Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc314.3 Carica papaya HOM05D004062 ORTHO05D004417 3.4e-62 241.5 124 100.0
Potri.010G119200 Populus trichocarpa HOM05D004062 ORTHO05D004417 8.8e-34 147.1 121 61.2
Thecc.02G220400 Theobroma cacao HOM05D004062 ORTHO05D004417 1.3e-32 143.3 124 62.9
Sabra10G0089600 Salix brachista HOM05D004062 ORTHO05D004417 4.8e-32 141.4 121 61.2
CiPaw.05G243300 Carya illinoinensis HOM05D004062 ORTHO05D004417 2.1e-27 125.9 127 55.1
Prupe.1G317700 Prunus persica HOM05D004062 ORTHO05D004417 2.7e-27 125.6 129 56.6
Prupe.1G317600 Prunus persica HOM05D004062 ORTHO05D004417 6.1e-27 124.4 126 55.6
Thecc.04G128000 Theobroma cacao HOM05D004062 ORTHO05D004417 2.0e-25 119.4 127 50.4
Ciclev10017837m.g Citrus clementina HOM05D004062 ORTHO05D004417 3.3e-25 118.6 130 53.1
Ciclev10017934m.g Citrus clementina HOM05D004062 ORTHO05D004417 7.5e-25 117.5 127 55.9
RcHm_v2.0_Chr4g0434311 Rosa chinensis HOM05D004062 ORTHO05D004417 9.7e-25 117.1 129 51.9
FAN07G0530 Fragaria x ananassa HOM05D004062 ORTHO05D004417 6.3e-24 114.4 130 51.5
FAN07G0543 Fragaria x ananassa HOM05D004062 ORTHO05D004417 6.3e-24 114.4 130 50.0
FvH4_4g26620 Fragaria vesca HOM05D004062 ORTHO05D004417 8.2e-24 114.0 130 51.5
FvH4_4g26630 Fragaria vesca HOM05D004062 ORTHO05D004417 8.2e-24 114.0 130 50.0
FAN12G0456 Fragaria x ananassa HOM05D004062 ORTHO05D004417 8.2e-24 114.0 130 50.0
FAN12G1602 Fragaria x ananassa HOM05D004062 ORTHO05D004417 8.2e-24 114.0 130 51.5
FAN12G4350 Fragaria x ananassa HOM05D004062 ORTHO05D004417 8.2e-24 114.0 130 50.0
FAN17G2092 Fragaria x ananassa HOM05D004062 ORTHO05D004417 8.2e-24 114.0 130 49.2
FAN17G2061 Fragaria x ananassa HOM05D004062 ORTHO05D004417 1.1e-23 113.6 130 51.5
FAN22G1760 Fragaria x ananassa HOM05D004062 ORTHO05D004417 1.8e-23 112.8 130 49.2
TAR629G2241 Trochodendron aralioides HOM05D004062 ORTHO05D004417 5.3e-23 111.3 128 52.3
Ciclev10018020m.g Citrus clementina HOM05D004062 ORTHO05D004417 7.0e-23 110.9 131 53.4
FvH4_4g26590 Fragaria vesca HOM05D004062 ORTHO05D004417 7.0e-23 110.9 130 50.8
RcHm_v2.0_Chr4g0434241 Rosa chinensis HOM05D004062 ORTHO05D004417 7.0e-23 110.9 126 50.0
FAN12G1821 Fragaria x ananassa HOM05D004062 ORTHO05D004417 9.1e-23 110.5 129 50.4
Dinv16146 Davidia involucrata HOM05D004062 ORTHO05D004417 1.6e-22 109.8 116 53.4
Hma1.2p1_0767F.1_g215470 Hydrangea macrophylla HOM05D004062 ORTHO05D004417 1.6e-22 109.8 121 47.1
FAN12G3833 Fragaria x ananassa HOM05D004062 ORTHO05D004417 2.0e-22 109.4 129 50.4
FAN22G1832 Fragaria x ananassa HOM05D004062 ORTHO05D004417 4.5e-22 108.2 130 50.0
Nn4g23971 Nelumbo nucifera HOM05D004062 ORTHO05D004417 4.5e-22 108.2 125 47.2
Dinv34790 Davidia involucrata HOM05D002710 ORTHO05D002905 7.7e-22 107.5 122 47.5
QL02p050215 Quercus lobata HOM05D004062 ORTHO05D004417 1.3e-21 106.7 125 46.4
Rhsim08G0083900 Rhododendron simsii HOM05D004062 ORTHO05D004417 1.3e-21 106.7 126 43.7
Nn3g17968 Nelumbo nucifera HOM05D004062 ORTHO05D004417 1.7e-21 106.3 123 48.8
TAR622G0216 Trochodendron aralioides HOM05D004062 ORTHO05D004417 2.2e-21 105.9 122 49.2
FvH4_4g26582 Fragaria vesca HOM05D004062 ORTHO05D004417 2.9e-21 105.5 127 47.2
Rhsim09G0103200 Rhododendron simsii HOM05D004062 ORTHO05D004417 2.9e-21 105.5 121 48.8
Manes.14G107900 Manihot esculenta HOM05D004062 ORTHO05D004417 3.8e-21 105.1 125 50.4
Aqoxy3G03996 Aquilegia oxysepala HOM05D004062 ORTHO05D004417 5.0e-21 104.8 127 48.0
Ciclev10018255m.g Citrus clementina HOM05D004062 ORTHO05D004417 8.5e-21 104.0 130 53.1
Haze_00662 Corylus avellana HOM05D004062 ORTHO05D004417 8.5e-21 104.0 123 52.8
Haze_14190 Corylus avellana HOM05D004062 ORTHO05D004417 8.5e-21 104.0 122 45.1
Duzib138G0221 Durio zibethinus HOM05D004062 ORTHO05D004417 8.5e-21 104.0 124 45.2
Eucgr.B02857 Eucalyptus grandis HOM05D004062 ORTHO05D004417 1.1e-20 103.6 132 49.2
FAN22G1944 Fragaria x ananassa HOM05D004062 ORTHO05D004417 1.5e-20 103.2 127 46.5
CiPaw.04G044300 Carya illinoinensis HOM05D004062 ORTHO05D004417 2.5e-20 102.4 125 44.8
TAR622G1405 Trochodendron aralioides HOM05D004062 ORTHO05D004417 2.5e-20 102.4 119 49.6
Gohir.A11G166400 Gossypium hirsutum HOM05D004062 ORTHO05D004417 4.2e-20 101.7 121 46.3
Dinv33967 Davidia involucrata HOM05D004062 ORTHO05D004417 1.2e-19 100.1 127 44.9
PGR004G1762 Punica granatum HOM05D004062 ORTHO05D004417 2.7e-19 99.0 126 42.1
MBI16_g14298_MAGBIO Magnolia biondii HOM05D004062 ORTHO05D004417 3.6e-19 98.6 121 47.9
PGR102G0077 Punica granatum HOM05D004062 ORTHO05D004417 3.6e-19 98.6 132 44.7
Eucgr.F02795 Eucalyptus grandis HOM05D004062 ORTHO05D004417 4.7e-19 98.2 125 44.8
MBI16_g14297_MAGBIO Magnolia biondii HOM05D004062 ORTHO05D004417 4.7e-19 98.2 121 47.9
Aqoxy3G03995 Aquilegia oxysepala HOM05D004062 ORTHO05D004417 2.3e-18 95.9 124 46.0
CiPaw.05G243400 Carya illinoinensis HOM05D004062 ORTHO05D004417 2.3e-18 95.9 116 46.6
Gohir.D11G172800 Gossypium hirsutum HOM05D004062 ORTHO05D004417 5.2e-18 94.7 121 47.1
MBI16_g14296_MAGBIO Magnolia biondii HOM05D004062 ORTHO05D004417 5.2e-18 94.7 120 47.5
Rhsim09G0103100 Rhododendron simsii HOM05D004062 ORTHO05D004417 5.2e-18 94.7 122 45.1
COL.COLO4_09380 Corchorus olitorius HOM05D004062 ORTHO05D004417 6.8e-18 94.4 124 43.5
Ciclev10017483m.g Citrus clementina HOM05D004062 ORTHO05D004417 8.8e-18 94.0 129 48.8
CANSAT01G2259 Cannabis sativa HOM05D004062 ORTHO05D004417 1.2e-17 93.6 126 45.2
ClCG01G005940 Citrullus lanatus HOM05D004062 ORTHO05D004417 1.2e-17 93.6 130 46.9
Gohir.D11G172400 Gossypium hirsutum HOM05D004062 ORTHO05D004417 1.2e-17 93.6 121 47.1
Gorai.007G185100 Gossypium raimondii HOM05D004062 ORTHO05D004417 2.6e-17 92.4 121 46.3
MBI18_g04358_MAGBIO Magnolia biondii HOM05D004062 ORTHO05D004417 2.6e-17 92.4 121 47.1
CiPaw.03G065300 Carya illinoinensis HOM05D004062 ORTHO05D004417 4.4e-17 91.7 126 44.4
Dinv31584 Davidia involucrata HOM05D004062 ORTHO05D004417 9.8e-17 90.5 106 51.9
Aqoxy3G03994 Aquilegia oxysepala HOM05D004062 ORTHO05D004417 1.7e-16 89.7 126 42.1
Cc07_g08490 Coffea canephora HOM05D004062 ORTHO05D004417 2.2e-16 89.4 122 42.6
MBI10_g08537_MAGBIO Magnolia biondii HOM05D004062 ORTHO05D004417 2.8e-16 89.0 128 40.6
Atru.chr11.263 Acer truncatum HOM05D004062 ORTHO05D004417 3.7e-16 88.6 112 46.4
Atru.chr11.283 Acer truncatum HOM05D004062 ORTHO05D004417 3.7e-16 88.6 112 46.4
CSS0019285 Camellia sinensis var. sinensis HOM05D004062 ORTHO05D004417 3.7e-16 88.6 127 40.2
Cfa015828 Carpinus fangiana HOM05D004062 ORTHO05D004417 3.7e-16 88.6 126 43.7
Sabra04G0064400 Salix brachista HOM05D004062 ORTHO05D004417 3.7e-16 88.6 128 41.4
Migut.H00242 Erythranthe guttata HOM05D004062 ORTHO05D004417 6.3e-16 87.8 125 41.6
CSS0038275 Camellia sinensis var. sinensis HOM05D004062 ORTHO05D004417 8.3e-16 87.4 127 40.2
Glyma.02G089400 Glycine max HOM05D004062 ORTHO05D004417 8.3e-16 87.4 124 41.1
Potri.017G119800 Populus trichocarpa HOM05D004062 ORTHO05D004417 8.3e-16 87.4 126 38.9
TWI31G0152 Tripterygium wilfordii HOM05D004062 ORTHO05D004417 1.1e-15 87.0 125 46.4
Potri.004G095150 Populus trichocarpa HOM05D004062 ORTHO05D004417 1.4e-15 86.7 126 41.3
Potri.004G095200 Populus trichocarpa HOM05D004062 ORTHO05D004417 1.4e-15 86.7 126 41.3
Aqoxy3G03997 Aquilegia oxysepala HOM05D004062 ORTHO05D004417 1.8e-15 86.3 129 41.9
Eucgr.G02232 Eucalyptus grandis HOM05D004062 ORTHO05D004417 2.4e-15 85.9 121 42.1
Hma1.2p1_0500F.1_g167200 Hydrangea macrophylla HOM05D004062 ORTHO05D004417 7.0e-15 84.3 126 40.5
Actinidia14929 Actinidia chinensis HOM05D004062 ORTHO05D004417 2.0e-14 82.8 123 43.9
Glyma.18G293600 Glycine max HOM05D004062 ORTHO05D004417 3.5e-14 82.0 122 38.5
Manes.01G113100 Manihot esculenta HOM05D004062 ORTHO05D004417 4.5e-14 81.6 120 37.5
MSTRG.23597 Avicennia marina HOM05D004062 ORTHO05D004417 7.7e-14 80.9 122 39.3
Sabra17G0098800 Salix brachista HOM05D004062 ORTHO05D004417 7.7e-14 80.9 121 43.0
Ciclev10013069m.g Citrus clementina HOM05D004062 ORTHO05D004417 1.0e-13 80.5 121 40.5
Ciclev10013071m.g Citrus clementina HOM05D004062 ORTHO05D004417 1.3e-13 80.1 118 39.8
MELO3C005337.2 Cucumis melo HOM05D004062 ORTHO05D004417 1.3e-13 80.1 122 39.3
Cc11_g09580 Coffea canephora HOM05D004062 ORTHO05D004417 1.7e-13 79.7 130 40.0
Rhsim10G0073300 Rhododendron simsii HOM05D004062 ORTHO05D004417 2.2e-13 79.3 122 39.3
Cfa015829 Carpinus fangiana HOM05D004062 ORTHO05D004417 5.0e-13 78.2 80 53.8
Oeu012583.1 Olea europaea HOM05D004062 ORTHO05D004417 5.0e-13 78.2 123 39.0
arahy.Tifrunner.gnm1.ann1.56V7KA Arachis hypogaea HOM05D004062 ORTHO05D004417 6.5e-13 77.8 124 39.5
arahy.Tifrunner.gnm1.ann1.RE711V Arachis hypogaea HOM05D004062 ORTHO05D004417 6.5e-13 77.8 124 39.5
CANSAT78G1768 Cannabis sativa HOM05D004062 ORTHO05D004417 6.5e-13 77.8 122 40.2
Lj1g0027246 Lotus japonicus HOM05D004062 ORTHO05D004417 6.5e-13 77.8 126 38.9
Manes.02G072000 Manihot esculenta HOM05D004062 ORTHO05D004417 8.5e-13 77.4 123 38.2
Actinidia15903 Actinidia chinensis HOM05D002710 ORTHO05D002905 1.1e-12 77.0 127 34.6
Lj1g0013725 Lotus japonicus HOM05D004062 ORTHO05D004417 1.9e-12 76.3 122 35.2
SalBow5G1592 Salvia bowleyana HOM05D004062 ORTHO05D004417 2.5e-12 75.9 121 38.0
SalBow3G0055 Salvia bowleyana HOM05D004062 ORTHO05D004417 4.2e-12 75.1 101 37.6
Lsat_1_v5_gn_3_82781 Lactuca sativa HOM05D004062 ORTHO05D004417 5.5e-12 74.7 122 37.7
Lalb_Chr17g0335981 Lupinus albus HOM05D004062 ORTHO05D004417 5.5e-12 74.7 120 40.0
Oeu047438.1 Olea europaea HOM05D004062 ORTHO05D004417 2.1e-11 72.8 119 34.5
PGSC0003DMG400016976 Solanum tuberosum HOM05D004062 ORTHO05D004417 2.1e-11 72.8 123 37.4
PGSC0003DMG400030667 Solanum tuberosum HOM05D004062 ORTHO05D004417 2.1e-11 72.8 123 37.4
SGA_v2.0_scaffold202G41473 Striga asiatica HOM05D004062 ORTHO05D004417 3.6e-11 72.0 117 37.6
Ah.16g101490 Amaranthus hybridus HOM05D004062 ORTHO05D004417 1.0e-10 70.5 129 31.0
Ciclev10013668m.g Citrus clementina HOM05D004062 ORTHO05D004417 2.3e-10 69.3 126 38.1
EL10Ac2g04523 Beta vulgaris HOM05D004062 ORTHO05D004417 4.0e-10 68.6 131 29.0
MBI18_g42974_MAGBIO Magnolia biondii HOM05D003529 ORTHO05D004106 4.0e-10 68.6 126 36.5
MBI18_g45029_MAGBIO Magnolia biondii HOM05D003529 ORTHO05D004106 4.0e-10 68.6 126 36.5
DCAR_010712 Daucus carota HOM05D004062 ORTHO05D004417 5.2e-10 68.2 119 38.7
Medtr7g082730 Medicago truncatula HOM05D004062 ORTHO05D004417 5.2e-10 68.2 125 36.8
DCAR_023626 Daucus carota HOM05D004062 ORTHO05D004417 8.8e-10 67.4 124 38.7
ATR0706G120 Amborella trichopoda HOM05D003529 ORTHO05D004106 1.2e-09 67.0 127 34.6
Migut.L00492 Erythranthe guttata HOM05D004062 ORTHO05D004417 1.2e-09 67.0 130 33.1
Oeu030797.1 Olea europaea HOM05D004062 ORTHO05D004417 1.5e-09 66.6 119 39.5
Oeu030798.1 Olea europaea HOM05D004062 ORTHO05D004417 1.5e-09 66.6 119 39.5
CsaV3_5G028760 Cucumis sativus L. HOM05D004062 ORTHO05D004417 2.6e-09 65.9 133 34.6
Phvul.008G008800 Phaseolus vulgaris HOM05D004062 ORTHO05D004417 2.6e-09 65.9 126 36.5
DCAR_010711 Daucus carota HOM05D004062 ORTHO05D004417 3.4e-09 65.5 129 33.3
VMungo1383G0607 Vigna mungo HOM05D004062 ORTHO05D004417 4.4e-09 65.1 122 32.8
DCAR_010706 Daucus carota HOM05D004062 ORTHO05D004417 5.7e-09 64.7 128 35.9
Lj1g0017758 Lotus japonicus HOM05D004062 ORTHO05D004417 5.7e-09 64.7 132 34.1
DCAR_010708 Daucus carota HOM05D004062 ORTHO05D004417 7.5e-09 64.3 116 32.8
Medtr7g082700 Medicago truncatula HOM05D004062 ORTHO05D004417 7.5e-09 64.3 127 37.0
Medtr7g082740 Medicago truncatula HOM05D004062 ORTHO05D004417 7.5e-09 64.3 127 37.0
DCAR_010713 Daucus carota HOM05D004062 ORTHO05D004417 9.8e-09 63.9 124 37.9
Phvul.008G008700 Phaseolus vulgaris HOM05D004062 ORTHO05D004417 9.8e-09 63.9 122 35.2
VMungo1383G2158 Vigna mungo HOM05D004062 ORTHO05D004417 9.8e-09 63.9 125 33.6
Atru.chr1.1607 Acer truncatum HOM05D004062 ORTHO05D004417 1.3e-08 63.5 133 35.3
CsaV3_4G001080 Cucumis sativus L. HOM05D003529 ORTHO05D004106 1.3e-08 63.5 129 32.6
HPP92_009718 Vanilla planifolia HOM05D004062 ORTHO05D004417 1.7e-08 63.2 131 37.4
SEGI_14476 Sequoiadendron giganteum HOM05D003529 ORTHO05D004106 2.2e-08 62.8 121 34.7
Ca_08096_v3 Cicer arietinum L. HOM05D004062 ORTHO05D004417 3.7e-08 62.0 125 30.4
Psat3g097280 Pisum sativum HOM05D004062 ORTHO05D004417 3.7e-08 62.0 119 34.5
Aqoxy3G00188 Aquilegia oxysepala HOM05D004062 ORTHO05D004417 4.9e-08 61.6 121 35.5
ClCG10G011190 Citrullus lanatus HOM05D003529 ORTHO05D004106 6.3e-08 61.2 141 31.9
SEGI_27005 Sequoiadendron giganteum HOM05D003529 ORTHO05D004106 6.3e-08 61.2 76 43.4
Duzib133G0282 Durio zibethinus HOM05D003529 ORTHO05D004106 1.1e-07 60.5 114 34.2
DCAR_010707 Daucus carota HOM05D004062 ORTHO05D004417 1.4e-07 60.1 128 31.2
Lalb_Chr04g0257671 Lupinus albus HOM05D004062 ORTHO05D004417 1.8e-07 59.7 124 33.9
Nn3g21602 Nelumbo nucifera HOM05D003529 ORTHO05D004106 3.1e-07 58.9 128 33.6
Psat3g097320 Pisum sativum HOM05D004062 ORTHO05D004417 3.1e-07 58.9 124 33.1
SGA_v2.0_scaffold334G49044 Striga asiatica HOM05D003529 ORTHO05D004106 3.1e-07 58.9 125 31.2
MELO3C017929.2 Cucumis melo HOM05D003529 ORTHO05D004106 4.1e-07 58.5 141 31.2
Oeu041981.1 Olea europaea HOM05D004062 ORTHO05D004417 4.1e-07 58.5 119 37.0
Sed0005967 Sechium edule HOM05D003529 ORTHO05D004106 4.1e-07 58.5 128 33.6
HPP92_006902 Vanilla planifolia HOM05D003529 ORTHO05D004106 4.1e-07 58.5 123 33.3
DCAR_010710 Daucus carota HOM05D004062 ORTHO05D004417 7.0e-07 57.8 129 30.2
CDE10G0393 Ceratophyllum demersum HOM05D004062 ORTHO05D004417 9.2e-07 57.4 122 32.0
Rhsim13G0007500 Rhododendron simsii HOM05D003529 ORTHO05D004106 9.2e-07 57.4 120 35.0
HanXRQChr04g0114591 Helianthus annuus HOM05D003529 ORTHO05D004106 2.7e-06 55.8 113 38.9
Oeu011480.1 Olea europaea HOM05D003529 ORTHO05D004106 3.5e-06 55.5 132 32.6
Manes.01G224100 Manihot esculenta HOM05D003529 ORTHO05D004106 4.5e-06 55.1 114 36.8
Sed0027184 Sechium edule HOM05D004062 ORTHO05D004417 4.5e-06 55.1 87 41.4
BcaC07g40776 Brassica carinata HOM05D003529 ORTHO05D004106 5.9e-06 54.7 129 34.1
CSS0011800 Camellia sinensis var. sinensis HOM05D003529 ORTHO05D004106 5.9e-06 54.7 121 36.4
Duzib211G0236 Durio zibethinus HOM05D003529 ORTHO05D004106 5.9e-06 54.7 118 33.9
Os05g0576600 Oryza sativa ssp. japonica HOM05D025274 ORTHO05D026015 5.9e-06 54.7 136 33.8
SEGI_10792 Sequoiadendron giganteum HOM05D003529 ORTHO05D004106 5.9e-06 54.7 121 30.6
Cpa.g.sc151.47 Carica papaya HOM05D003529 ORTHO05D004106 7.7e-06 54.3 121 33.9
Duzib138G1135 Durio zibethinus HOM05D003529 ORTHO05D004106 7.7e-06 54.3 131 33.6


User provided reference genes

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