Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc30.99 Carica papaya HOM05D005903 ORTHO05D007293 4.0e-190 667.9 332 100.0
QL11p012010 Quercus lobata HOM05D005903 ORTHO05D007293 2.1e-146 522.7 330 77.0
Atru.chr10.296 Acer truncatum HOM05D005903 ORTHO05D007293 7.8e-146 520.8 330 75.8
Thecc.02G003100 Theobroma cacao HOM05D005903 ORTHO05D007293 3.3e-144 515.4 330 74.8
Manes.03G070940 Manihot esculenta HOM05D005903 ORTHO05D007293 1.2e-143 513.5 330 75.2
BraA06t25085Z Brassica rapa HOM05D005903 ORTHO05D007293 2.8e-143 512.3 332 75.9
Eucgr.A00192 Eucalyptus grandis HOM05D005903 ORTHO05D007293 2.8e-143 512.3 330 75.8
Thhalv10011094m.g Eutrema salsugineum HOM05D005903 ORTHO05D007293 2.8e-143 512.3 331 75.2
Potri.001G076200 Populus trichocarpa HOM05D005903 ORTHO05D007293 4.7e-143 511.5 330 76.7
BolC3t19474H Brassica oleracea HOM05D005903 ORTHO05D007293 6.2e-143 511.1 331 75.2
AT3G47630 Arabidopsis thaliana HOM05D005903 ORTHO05D007293 1.1e-142 510.4 331 74.3
BcaC01g01793 Brassica carinata HOM05D005903 ORTHO05D007293 1.4e-142 510.0 331 75.2
C03p71840 Brassica napus HOM05D005903 ORTHO05D007293 1.4e-142 510.0 331 75.2
A06p19990 Brassica napus HOM05D005903 ORTHO05D007293 1.8e-142 509.6 332 75.6
BolC8t51059H Brassica oleracea HOM05D005903 ORTHO05D007293 9.0e-142 507.3 331 74.9
GSVIVG01012154001 Vitis vinifera HOM05D005903 ORTHO05D007293 1.5e-141 506.5 330 76.4
Dinv07001 Davidia involucrata HOM05D005903 ORTHO05D007293 4.4e-141 505.0 327 74.3
Carub.0005s1376 Capsella rubella HOM05D005903 ORTHO05D007293 5.8e-141 504.6 331 74.0
AL5G26920 Arabidopsis lyrata HOM05D005903 ORTHO05D007293 9.9e-141 503.8 331 74.0
C08p34580 Brassica napus HOM05D005903 ORTHO05D007293 1.3e-140 503.4 331 74.3
BraA09t40620Z Brassica rapa HOM05D005903 ORTHO05D007293 1.3e-140 503.4 331 74.0
BcaC07g40489 Brassica carinata HOM05D005903 ORTHO05D007293 1.7e-140 503.1 331 74.3
CiPaw.09G138500 Carya illinoinensis HOM05D005903 ORTHO05D007293 1.7e-140 503.1 323 75.2
PGR044G2521 Punica granatum HOM05D005903 ORTHO05D007293 1.4e-139 500.0 331 74.0
BcaB01g00896 Brassica carinata HOM05D005903 ORTHO05D007293 1.9e-139 499.6 330 74.5
A09p51850 Brassica napus HOM05D005903 ORTHO05D007293 1.9e-139 499.6 331 73.7
Sp1g31680 Schrenkiella parvula HOM05D005903 ORTHO05D007293 9.3e-139 497.3 330 71.5
TAR624G0428 Trochodendron aralioides HOM05D005903 ORTHO05D007293 9.3e-139 497.3 330 73.6
Aa31LG9G16250 Aethionema arabicum HOM05D005903 ORTHO05D007293 1.2e-138 496.9 331 72.5
Hma1.2p1_0088F.1_g045276 Hydrangea macrophylla HOM05D005903 ORTHO05D007293 1.6e-138 496.5 330 72.1
CARHR156310 Cardamine hirsuta HOM05D005903 ORTHO05D007293 7.8e-138 494.2 330 71.8
FAN11G1857 Fragaria x ananassa HOM05D005903 ORTHO05D007293 1.3e-137 493.4 331 73.7
FAN16G3015 Fragaria x ananassa HOM05D005903 ORTHO05D007293 1.3e-137 493.4 331 73.7
THA.LOC104812245 Tarenaya hassleriana HOM05D005903 ORTHO05D007293 1.7e-137 493.0 364 67.3
Nn7g38356 Nelumbo nucifera HOM05D005903 ORTHO05D007293 2.3e-137 492.7 327 74.0
FvH4_3g13050 Fragaria vesca HOM05D005903 ORTHO05D007293 3.9e-137 491.9 331 73.4
FAN21G0687 Fragaria x ananassa HOM05D005903 ORTHO05D007293 3.9e-137 491.9 331 73.4
RcHm_v2.0_Chr5g0021241 Rosa chinensis HOM05D005903 ORTHO05D007293 3.9e-137 491.9 331 74.0
THA.LOC104824626 Tarenaya hassleriana HOM05D005903 ORTHO05D007293 3.3e-136 488.8 364 67.3
Gohir.A11G047300 Gossypium hirsutum HOM05D005903 ORTHO05D007293 1.3e-135 486.9 324 72.8
Gohir.D11G050900 Gossypium hirsutum HOM05D005903 ORTHO05D007293 1.1e-134 483.8 324 72.8
Nitab4.5_0010610g0030 Nicotiana tabacum HOM05D005903 ORTHO05D007293 2.4e-134 482.6 330 68.2
Gorai.007G055300 Gossypium raimondii HOM05D005903 ORTHO05D007293 3.1e-134 482.3 324 72.5
FAN25G2454 Fragaria x ananassa HOM05D005903 ORTHO05D007293 1.2e-133 480.3 331 72.2
MD05G1245400 Malus domestica HOM05D005903 ORTHO05D007293 3.4e-133 478.8 332 71.1
CANSAT35G1866 Cannabis sativa HOM05D005903 ORTHO05D007293 3.8e-132 475.3 334 69.8
Nitab4.5_0000844g0290 Nicotiana tabacum HOM05D005903 ORTHO05D007293 5.4e-131 471.5 330 66.4
vmacro03560 Vaccinium macrocarpon HOM05D005903 ORTHO05D007293 5.4e-131 471.5 346 67.3
Solyc02g081840.4 Solanum lycopersicum HOM05D005903 ORTHO05D007293 9.3e-131 470.7 330 67.0
CsaV3_6G052990 Cucumis sativus L. HOM05D005903 ORTHO05D007293 2.1e-130 469.5 332 68.7
Migut.M02015 Erythranthe guttata HOM05D005903 ORTHO05D007293 6.0e-130 468.0 330 67.9
PGSC0003DMG400007316 Solanum tuberosum HOM05D005903 ORTHO05D007293 1.8e-129 466.5 330 66.7
Medtr4g094760 Medicago truncatula HOM05D005903 ORTHO05D007293 3.0e-129 465.7 330 67.3
MELO3C007010.2 Cucumis melo HOM05D005903 ORTHO05D007293 5.1e-129 464.9 332 67.5
ClCG01G025750 Citrullus lanatus HOM05D005903 ORTHO05D007293 6.7e-129 464.5 332 69.0
Lj4g0014401 Lotus japonicus HOM05D005903 ORTHO05D007293 1.9e-128 463.0 320 69.1
EL10Ac5g11217 Beta vulgaris HOM05D005903 ORTHO05D007293 2.5e-128 462.6 330 66.4
CAN.G809.52 Capsicum annuum HOM05D005903 ORTHO05D007293 4.3e-128 461.8 331 65.6
Dinv26323 Davidia involucrata HOM05D005903 ORTHO05D007293 5.6e-128 461.5 300 74.3
Sabra01G0053000 Salix brachista HOM05D005903 ORTHO05D007293 2.8e-127 459.1 334 71.6
Migut.G01043 Erythranthe guttata HOM05D005903 ORTHO05D007293 4.8e-127 458.4 323 67.8
PSO675G2427 Papaver somniferum HOM05D005903 ORTHO05D007293 4.8e-127 458.4 327 67.6
Cc09_g05110 Coffea canephora HOM05D005903 ORTHO05D007293 6.2e-127 458.0 330 66.4
VMungo0251G1440 Vigna mungo HOM05D005903 ORTHO05D007293 1.4e-126 456.8 320 68.8
Glyma.08G089000 Glycine max HOM05D005903 ORTHO05D007293 9.0e-126 454.1 320 68.1
AUR62036920 Chenopodium quinoa HOM05D005903 ORTHO05D007293 9.9e-125 450.7 330 65.2
Ciclev10016117m.g Citrus clementina HOM05D005903 ORTHO05D007293 1.7e-124 449.9 292 74.0
Lsat_1_v5_gn_1_24420 Lactuca sativa HOM05D005903 ORTHO05D007293 2.2e-124 449.5 322 68.6
Ca_18231_v3 Cicer arietinum L. HOM05D005903 ORTHO05D007293 2.9e-124 449.1 320 66.9
Duzib052G0373 Durio zibethinus HOM05D005903 ORTHO05D007293 3.8e-124 448.7 352 66.2
TPR.G23817 Trifolium pratense HOM05D005903 ORTHO05D007293 3.8e-124 448.7 330 65.8
Cc00_g27340 Coffea canephora HOM05D005903 ORTHO05D007293 6.4e-124 448.0 323 66.6
CSS0034787 Camellia sinensis var. sinensis HOM05D005903 ORTHO05D007293 7.1e-123 444.5 314 71.3
Glyma.05G134300 Glycine max HOM05D005903 ORTHO05D007293 2.1e-122 443.0 320 66.9
DCAR_003756 Daucus carota HOM05D005903 ORTHO05D007293 2.7e-122 442.6 365 59.2
HanXRQChr12g0369311 Helianthus annuus HOM05D005903 ORTHO05D007293 1.8e-121 439.9 327 66.1
ECA247G0018 Erigeron canadensis HOM05D005903 ORTHO05D007293 2.3e-121 439.5 326 66.6
Rhsim05G0003000 Rhododendron simsii HOM05D005903 ORTHO05D007293 3.3e-120 435.6 384 59.9
Hund09980 Selenicereus undatus HOM05D005903 ORTHO05D007293 3.3e-120 435.6 377 57.8
Hma1.2p1_0088F.1_g045273 Hydrangea macrophylla HOM05D005903 ORTHO05D007293 4.8e-119 431.8 344 64.5
Hma1.2p1_1011F.1_g247520 Hydrangea macrophylla HOM05D005903 ORTHO05D007293 8.2e-119 431.0 344 64.5
Sed0025041 Sechium edule HOM05D005903 ORTHO05D007293 1.1e-118 430.6 323 66.6
TWI63G1157 Tripterygium wilfordii HOM05D005903 ORTHO05D007293 1.1e-118 430.6 330 65.2
Rhsim13G0219000 Rhododendron simsii HOM05D005903 ORTHO05D007293 6.9e-118 427.9 330 64.2
Dinv01020 Davidia involucrata HOM05D005903 ORTHO05D007293 2.6e-117 426.0 327 65.4
Aqoxy7G00859 Aquilegia oxysepala HOM05D005903 ORTHO05D007293 4.6e-114 415.2 327 62.7
ATR0605G282 Amborella trichopoda HOM05D005903 ORTHO05D007293 1.8e-113 413.3 329 62.3
arahy.Tifrunner.gnm1.ann1.7A7AL1 Arachis hypogaea HOM05D005903 ORTHO05D007293 1.1e-112 410.6 330 61.8
Haze_05254 Corylus avellana HOM05D005903 ORTHO05D007293 1.5e-109 400.2 323 64.1
Lj1C1150G3 Lonicera japonica HOM05D005903 ORTHO05D007293 8.5e-108 394.4 293 66.9
PSO675G2002 Papaver somniferum HOM05D005903 ORTHO05D007293 1.4e-107 393.7 327 59.3
Rhsim07G0106900 Rhododendron simsii HOM05D005903 ORTHO05D007293 8.7e-105 384.4 330 60.0
SGA_v2.0_scaffold31G12765 Striga asiatica HOM05D005903 ORTHO05D007293 9.7e-104 380.9 327 59.3
Prupe.7G025500 Prunus persica HOM05D005903 ORTHO05D007293 1.3e-103 380.6 236 76.3
Psat7g087640 Pisum sativum HOM05D005903 ORTHO05D007293 1.7e-103 380.2 252 70.2
AUR62032162 Chenopodium quinoa HOM05D005903 ORTHO05D007293 9.4e-99 364.4 276 65.2
Prupe.4G118500 Prunus persica HOM05D005903 ORTHO05D007293 1.6e-98 363.6 244 73.8
SEGI_28167 Sequoiadendron giganteum HOM05D005903 ORTHO05D007293 1.6e-98 363.6 330 57.9
Sopen02g026460 Solanum pennellii HOM05D005903 ORTHO05D007293 3.9e-97 359.0 255 68.6
Phvul.002G188100 Phaseolus vulgaris HOM05D005903 ORTHO05D007293 2.6e-96 356.3 263 66.5
HPP92_021274 Vanilla planifolia HOM05D005903 ORTHO05D007293 2.2e-95 353.2 328 55.5
Peaxi162Scf00036g02217 Petunia axillaris HOM05D005903 ORTHO05D007293 3.1e-94 349.4 294 57.5
COL.COLO4_05791 Corchorus olitorius HOM05D005903 ORTHO05D007293 2.2e-92 343.2 194 82.0
CDE06G1059 Ceratophyllum demersum HOM05D005903 ORTHO05D007293 6.5e-92 341.7 334 55.1
arahy.Tifrunner.gnm1.ann1.STP4KF Arachis hypogaea HOM05D005903 ORTHO05D007293 4.8e-87 325.5 331 52.0
Lalb_Chr07g0188231 Lupinus albus HOM05D005903 ORTHO05D007293 1.5e-80 303.9 183 77.0
Zm00001eb201720 Zea mays HOM05D005903 ORTHO05D007293 1.6e-77 293.9 229 62.0
Os11g0549650 Oryza sativa ssp. japonica HOM05D005903 ORTHO05D007293 5.9e-77 292.0 216 63.4
SMO367G0859 Selaginella moellendorffii HOM05D005903 ORTHO05D007293 1.9e-75 287.0 331 46.5
AagrBONN_evm.TU.Sc2ySwM_344.2832 Anthoceros agrestis HOM05D005903 ORTHO05D007293 2.7e-74 283.1 326 47.2
Pp3c7_4190 Physcomitrium patens HOM05D005903 ORTHO05D007293 2.0e-72 276.9 337 45.1
Mapoly0019s0171 Marchantia polymorpha HOM05D005903 ORTHO05D007293 2.8e-71 273.1 331 45.0
Oeu056062.1 Olea europaea HOM05D005903 ORTHO05D007293 2.0e-69 266.9 166 72.3
unitig_46.g18341 Utricularia gibba HOM05D005903 ORTHO05D007293 9.8e-64 248.1 327 45.0
Gohir.D11G050975 Gossypium hirsutum HOM05D005903 ORTHO05D007293 3.8e-60 236.1 170 69.4
Sc04g0004120 Simmondsia chinensis HOM05D005903 ORTHO05D007293 1.4e-54 217.6 123 76.4
Os11g0549690 Oryza sativa ssp. japonica HOM05D005903 ORTHO05D007293 7.8e-53 211.8 152 62.5
Sc04g0004130 Simmondsia chinensis HOM05D005903 ORTHO05D007293 7.5e-48 195.3 166 62.0
Haze_05249 Corylus avellana HOM05D005903 ORTHO05D007293 2.8e-42 176.8 200 55.0
CBR_g23454 Chara braunii HOM05D001496 ORTHO05D007453 7.5e-40 168.7 166 48.2
Cfa024540 Carpinus fangiana HOM05D005903 ORTHO05D007293 1.9e-38 164.1 320 34.7
MCO11G061 Micromonas commoda HOM05D005903 ORTHO05D007293 1.9e-38 164.1 351 31.6
Lalb_Chr07g0188221 Lupinus albus HOM05D005903 ORTHO05D007293 1.9e-35 154.1 140 55.0
Migut.O00470 Erythranthe guttata HOM05D005903 ORTHO05D007293 2.0e-32 144.1 144 54.9
Cre10.g436900 Chlamydomonas reinhardtii HOM05D005903 ORTHO05D007293 1.7e-31 141.0 307 32.2
CARHR106840 Cardamine hirsuta HOM05D005903 ORTHO05D007293 9.2e-30 135.2 120 59.2
PRCOL_00001260 Prasinoderma coloniale HOM05D005903 ORTHO05D007293 7.3e-27 125.6 353 29.7
Glyma.08G193350 Glycine max HOM05D005903 ORTHO05D007293 4.8e-18 96.3 60 75.0
COL.COLO4_05792 Corchorus olitorius HOM05D005903 ORTHO05D007293 1.1e-17 95.1 75 61.3
CAN.G508.15 Capsicum annuum HOM05D005903 ORTHO05D007293 6.9e-17 92.4 245 27.8
SHI32711 Sapria himalayana HOM05D005903 ORTHO05D007293 8.4e-15 85.5 67 58.2
Os05g0295700 Oryza sativa ssp. japonica HOM05D005903 ORTHO05D007293 1.9e-14 84.3 59 54.2
Oeu056063.2 Olea europaea HOM05D007234 ORTHO05D008488 1.9e-11 74.3 70 55.7
Cfa001138 Carpinus fangiana HOM05D000398 ORTHO05D000551 1.1e-09 68.6 64 54.7
CBR_g8146 Chara braunii HOM05D005903 ORTHO05D000048 9.0e-09 65.5 66 48.5
SHI32710 Sapria himalayana HOM05D005903 ORTHO05D007293 2.9e-07 60.5 91 44.0


User provided reference genes

Program Settings