Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc30.40 Carica papaya HOM05D000113 ORTHO05D005835 9.6e-39 163.3 101 100.0
Prupe.1G577400 Prunus persica HOM05D000113 ORTHO05D005835 4.1e-21 104.8 99 61.6
Manes.10G119700 Manihot esculenta HOM05D000113 ORTHO05D005835 9.1e-21 103.6 101 71.3
Gohir.D01G173900 Gossypium hirsutum HOM05D000113 ORTHO05D005835 3.4e-20 101.7 107 64.5
Gorai.002G216000 Gossypium raimondii HOM05D000113 ORTHO05D005835 3.4e-20 101.7 109 65.1
FvH4_5g21580 Fragaria vesca HOM05D000113 ORTHO05D005835 1.3e-19 99.8 71 78.9
Atru.chr6.768 Acer truncatum HOM05D000113 ORTHO05D005835 1.7e-19 99.4 101 61.4
FAN08G0819 Fragaria x ananassa HOM05D000113 ORTHO05D005835 2.2e-19 99.0 109 60.6
FAN18G0136 Fragaria x ananassa HOM05D000113 ORTHO05D005835 2.2e-19 99.0 109 60.6
RcHm_v2.0_Chr7g0209021 Rosa chinensis HOM05D000113 ORTHO05D005835 2.9e-19 98.6 71 77.5
A09p18610 Brassica napus HOM05D000113 ORTHO05D005835 5.0e-19 97.8 100 67.0
FAN04G1601 Fragaria x ananassa HOM05D000113 ORTHO05D005835 6.5e-19 97.4 71 77.5
Haze_10062 Corylus avellana HOM05D000113 ORTHO05D005835 1.1e-18 96.7 70 70.0
Cfa004507 Carpinus fangiana HOM05D003925 ORTHO05D005835 1.4e-18 96.3 69 71.0
MD15G1433800 Malus domestica HOM05D000113 ORTHO05D005835 1.4e-18 96.3 100 63.0
Actinidia39011 Actinidia chinensis HOM05D000113 ORTHO05D005835 1.9e-18 95.9 74 67.6
COL.COLO4_17738 Corchorus olitorius HOM05D000113 ORTHO05D005835 1.9e-18 95.9 106 65.1
Thecc.02G023600 Theobroma cacao HOM05D000113 ORTHO05D005835 1.9e-18 95.9 102 57.8
BcaB07g31161 Brassica carinata HOM05D000113 ORTHO05D005835 2.5e-18 95.5 100 65.0
AT1G58060 Arabidopsis thaliana HOM05D000113 ORTHO05D005835 4.2e-18 94.7 100 61.0
MSTRG.16496 Avicennia marina HOM05D000113 ORTHO05D005835 4.2e-18 94.7 100 56.0
AL2G17950 Arabidopsis lyrata HOM05D000113 ORTHO05D005835 5.5e-18 94.4 100 62.0
Sp2g05520 Schrenkiella parvula HOM05D000113 ORTHO05D005835 7.2e-18 94.0 100 58.0
Ah.02g128270 Amaranthus hybridus HOM05D000113 ORTHO05D005835 9.4e-18 93.6 70 70.0
vmacro01724 Vaccinium macrocarpon HOM05D000113 ORTHO05D005835 9.4e-18 93.6 73 67.1
Aa31LG2G11010 Aethionema arabicum HOM05D000113 ORTHO05D005835 1.2e-17 93.2 100 65.0
Duzib052G0463 Durio zibethinus HOM05D000113 ORTHO05D005835 1.2e-17 93.2 102 56.9
CiPaw.06G173200 Carya illinoinensis HOM05D000113 ORTHO05D005835 1.6e-17 92.8 102 66.7
Nitab4.5_0000948g0060 Nicotiana tabacum HOM05D000113 ORTHO05D005835 1.6e-17 92.8 72 66.7
Ciclev10000030m.g Citrus clementina HOM05D000113 ORTHO05D005835 2.1e-17 92.4 100 70.0
DCAR_029273 Daucus carota HOM05D000113 ORTHO05D005835 2.1e-17 92.4 70 70.0
Migut.B00785 Erythranthe guttata HOM05D000113 ORTHO05D005835 2.1e-17 92.4 100 53.0
Medtr4g134790 Medicago truncatula HOM05D000113 ORTHO05D005835 2.1e-17 92.4 71 67.6
Sopen01g046100 Solanum pennellii HOM05D000113 ORTHO05D005835 2.1e-17 92.4 102 52.9
CANSAT54G2975 Cannabis sativa HOM05D000113 ORTHO05D005835 2.7e-17 92.0 71 70.4
SGA_v2.0_scaffold272G46375 Striga asiatica HOM05D000113 ORTHO05D005835 2.7e-17 92.0 71 66.2
Oeu058638.1 Olea europaea HOM05D000113 ORTHO05D005835 3.6e-17 91.7 73 65.8
GSVIVG01023271001 Vitis vinifera HOM05D000113 ORTHO05D005835 3.6e-17 91.7 73 65.8
CSS0005911 Camellia sinensis var. sinensis HOM05D000113 ORTHO05D005835 4.7e-17 91.3 103 64.1
Glyma.17G001100 Glycine max HOM05D000113 ORTHO05D005835 4.7e-17 91.3 99 52.5
BcaC04g22109 Brassica carinata HOM05D000113 ORTHO05D005835 7.9e-17 90.5 100 68.0
C09p23220 Brassica napus HOM05D000113 ORTHO05D005835 7.9e-17 90.5 100 68.0
BolC9t55241H Brassica oleracea HOM05D000113 ORTHO05D005835 7.9e-17 90.5 100 68.0
HanXRQChr03g0065101 Helianthus annuus HOM05D000113 ORTHO05D005835 7.9e-17 90.5 71 67.6
Lsat_1_v5_gn_9_120661 Lactuca sativa HOM05D000113 ORTHO05D005835 7.9e-17 90.5 71 67.6
BraA09t37485Z Brassica rapa HOM05D000113 ORTHO05D005835 1.0e-16 90.1 100 65.0
Hund12935 Selenicereus undatus HOM05D008000 ORTHO05D010275 1.4e-16 89.7 72 69.4
ECA240G0867 Erigeron canadensis HOM05D000113 ORTHO05D005835 1.8e-16 89.4 73 67.1
Phvul.003G075000 Phaseolus vulgaris HOM05D000113 ORTHO05D005835 1.8e-16 89.4 74 64.9
Potri.004G222900 Populus trichocarpa HOM05D000113 ORTHO05D005835 1.8e-16 89.4 75 69.3
Ca_13538_v3 Cicer arietinum L. HOM05D000113 ORTHO05D005835 2.3e-16 89.0 99 55.6
Solyc01g103690.4 Solanum lycopersicum HOM05D000113 ORTHO05D005835 2.3e-16 89.0 102 51.0
TAR381G0519 Trochodendron aralioides HOM05D000113 ORTHO05D005835 2.3e-16 89.0 72 66.7
Carub.0002s0657 Capsella rubella HOM05D000113 ORTHO05D005835 3.0e-16 88.6 71 69.0
CAN.G798.54 Capsicum annuum HOM05D000113 ORTHO05D005835 3.0e-16 88.6 73 64.4
Sed0015728 Sechium edule HOM05D000113 ORTHO05D005835 3.0e-16 88.6 101 54.5
Thhalv10023215m.g Eutrema salsugineum HOM05D000113 ORTHO05D005835 5.1e-16 87.8 100 61.0
MELO3C019423.2 Cucumis melo HOM05D000113 ORTHO05D005835 8.8e-16 87.0 69 68.1
Sabra01G0168800 Salix brachista HOM05D000113 ORTHO05D005835 8.8e-16 87.0 103 68.0
CsaV3_3G019320 Cucumis sativus L. HOM05D000113 ORTHO05D005835 1.1e-15 86.7 69 68.1
CDE04G1155 Ceratophyllum demersum HOM05D000113 ORTHO05D005835 2.0e-15 85.9 100 49.0
Nn5g27790 Nelumbo nucifera HOM05D000113 ORTHO05D005835 2.0e-15 85.9 73 63.0
Psat4g000920 Pisum sativum HOM05D000113 ORTHO05D005835 2.0e-15 85.9 69 68.1
PGR042G0228 Punica granatum HOM05D000113 ORTHO05D005835 2.0e-15 85.9 99 51.5
EL10Ac6g14137 Beta vulgaris HOM05D000113 ORTHO05D005835 2.6e-15 85.5 76 60.5
AUR62041950 Chenopodium quinoa HOM05D000113 ORTHO05D005835 3.3e-15 85.1 74 63.5
ClCG05G009410 Citrullus lanatus HOM05D000113 ORTHO05D005835 3.3e-15 85.1 68 67.6
Hma1.2p1_0427F.1_g150740 Hydrangea macrophylla HOM05D000113 ORTHO05D005835 3.3e-15 85.1 74 63.5
QL02p100191 Quercus lobata HOM05D000113 ORTHO05D005835 3.3e-15 85.1 69 68.1
THA.LOC104820242 Tarenaya hassleriana HOM05D000113 ORTHO05D005835 4.4e-15 84.7 104 64.4
CSS0010677 Camellia sinensis var. sinensis HOM05D000113 ORTHO05D005835 7.4e-15 84.0 103 61.2
Lalb_Chr13g0304501 Lupinus albus HOM05D000113 ORTHO05D005835 9.7e-15 83.6 71 66.2
SalBow8G4197 Salvia bowleyana HOM05D000113 ORTHO05D005835 1.3e-14 83.2 102 48.0
AUR62040619 Chenopodium quinoa HOM05D000113 ORTHO05D005835 2.8e-14 82.0 74 60.8
TWI59G0289 Tripterygium wilfordii HOM05D000113 ORTHO05D005835 2.8e-14 82.0 66 63.6
Eucgr.G00347 Eucalyptus grandis HOM05D000113 ORTHO05D005835 3.7e-14 81.6 75 61.3
arahy.Tifrunner.gnm1.ann1.F0MMCG Arachis hypogaea HOM05D000113 ORTHO05D005835 4.8e-14 81.3 76 60.5
TPR.G5965 Trifolium pratense HOM05D000113 ORTHO05D005835 6.3e-14 80.9 99 58.6
MBI09_g02133_MAGBIO Magnolia biondii HOM05D000113 ORTHO05D005835 1.4e-13 79.7 67 64.2
AL2G17920 Arabidopsis lyrata HOM05D000113 ORTHO05D005835 1.8e-13 79.3 100 50.0
Sp2g05550 Schrenkiella parvula HOM05D000113 ORTHO05D005835 1.8e-13 79.3 101 48.5
Carub.0002s0658 Capsella rubella HOM05D000113 ORTHO05D005835 3.1e-13 78.6 98 49.0
Cc02_g23020 Coffea canephora HOM05D000113 ORTHO05D005835 4.1e-13 78.2 66 60.6
Sc07g0004580 Simmondsia chinensis HOM05D000113 ORTHO05D005835 4.1e-13 78.2 101 56.4
unitig_26.g9027 Utricularia gibba HOM05D000113 ORTHO05D005835 7.0e-13 77.4 97 47.4
VMungo1215G2435 Vigna mungo HOM05D000113 ORTHO05D005835 1.2e-12 76.6 77 57.1
arahy.Tifrunner.gnm1.ann1.NM6SG7 Arachis hypogaea HOM05D000113 ORTHO05D005835 2.6e-12 75.5 105 52.4
Gohir.A01G182800 Gossypium hirsutum HOM05D000113 ORTHO05D005835 1.0e-11 73.6 109 57.8
HPP92_005700 Vanilla planifolia HOM05D000113 ORTHO05D005835 1.3e-11 73.2 106 44.3
Nitab4.5_0002596g0100 Nicotiana tabacum HOM05D000113 ORTHO05D005835 2.2e-11 72.4 59 62.7
HPP92_005690 Vanilla planifolia HOM05D000113 ORTHO05D005835 2.2e-11 72.4 106 44.3
Lj5C262G4 Lonicera japonica HOM05D003925 ORTHO05D005835 2.9e-11 72.0 60 63.3
ATR0626G234 Amborella trichopoda HOM05D000113 ORTHO05D005835 5.0e-11 71.2 105 42.9
AT1G58050 Arabidopsis thaliana HOM05D000113 ORTHO05D005835 8.5e-11 70.5 100 46.0
Aqoxy6G00123 Aquilegia oxysepala HOM05D000113 ORTHO05D005835 3.2e-10 68.6 68 54.4
SEGI_10903 Sequoiadendron giganteum HOM05D000113 ORTHO05D005835 5.2e-08 61.2 105 40.0


User provided reference genes

Program Settings