003642 ORTHO05D004460 3.9e-16 90.1 143 35.0
unitig_899.g15372 Utricularia gibba HOM05D003642 ORTHO05D004460 2.5e-15 87.4 307 29.6
Psat5g158880 Pisum sativum HOM05D003642 ORTHO05D004460 3.6e-14 83.6 118 45.8
CDE08G1668 Ceratophyllum demersum HOM05D003642 ORTHO05D003759 1.2e-12 78.6 98 42.9
Gohir.D08G163550 Gossypium hirsutum HOM05D003642 ORTHO05D047870 1.2e-12 78.6 162 34.0
CBR_g16841 Chara braunii HOM05D003642 ORTHO05D004460 5.8e-12 76.3 274 28.5
Pp3c6_3550 Physcomitrium patens HOM05D003642 ORTHO05D004460 2.4e-10 70.9 69 50.7
Lalb_Chr19g0136571 Lupinus albus HOM05D003642 ORTHO05D004460 3.9e-08 63.5 38 71.1
CBR_g20295 Chara braunii HOM05D003642 ORTHO05D002554 8.7e-08 62.4 153 33.3
CBR_g46720 Chara braunii HOM05D000953 ORTHO05D000231 1.6e-06 58.2 182 28.6
CBR_g30491 Chara braunii HOM05D003642 ORTHO05D004460 2.8e-06 57.4 175 30.9
CBR_g49425 Chara braunii HOM05D000019 ORTHO05D000002 3.7e-06 57.0 44 56.8


User provided reference genes

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