Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc32.130 Carica papaya HOM05D005297 ORTHO05D006545 2.2e-88 328.9 166 100.0
QL02p014091 Quercus lobata HOM05D005297 ORTHO05D006545 1.4e-74 283.1 167 84.4
Thecc.09G287800 Theobroma cacao HOM05D005297 ORTHO05D006545 8.9e-74 280.4 168 83.9
GSVIVG01036187001 Vitis vinifera HOM05D005297 ORTHO05D006545 1.5e-73 279.6 168 81.0
Duzib150G0109 Durio zibethinus HOM05D005297 ORTHO05D006545 7.5e-73 277.3 168 82.1
Atru.chr3.3335 Acer truncatum HOM05D005297 ORTHO05D006545 9.8e-73 276.9 168 81.0
Gorai.001G120900 Gossypium raimondii HOM05D005297 ORTHO05D006545 1.7e-72 276.2 168 83.3
Sabra09G0113000 Salix brachista HOM05D005297 ORTHO05D006545 2.2e-72 275.8 172 81.4
Sabra09G0115400 Salix brachista HOM05D005297 ORTHO05D006545 2.2e-72 275.8 172 81.4
Eucgr.J00466 Eucalyptus grandis HOM05D005297 ORTHO05D006545 2.9e-72 275.4 168 80.4
Manes.11G159700 Manihot esculenta HOM05D005297 ORTHO05D006545 2.9e-72 275.4 172 79.1
Rhsim13G0108000 Rhododendron simsii HOM05D005297 ORTHO05D006545 2.9e-72 275.4 168 81.0
Manes.14G159600 Manihot esculenta HOM05D005297 ORTHO05D006545 4.9e-72 274.6 172 78.5
CSS0010276 Camellia sinensis var. sinensis HOM05D005297 ORTHO05D006545 1.1e-71 273.5 172 79.7
Gohir.D07G112500 Gossypium hirsutum HOM05D005297 ORTHO05D006545 1.1e-71 273.5 168 82.1
Nn2g14072 Nelumbo nucifera HOM05D005297 ORTHO05D006545 1.4e-71 273.1 168 79.8
CAN.G1177.8 Capsicum annuum HOM05D005297 ORTHO05D006545 1.9e-71 272.7 169 78.7
Gohir.A07G108700 Gossypium hirsutum HOM05D005297 ORTHO05D006545 1.9e-71 272.7 168 82.1
Gohir.A07G108780 Gossypium hirsutum HOM05D005297 ORTHO05D006545 1.9e-71 272.7 168 82.1
PGR119G1280 Punica granatum HOM05D005297 ORTHO05D006545 1.9e-71 272.7 170 81.2
Peaxi162Scf00544g00918 Petunia axillaris HOM05D005297 ORTHO05D006545 3.2e-71 271.9 169 79.9
Nitab4.5_0003532g0010 Nicotiana tabacum HOM05D005297 ORTHO05D006545 4.1e-71 271.6 169 79.9
Nitab4.5_0021448g0010 Nicotiana tabacum HOM05D005297 ORTHO05D006545 4.1e-71 271.6 169 79.9
CiPaw.13G138500 Carya illinoinensis HOM05D005297 ORTHO05D006545 5.4e-71 271.2 191 74.3
Potri.009G146100 Populus trichocarpa HOM05D005297 ORTHO05D006545 5.4e-71 271.2 172 79.7
CsaV3_4G024870 Cucumis sativus L. HOM05D005297 ORTHO05D006545 1.2e-70 270.0 167 81.4
Cc01_g09520 Coffea canephora HOM05D005297 ORTHO05D006545 1.6e-70 269.6 169 79.3
CAN.G644.6 Capsicum annuum HOM05D005297 ORTHO05D006545 2.1e-70 269.2 168 78.6
MELO3C003122.2 Cucumis melo HOM05D005297 ORTHO05D006545 2.7e-70 268.9 167 80.2
CANSAT64G2769 Cannabis sativa HOM05D005297 ORTHO05D006545 3.5e-70 268.5 169 79.9
Hund18738 Selenicereus undatus HOM05D005297 ORTHO05D006545 6.0e-70 267.7 170 78.8
Aqoxy4G02831 Aquilegia oxysepala HOM05D005297 ORTHO05D006545 1.0e-69 266.9 171 78.9
PGSC0003DMG400007409 Solanum tuberosum HOM05D005297 ORTHO05D006545 1.0e-69 266.9 169 78.1
Migut.N00940 Erythranthe guttata HOM05D005297 ORTHO05D006545 1.3e-69 266.5 169 77.5
Solyc11g067150.2 Solanum lycopersicum HOM05D005297 ORTHO05D006545 1.3e-69 266.5 168 78.0
Sopen11g026830 Solanum pennellii HOM05D005297 ORTHO05D006545 1.3e-69 266.5 168 78.0
THA.LOC104799541 Tarenaya hassleriana HOM05D005297 ORTHO05D006545 1.3e-69 266.5 171 77.8
MSTRG.18743 Avicennia marina HOM05D005297 ORTHO05D006545 1.7e-69 266.2 169 77.5
TAR623G0730 Trochodendron aralioides HOM05D005297 ORTHO05D006545 2.3e-69 265.8 169 81.1
Haze_23424 Corylus avellana HOM05D005297 ORTHO05D006545 3.0e-69 265.4 154 84.4
MBI17_g16878_MAGBIO Magnolia biondii HOM05D005297 ORTHO05D006545 5.1e-69 264.6 168 77.4
AUR62009792 Chenopodium quinoa HOM05D005297 ORTHO05D006545 1.1e-68 263.5 167 76.0
SalBow6G5239 Salvia bowleyana HOM05D005297 ORTHO05D006545 1.1e-68 263.5 170 77.1
SGA_v2.0_scaffold147G36360 Striga asiatica HOM05D005297 ORTHO05D006545 1.1e-68 263.5 172 75.0
ECA236G0310 Erigeron canadensis HOM05D005297 ORTHO05D006545 1.9e-68 262.7 172 75.0
Hma1.2p1_0305F.1_g119460 Hydrangea macrophylla HOM05D005297 ORTHO05D006545 1.9e-68 262.7 154 85.1
vmacro03296 Vaccinium macrocarpon HOM05D005297 ORTHO05D006545 1.9e-68 262.7 175 76.6
HanXRQChr13g0408991 Helianthus annuus HOM05D005297 ORTHO05D006545 3.3e-68 261.9 172 74.4
EL10Ac7g15793 Beta vulgaris HOM05D005297 ORTHO05D006545 4.3e-68 261.5 167 76.0
Aa31LG6G1540 Aethionema arabicum HOM05D005297 ORTHO05D006545 9.5e-68 260.4 171 77.2
Lsat_1_v5_gn_8_117180 Lactuca sativa HOM05D005297 ORTHO05D006545 9.5e-68 260.4 174 74.1
Lsat_1_v5_gn_8_90380 Lactuca sativa HOM05D005297 ORTHO05D006545 1.2e-67 260.0 173 73.4
unitig_736.g22397 Utricularia gibba HOM05D005297 ORTHO05D006545 1.2e-67 260.0 169 76.9
Carub.0006s3210 Capsella rubella HOM05D005297 ORTHO05D006545 1.6e-67 259.6 171 76.6
ATR0820G241 Amborella trichopoda HOM05D005297 ORTHO05D006545 2.1e-67 259.2 166 75.9
Prupe.6G124400 Prunus persica HOM05D005297 ORTHO05D006545 2.1e-67 259.2 153 83.0
TWI79G0927 Tripterygium wilfordii HOM05D005297 ORTHO05D006545 2.1e-67 259.2 168 75.0
Dinv29444 Davidia involucrata HOM05D005297 ORTHO05D006545 3.6e-67 258.5 154 83.1
Sp6g04610 Schrenkiella parvula HOM05D005297 ORTHO05D006545 4.7e-67 258.1 171 76.0
MD11G1160800 Malus domestica HOM05D005297 ORTHO05D006545 8.1e-67 257.3 153 82.4
Thhalv10029010m.g Eutrema salsugineum HOM05D005297 ORTHO05D006545 1.1e-66 256.9 172 76.2
CARHR253330 Cardamine hirsuta HOM05D005297 ORTHO05D006545 1.4e-66 256.5 176 73.9
RcHm_v2.0_Chr5g0054901 Rosa chinensis HOM05D005297 ORTHO05D006545 1.4e-66 256.5 151 82.1
TWI79G0105 Tripterygium wilfordii HOM05D005297 ORTHO05D006545 1.4e-66 256.5 168 74.4
BcaB01g01797 Brassica carinata HOM05D005297 ORTHO05D006545 1.8e-66 256.1 171 76.0
BcaC04g21280 Brassica carinata HOM05D005297 ORTHO05D006545 1.8e-66 256.1 171 76.0
RcHm_v2.0_Chr5g0054661 Rosa chinensis HOM05D005297 ORTHO05D006545 2.3e-66 255.8 153 80.4
Ciclev10029400m.g Citrus clementina HOM05D005297 ORTHO05D006545 4.0e-66 255.0 169 76.9
AT4G04190 Arabidopsis thaliana HOM05D005297 ORTHO05D006545 8.9e-66 253.8 177 72.9
PSO384G0067 Papaver somniferum HOM05D005297 ORTHO05D006545 2.6e-65 252.3 167 76.6
C09p33610 Brassica napus HOM05D002056 ORTHO05D002289 4.4e-65 251.5 168 76.2
BolC9t56195H Brassica oleracea HOM05D002056 ORTHO05D002289 4.4e-65 251.5 168 76.2
A09p26430 Brassica napus HOM05D005297 ORTHO05D006545 5.8e-65 251.1 168 76.2
BraA09t38217Z Brassica rapa HOM05D005297 ORTHO05D006545 5.8e-65 251.1 168 76.2
HPP92_006421 Vanilla planifolia HOM05D005297 ORTHO05D006545 7.5e-65 250.8 171 73.7
FAN21G1663 Fragaria x ananassa HOM05D005297 ORTHO05D006545 1.7e-64 249.6 151 80.8
Sc21g0007210 Simmondsia chinensis HOM05D005297 ORTHO05D006545 2.2e-64 249.2 157 80.3
AL6G47810 Arabidopsis lyrata HOM05D005297 ORTHO05D006545 2.9e-64 248.8 181 70.7
PSO425G0036 Papaver somniferum HOM05D005297 ORTHO05D006545 2.9e-64 248.8 167 76.0
Sc15g0007560 Simmondsia chinensis HOM05D005297 ORTHO05D006545 3.7e-64 248.4 166 74.7
FAN16G3468 Fragaria x ananassa HOM05D005297 ORTHO05D006545 4.9e-64 248.1 151 80.1
Medtr4g088775 Medicago truncatula HOM05D005297 ORTHO05D006545 4.9e-64 248.1 151 80.1
SEGI_17822 Sequoiadendron giganteum HOM05D005297 ORTHO05D006545 8.3e-64 247.3 170 72.4
FvH4_3g29610 Fragaria vesca HOM05D005297 ORTHO05D006545 1.1e-63 246.9 151 80.1
FAN11G1678 Fragaria x ananassa HOM05D005297 ORTHO05D006545 1.1e-63 246.9 151 80.1
Glyma.12G183000 Glycine max HOM05D005297 ORTHO05D006545 1.9e-63 246.1 152 78.9
Sp7g17550 Schrenkiella parvula HOM05D005297 ORTHO05D006545 1.9e-63 246.1 172 73.3
Sed0022012 Sechium edule HOM05D005297 ORTHO05D006545 1.9e-63 246.1 137 87.6
COL.COLO4_19936 Corchorus olitorius HOM05D005297 ORTHO05D006545 2.4e-63 245.7 137 87.6
Medtr0227s0030 Medicago truncatula HOM05D005297 ORTHO05D006545 2.4e-63 245.7 151 79.5
CSS0048581 Camellia sinensis var. sinensis HOM05D005297 ORTHO05D006545 3.2e-63 245.4 137 86.9
Phvul.005G125900 Phaseolus vulgaris HOM05D005297 ORTHO05D006545 4.1e-63 245.0 152 79.6
arahy.Tifrunner.gnm1.ann1.CT6H1M Arachis hypogaea HOM05D005297 ORTHO05D006545 5.4e-63 244.6 151 78.1
Glyma.13G318100 Glycine max HOM05D005297 ORTHO05D006545 7.1e-63 244.2 151 78.8
PSO801G0702 Papaver somniferum HOM05D005297 ORTHO05D006545 7.1e-63 244.2 167 74.9
Lj2g0006626 Lotus japonicus HOM05D005297 ORTHO05D006545 1.2e-62 243.4 150 78.7
Lalb_Chr24g0395231 Lupinus albus HOM05D005297 ORTHO05D006545 1.6e-62 243.0 150 78.0
Rhsim13G0108200 Rhododendron simsii HOM05D005297 ORTHO05D006545 2.1e-62 242.7 137 86.1
PSO170G0247 Papaver somniferum HOM05D005297 ORTHO05D006545 2.7e-62 242.3 164 75.0
Zm00001eb084080 Zea mays HOM05D005297 ORTHO05D006545 2.7e-62 242.3 172 69.8
PSO339G0592 Papaver somniferum HOM05D005297 ORTHO05D006545 7.8e-62 240.7 166 73.5
Psat2g130440 Pisum sativum HOM05D005297 ORTHO05D006545 1.0e-61 240.4 151 78.1
VMungo1080G0855 Vigna mungo HOM05D005392 ORTHO05D006709 3.9e-61 238.4 137 83.9
Os04g0410300 Oryza sativa ssp. japonica HOM05D005297 ORTHO05D006545 5.1e-61 238.0 172 69.8
Rhsim05G0032500 Rhododendron simsii HOM05D005297 ORTHO05D006545 5.1e-61 238.0 174 69.0
Nitab4.5_0024933g0010 Nicotiana tabacum HOM05D005297 ORTHO05D006545 4.3e-60 235.0 141 81.6
TAR369G0691 Trochodendron aralioides HOM05D005297 ORTHO05D006545 5.6e-60 234.6 137 84.7
arahy.Tifrunner.gnm1.ann1.K2P72U Arachis hypogaea HOM05D005780 ORTHO05D006545 1.2e-59 233.4 140 78.6
Ca_09074_v3 Cicer arietinum L. HOM05D005297 ORTHO05D006545 1.6e-59 233.0 136 82.4
PSO782G5408 Papaver somniferum HOM05D005297 ORTHO05D006545 1.6e-59 233.0 164 73.8
arahy.Tifrunner.gnm1.ann1.Q11QUE Arachis hypogaea HOM05D005297 ORTHO05D006545 2.1e-59 232.6 163 72.4
AUR62039239 Chenopodium quinoa HOM05D005297 ORTHO05D006545 8.1e-59 230.7 167 70.1
Thhalv10005498m.g Eutrema salsugineum HOM05D005297 ORTHO05D006545 1.2e-57 226.9 159 73.0
PSO339G2689 Papaver somniferum HOM05D005297 ORTHO05D006545 1.5e-57 226.5 150 76.0
Rhsim13G0107700 Rhododendron simsii HOM05D005297 ORTHO05D006545 3.2e-55 218.8 168 69.0
Os01g0191000 Oryza sativa ssp. japonica HOM05D005297 ORTHO05D006545 1.3e-53 213.4 160 66.9
Pp3c27_2700 Physcomitrium patens HOM05D005297 ORTHO05D006545 6.2e-51 204.5 166 56.6
Medtr4g073910 Medicago truncatula HOM05D005297 ORTHO05D006545 4.0e-50 201.8 130 77.7
Actinidia24196 Actinidia chinensis HOM05D005392 ORTHO05D006709 5.3e-50 201.4 161 63.4
Lj2A987T34 Lonicera japonica HOM05D005297 ORTHO05D006545 1.3e-48 196.8 109 89.0
CSS0004713 Camellia sinensis var. sinensis HOM05D005297 ORTHO05D006545 3.8e-48 195.3 149 68.5
Mapoly0068s0054 Marchantia polymorpha HOM05D005297 ORTHO05D006545 3.3e-44 182.2 153 56.2
arahy.Tifrunner.gnm1.ann1.S3X3J8 Arachis hypogaea HOM05D005297 ORTHO05D006545 5.6e-44 181.4 151 62.9
CDE11G0319 Ceratophyllum demersum HOM05D005297 ORTHO05D006545 5.6e-44 181.4 109 80.7
MD03G1139300 Malus domestica HOM05D005297 ORTHO05D006545 9.6e-44 180.6 143 67.1
Duzib168G0206 Durio zibethinus HOM05D005297 ORTHO05D006545 1.3e-43 180.3 109 83.5
PSO782G3247 Papaver somniferum HOM05D005297 ORTHO05D006545 7.6e-41 171.0 126 72.2
TPR.G2691 Trifolium pratense HOM05D005297 ORTHO05D006545 2.7e-38 162.5 113 72.6
CBR_g82609 Chara braunii HOM05D005297 ORTHO05D006545 1.3e-37 160.2 151 52.3
Ca_05140_v3 Cicer arietinum L. HOM05D005297 ORTHO05D012218 2.8e-35 152.5 100 74.0
SHI11151 Sapria himalayana HOM05D005297 ORTHO05D000023 2.9e-32 142.5 103 67.0
DCAR_001100 Daucus carota HOM05D005297 ORTHO05D006545 6.5e-32 141.4 126 60.3
Gorai.003G076100 Gossypium raimondii HOM05D005297 ORTHO05D006545 1.6e-30 136.7 121 58.7
Gorai.006G055300 Gossypium raimondii HOM05D005297 ORTHO05D006545 1.6e-30 136.7 69 91.3
Gorai.003G055900 Gossypium raimondii HOM05D005297 ORTHO05D006545 1.1e-28 130.6 111 62.2
Gorai.005G178100 Gossypium raimondii HOM05D005297 ORTHO05D006545 9.6e-28 127.5 69 85.5
Oeu050204.1 Olea europaea HOM05D005297 ORTHO05D006545 2.8e-27 125.9 185 44.3
arahy.Tifrunner.gnm1.ann1.LDL4WN Arachis hypogaea HOM05D005297 ORTHO05D006545 3.7e-27 125.6 85 71.8
Gohir.D06G133032 Gossypium hirsutum HOM05D005297 ORTHO05D006545 2.4e-26 122.9 63 88.9
CSS0043339 Camellia sinensis var. sinensis HOM05D005297 ORTHO05D006545 3.4e-25 119.0 152 46.7
Gohir.D09G053026 Gossypium hirsutum HOM05D005297 ORTHO05D006545 3.4e-25 119.0 69 82.6
QL02p014117 Quercus lobata HOM05D005297 ORTHO05D006545 5.5e-23 111.7 64 87.5
Oeu046141.1 Olea europaea HOM05D005297 ORTHO05D006545 1.3e-21 107.1 82 67.1
RcHm_v2.0_Chr5g0054771 Rosa chinensis HOM05D005297 ORTHO05D006545 1.1e-18 97.4 112 52.7
Gohir.D02G158550 Gossypium hirsutum HOM05D005297 ORTHO05D006545 1.4e-18 97.1 69 72.5
C02p40370 Brassica napus HOM05D000848 ORTHO05D000007 1.0e-16 90.9 66 66.7
BolC2t10071H Brassica oleracea HOM05D005297 ORTHO05D000007 4.6e-14 82.0 58 69.0
TPR.G32973 Trifolium pratense HOM05D005297 ORTHO05D006545 1.8e-13 80.1 44 81.8
Psat2g121320 Pisum sativum HOM05D005297 ORTHO05D006545 6.7e-13 78.2 58 60.3
Gohir.D03G086101 Gossypium hirsutum HOM05D003628 ORTHO05D004253 4.7e-06 55.5 99 36.4


User provided reference genes

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