Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc32.101 Carica papaya HOM05D005294 ORTHO05D006720 2.6e-264 914.8 461 100.0
Haze_25869 Corylus avellana HOM05D005294 ORTHO05D006720 2.3e-188 662.5 460 71.3
CiPaw.03G219800 Carya illinoinensis HOM05D005294 ORTHO05D006720 1.6e-184 649.8 461 69.2
QL02p063470 Quercus lobata HOM05D005294 ORTHO05D006720 4.5e-184 648.3 460 68.3
COL.COLO4_18242 Corchorus olitorius HOM05D005294 ORTHO05D006720 4.2e-182 641.7 459 69.5
Potri.013G068200 Populus trichocarpa HOM05D005294 ORTHO05D006720 4.2e-182 641.7 460 70.2
Ciclev10008203m.g Citrus clementina HOM05D005294 ORTHO05D006720 9.4e-182 640.6 465 68.2
Manes.16G105100 Manihot esculenta HOM05D005294 ORTHO05D006720 1.2e-181 640.2 460 69.1
Atru.chr7.1522 Acer truncatum HOM05D005294 ORTHO05D006720 2.3e-180 636.0 460 68.9
Cfa003134 Carpinus fangiana HOM05D005294 ORTHO05D006720 8.8e-180 634.0 460 69.3
Thecc.09G094300 Theobroma cacao HOM05D005294 ORTHO05D006720 8.8e-180 634.0 445 69.9
TWI34G0876 Tripterygium wilfordii HOM05D005294 ORTHO05D006720 3.7e-178 628.6 463 68.5
Duzib168G2227 Durio zibethinus HOM05D005294 ORTHO05D006720 1.8e-177 626.3 444 68.9
MD15G1202500 Malus domestica HOM05D005294 ORTHO05D006720 5.3e-177 624.8 465 66.7
MD02G1072700 Malus domestica HOM05D005294 ORTHO05D006720 7.0e-177 624.4 465 67.1
Gohir.D06G069100 Gossypium hirsutum HOM05D005294 ORTHO05D006720 1.7e-175 619.8 459 67.3
Gorai.010G080700 Gossypium raimondii HOM05D005294 ORTHO05D006720 1.7e-175 619.8 459 67.3
TWI63G0491 Tripterygium wilfordii HOM05D005294 ORTHO05D006720 1.7e-175 619.8 460 67.2
Prupe.7G214700 Prunus persica HOM05D005294 ORTHO05D006720 1.1e-174 617.1 462 67.7
Gohir.A06G070500 Gossypium hirsutum HOM05D005294 ORTHO05D006720 3.2e-174 615.5 459 67.1
Sabra13G0059500 Salix brachista HOM05D005294 ORTHO05D006720 5.5e-174 614.8 512 63.1
Dinv36732 Davidia involucrata HOM05D005294 ORTHO05D006720 3.0e-172 609.0 453 67.5
GSVIVG01015248001 Vitis vinifera HOM05D005294 ORTHO05D006720 2.6e-171 605.9 451 66.1
CSS0007070 Camellia sinensis var. sinensis HOM05D005294 ORTHO05D006720 1.4e-169 600.1 453 64.7
CSS0004577 Camellia sinensis var. sinensis HOM05D005294 ORTHO05D006720 3.1e-169 599.0 453 64.5
RcHm_v2.0_Chr2g0092581 Rosa chinensis HOM05D005294 ORTHO05D006720 4.1e-169 598.6 465 63.2
LjContig00141g0021499 Lotus japonicus HOM05D005294 ORTHO05D006720 9.1e-169 597.4 460 64.3
Actinidia39748 Actinidia chinensis HOM05D005294 ORTHO05D006720 7.7e-168 594.3 460 64.8
THA.LOC104811733 Tarenaya hassleriana HOM05D005294 ORTHO05D006720 1.3e-167 593.6 462 64.9
CANSAT64G1758 Cannabis sativa HOM05D005294 ORTHO05D006720 2.2e-167 592.8 466 64.8
Glyma.14G065800 Glycine max HOM05D005294 ORTHO05D006720 1.1e-166 590.5 460 65.4
AL8G32570 Arabidopsis lyrata HOM05D005294 ORTHO05D006720 1.2e-165 587.0 465 63.2
Lalb_Chr18g0053011 Lupinus albus HOM05D005294 ORTHO05D006720 3.6e-165 585.5 459 63.6
BcaC01g06444 Brassica carinata HOM05D005294 ORTHO05D006720 6.1e-165 584.7 462 63.0
arahy.Tifrunner.gnm1.ann1.T94LMP Arachis hypogaea HOM05D005294 ORTHO05D006720 1.4e-164 583.6 466 62.0
Lj7C671G8 Lonicera japonica HOM05D005294 ORTHO05D006720 1.8e-164 583.2 454 63.4
Rhsim05G0031400 Rhododendron simsii HOM05D005294 ORTHO05D006720 2.3e-164 582.8 462 64.5
AT5G56740 Arabidopsis thaliana HOM05D005294 ORTHO05D006720 3.0e-164 582.4 465 63.0
arahy.Tifrunner.gnm1.ann1.CWN4E9 Arachis hypogaea HOM05D005294 ORTHO05D006720 3.0e-164 582.4 466 61.8
BraA10t43499Z Brassica rapa HOM05D005294 ORTHO05D006720 3.0e-164 582.4 459 64.7
CARHR270490 Cardamine hirsuta HOM05D005294 ORTHO05D006720 5.2e-164 581.6 467 63.0
FvH4_1g06810 Fragaria vesca HOM05D005294 ORTHO05D006720 5.2e-164 581.6 465 62.4
Eucgr.C03688 Eucalyptus grandis HOM05D005294 ORTHO05D006720 6.8e-164 581.3 462 62.3
Lalb_Chr15g0084501 Lupinus albus HOM05D005294 ORTHO05D006720 6.8e-164 581.3 466 63.3
A03p13220 Brassica napus HOM05D005294 ORTHO05D006720 2.0e-163 579.7 463 63.1
A10p14080 Brassica napus HOM05D005294 ORTHO05D006720 4.4e-163 578.6 459 64.5
C03p15490 Brassica napus HOM05D005294 ORTHO05D006720 4.4e-163 578.6 463 62.9
BolC3t13987H Brassica oleracea HOM05D005294 ORTHO05D006720 1.7e-162 576.6 463 62.6
BraA03t10634Z Brassica rapa HOM05D005294 ORTHO05D006720 2.2e-162 576.2 463 62.6
Glyma.02G250900 Glycine max HOM05D005294 ORTHO05D006720 2.2e-162 576.2 460 63.9
BcaB01g04417 Brassica carinata HOM05D005294 ORTHO05D006720 3.7e-162 575.5 468 61.8
FAN26G2354 Fragaria x ananassa HOM05D005294 ORTHO05D006720 3.7e-162 575.5 456 63.2
BcaB08g36064 Brassica carinata HOM05D005294 ORTHO05D006720 4.9e-162 575.1 463 62.6
Carub.0008s1722 Capsella rubella HOM05D005294 ORTHO05D006720 1.4e-161 573.5 461 61.8
Thhalv10013465m.g Eutrema salsugineum HOM05D005294 ORTHO05D006720 4.1e-161 572.0 461 62.3
PGR102G3363 Punica granatum HOM05D005294 ORTHO05D006720 5.4e-161 571.6 460 58.9
Nitab4.5_0004011g0060 Nicotiana tabacum HOM05D005294 ORTHO05D006720 1.6e-160 570.1 453 63.4
FAN23G1873 Fragaria x ananassa HOM05D005294 ORTHO05D006720 2.0e-160 569.7 465 61.7
vmacro10822 Vaccinium macrocarpon HOM05D005294 ORTHO05D006720 2.0e-160 569.7 498 60.0
Phvul.008G230500 Phaseolus vulgaris HOM05D005294 ORTHO05D006720 3.5e-160 568.9 461 63.8
Sc08g0008210 Simmondsia chinensis HOM05D005294 ORTHO05D006720 7.7e-160 567.8 447 61.1
Sp6g18490 Schrenkiella parvula HOM05D005294 ORTHO05D006720 3.8e-159 565.5 465 61.3
Medtr5g080780 Medicago truncatula HOM05D005294 ORTHO05D006720 1.5e-158 563.5 461 62.5
Nitab4.5_0001492g0020 Nicotiana tabacum HOM05D005294 ORTHO05D006720 1.5e-158 563.5 451 62.7
TAR624G1381 Trochodendron aralioides HOM05D005294 ORTHO05D006720 8.9e-156 554.3 452 60.8
ClCG11G001870 Citrullus lanatus HOM05D005294 ORTHO05D006720 5.7e-155 551.6 466 59.9
TPR.G25848 Trifolium pratense HOM05D005294 ORTHO05D006720 5.7e-155 551.6 462 61.7
DCAR_012006 Daucus carota HOM05D005294 ORTHO05D006720 3.7e-154 548.9 460 58.9
Solyc02g068580.1 Solanum lycopersicum HOM05D005294 ORTHO05D006720 4.9e-154 548.5 458 59.2
CsaV3_2G001600 Cucumis sativus L. HOM05D005294 ORTHO05D006720 4.1e-153 545.4 467 60.0
Sopen02g017740 Solanum pennellii HOM05D005294 ORTHO05D006720 4.1e-153 545.4 458 58.7
VMungo0647G0234 Vigna mungo HOM05D005294 ORTHO05D006720 7.0e-153 544.7 461 62.5
MSTRG.19532 Avicennia marina HOM05D005294 ORTHO05D006720 1.6e-152 543.5 457 60.4
PGSC0003DMG400033362 Solanum tuberosum HOM05D005294 ORTHO05D006720 2.0e-152 543.1 463 57.9
Psat2g038680 Pisum sativum HOM05D005294 ORTHO05D006720 5.9e-152 541.6 462 60.2
FAN19G0312 Fragaria x ananassa HOM05D005294 ORTHO05D006720 1.7e-151 540.0 436 61.5
FAN26G0700 Fragaria x ananassa HOM05D005294 ORTHO05D006720 3.9e-151 538.9 436 61.5
CAN.G142.7 Capsicum annuum HOM05D005294 ORTHO05D006720 6.6e-151 538.1 460 58.0
Aqoxy7G03926 Aquilegia oxysepala HOM05D005294 ORTHO05D006720 1.6e-149 533.5 461 59.4
Sed0020374 Sechium edule HOM05D005294 ORTHO05D006720 4.0e-148 528.9 465 57.2
Hund05510 Selenicereus undatus HOM05D005294 ORTHO05D006720 5.2e-148 528.5 465 57.6
Peaxi162Scf01468g00004 Petunia axillaris HOM05D005294 ORTHO05D006720 1.7e-146 523.5 461 58.4
PSO210G3043 Papaver somniferum HOM05D005294 ORTHO05D006720 1.5e-142 510.4 458 56.1
Migut.J00438 Erythranthe guttata HOM05D005294 ORTHO05D006720 6.2e-141 505.0 458 55.9
Cc06_g10960 Coffea canephora HOM05D005294 ORTHO05D006720 8.1e-141 504.6 442 57.9
Lsat_1_v5_gn_5_146040 Lactuca sativa HOM05D005294 ORTHO05D006720 1.1e-140 504.2 453 53.0
Aa31LG3G12690 Aethionema arabicum HOM05D005294 ORTHO05D006720 1.3e-138 497.3 464 55.6
HanXRQChr12g0355321 Helianthus annuus HOM05D005294 ORTHO05D006720 8.3e-138 494.6 455 53.6
ECA234G1346 Erigeron canadensis HOM05D005294 ORTHO05D006720 1.9e-137 493.4 465 54.2
PSO210G1233 Papaver somniferum HOM05D005294 ORTHO05D006720 2.4e-137 493.0 458 54.8
Ah.15g091540 Amaranthus hybridus HOM05D005294 ORTHO05D006720 5.1e-135 485.3 464 54.1
BcaC04g20057 Brassica carinata HOM05D005294 ORTHO05D006720 1.1e-134 484.2 447 57.3
Haze_25870 Corylus avellana HOM05D005294 ORTHO05D006720 1.4e-132 477.2 423 58.9
SGA_v2.0_scaffold62G21576 Striga asiatica HOM05D005294 ORTHO05D006720 1.3e-130 470.7 493 51.1
EL10Ac7g17721 Beta vulgaris HOM05D005294 ORTHO05D006720 1.1e-129 467.6 425 57.4
Ca_05904_v3 Cicer arietinum L. HOM05D005294 ORTHO05D006720 2.4e-129 466.5 424 56.4
AUR62008827 Chenopodium quinoa HOM05D005294 ORTHO05D006720 3.2e-129 466.1 466 52.8
AUR62025414 Chenopodium quinoa HOM05D005294 ORTHO05D006720 4.6e-128 462.2 466 52.1
MBI04_g06995_MAGBIO Magnolia biondii HOM05D005294 ORTHO05D006720 1.7e-127 460.3 462 51.5
Aqoxy4G01946 Aquilegia oxysepala HOM05D005294 ORTHO05D006720 6.2e-125 451.8 436 53.7
HPP92_009085 Vanilla planifolia HOM05D005294 ORTHO05D006720 5.2e-124 448.7 456 50.2
unitig_26.g9161 Utricularia gibba HOM05D005294 ORTHO05D006720 3.0e-119 433.0 494 47.6
Os09g0347800 Oryza sativa ssp. japonica HOM05D005294 ORTHO05D006720 2.5e-118 429.9 462 48.1
Zm00001eb310550 Zea mays HOM05D005294 ORTHO05D006720 1.3e-111 407.5 468 47.0
BolC9t57681H Brassica oleracea HOM05D005294 ORTHO05D006720 6.4e-106 388.7 377 55.7
C09p48310 Brassica napus HOM05D005294 ORTHO05D006720 1.4e-105 387.5 369 56.4
ATR0705G179 Amborella trichopoda HOM05D005294 ORTHO05D006720 1.9e-97 360.5 423 42.8
Nn6g35397 Nelumbo nucifera HOM05D005294 ORTHO05D006720 2.7e-96 356.7 286 59.8
MELO3C004615.2 Cucumis melo HOM05D005294 ORTHO05D006720 6.1e-88 328.9 285 57.9
SHI02790 Sapria himalayana HOM05D005294 ORTHO05D006720 1.0e-87 328.2 362 50.0
CDE09G1011 Ceratophyllum demersum HOM05D005294 ORTHO05D006720 2.6e-83 313.5 440 39.1
SGA_v2.0_scaffold10G05199 Striga asiatica HOM05D005294 ORTHO05D006720 2.6e-83 313.5 522 37.4
SEGI_34717 Sequoiadendron giganteum HOM05D005294 ORTHO05D006720 5.9e-83 312.4 493 38.3
Oeu052126.1 Olea europaea HOM05D005294 ORTHO05D006720 1.5e-70 271.2 322 48.1
Pp3c15_19200 Physcomitrium patens HOM05D005294 ORTHO05D006720 1.8e-63 247.7 474 32.1
Mapoly0079s0005 Marchantia polymorpha HOM05D005294 ORTHO05D006720 5.7e-62 242.7 505 32.7
Actinidia25279 Actinidia chinensis HOM05D005294 ORTHO05D006720 7.2e-49 199.1 354 37.6
MBI14_g43979_MAGBIO Magnolia biondii HOM05D005294 ORTHO05D006720 4.7e-48 196.4 226 48.2
CBR_g45363 Chara braunii HOM05D005294 ORTHO05D006720 3.1e-44 183.7 391 30.9
Zm00001eb171070 Zea mays HOM05D005294 ORTHO05D006720 2.1e-40 171.0 161 51.6
Zm00001eb301910 Zea mays HOM05D005294 ORTHO05D006720 8.0e-40 169.1 161 50.9
Aa31LG3G12580 Aethionema arabicum HOM05D005294 ORTHO05D006720 1.5e-38 164.9 124 63.7
Aa31LG3G12620 Aethionema arabicum HOM05D005294 ORTHO05D006720 1.5e-38 164.9 124 63.7
RcHm_v2.0_Chr2g0093931 Rosa chinensis HOM05D005294 ORTHO05D006720 9.8e-38 162.2 128 60.2
Aa31sc2040G10 Aethionema arabicum HOM05D005294 ORTHO05D006720 2.9e-37 160.6 121 63.6
PRCOL_00004982 Prasinoderma coloniale HOM05D005294 ORTHO05D006720 3.2e-36 157.1 393 28.8
CARHR271620 Cardamine hirsuta HOM05D005294 ORTHO05D006720 3.5e-35 153.7 105 65.7
Aqoxy4G01950 Aquilegia oxysepala HOM05D002435 ORTHO05D002550 2.5e-33 147.5 217 43.8
RcHm_v2.0_Chr2g0093921 Rosa chinensis HOM05D005294 ORTHO05D006720 4.3e-33 146.7 115 63.5
Aa31LG3G12670 Aethionema arabicum HOM05D004235 ORTHO05D005157 2.8e-32 144.1 228 37.7
Cre03.g186500 Chlamydomonas reinhardtii HOM05D005294 ORTHO05D006720 3.0e-26 124.0 305 27.5
MCO15G657 Micromonas commoda HOM05D005294 ORTHO05D006720 7.3e-25 119.4 349 24.9
SMO281G0026 Selaginella moellendorffii HOM05D005294 ORTHO05D006720 5.6e-17 93.2 116 40.5
SMO244G0078 Selaginella moellendorffii HOM05D005294 ORTHO05D006720 2.4e-15 87.8 166 35.5
Aqoxy4G01951 Aquilegia oxysepala HOM05D005294 ORTHO05D006720 2.6e-14 84.3 72 58.3
SGA_v2.0_scaffold194G40752 Striga asiatica HOM05D005294 ORTHO05D006720 9.2e-12 75.9 73 50.7
Zm00001eb382850 Zea mays HOM05D005294 ORTHO05D006720 1.2e-11 75.5 87 46.0
Zm00001eb383990 Zea mays HOM05D005294 ORTHO05D006720 2.1e-11 74.7 87 46.0
GSVIVG01027373001 Vitis vinifera HOM05D005294 ORTHO05D006720 1.6e-08 65.1 39 69.2
GSVIVG01038419001 Vitis vinifera HOM05D005294 ORTHO05D008307 1.6e-08 65.1 38 71.1
Cc06_g10970 Coffea canephora HOM05D005294 ORTHO05D038989 2.6e-06 57.8 40 67.5


User provided reference genes

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