Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc30.4 Carica papaya HOM05D003697 ORTHO05D005452 7.2e-300 1033.1 513 100.0
Haze_01738 Corylus avellana HOM05D003697 ORTHO05D005452 1.0e-168 597.4 542 58.7
Cfa005504 Carpinus fangiana HOM05D003697 ORTHO05D005452 1.2e-166 590.5 542 57.9
Duzib248G1637 Durio zibethinus HOM05D003697 ORTHO05D005452 3.6e-166 589.0 538 59.3
Potri.003G018900 Populus trichocarpa HOM05D003697 ORTHO05D005452 4.7e-166 588.6 535 58.1
Sabra03G0010400 Salix brachista HOM05D003697 ORTHO05D005452 2.3e-165 586.3 560 56.4
Thecc.02G088500 Theobroma cacao HOM05D003697 ORTHO05D005452 5.2e-165 585.1 538 58.6
COL.COLO4_11778 Corchorus olitorius HOM05D003697 ORTHO05D005452 1.2e-164 583.9 537 57.7
Atru.chr3.1599 Acer truncatum HOM05D003697 ORTHO05D005452 2.6e-164 582.8 543 57.5
Atru.chr3.1607 Acer truncatum HOM05D003697 ORTHO05D005452 2.6e-164 582.8 543 57.5
QL02p099301 Quercus lobata HOM05D003697 ORTHO05D005452 7.5e-164 581.3 545 56.7
GSVIVG01022867001 Vitis vinifera HOM05D003697 ORTHO05D005452 1.3e-163 580.5 536 58.2
Ciclev10000024m.g Citrus clementina HOM05D003697 ORTHO05D005452 1.7e-163 580.1 543 58.0
Dinv19381 Davidia involucrata HOM05D003697 ORTHO05D005452 1.7e-163 580.1 486 62.8
Hma1.2p1_0217F.1_g092200 Hydrangea macrophylla HOM05D003697 ORTHO05D005452 5.1e-160 568.5 533 56.8
Gorai.008G028000 Gossypium raimondii HOM05D003697 ORTHO05D005452 6.6e-160 568.2 538 57.1
MD15G1427500 Malus domestica HOM05D003697 ORTHO05D005452 1.9e-159 566.6 531 57.8
TWI14G0038 Tripterygium wilfordii HOM05D003697 ORTHO05D005452 1.9e-159 566.6 537 56.6
vmacro19883 Vaccinium macrocarpon HOM05D003697 ORTHO05D005452 1.9e-159 566.6 520 57.3
Gohir.A12G027900 Gossypium hirsutum HOM05D003697 ORTHO05D005452 9.5e-159 564.3 538 56.9
Prupe.1G572000 Prunus persica HOM05D003697 ORTHO05D005452 9.5e-159 564.3 531 57.8
Dinv24296 Davidia involucrata HOM05D003697 ORTHO05D005452 1.2e-158 563.9 545 56.3
Gohir.D04G163800 Gossypium hirsutum HOM05D003697 ORTHO05D005452 1.1e-157 560.8 536 56.5
Gohir.A04G121300 Gossypium hirsutum HOM05D003697 ORTHO05D005452 1.4e-157 560.5 536 56.5
MD08G1235900 Malus domestica HOM05D003697 ORTHO05D005452 1.2e-156 557.4 531 55.9
CANSAT11G1101 Cannabis sativa HOM05D003697 ORTHO05D005452 1.5e-156 557.0 536 55.8
Gorai.012G151700 Gossypium raimondii HOM05D003697 ORTHO05D005452 2.0e-156 556.6 536 56.3
RcHm_v2.0_Chr7g0221551 Rosa chinensis HOM05D003697 ORTHO05D005452 8.4e-155 551.2 528 57.0
FvH4_5g28990 Fragaria vesca HOM05D003697 ORTHO05D005452 1.9e-154 550.1 528 56.2
CiPaw.06G146300 Carya illinoinensis HOM05D003697 ORTHO05D005452 3.2e-154 549.3 544 55.0
FAN08G0197 Fragaria x ananassa HOM05D003697 ORTHO05D005452 4.1e-154 548.9 528 56.1
Oeu027795.2 Olea europaea HOM05D003697 ORTHO05D005452 5.4e-154 548.5 548 53.8
FAN04G3000 Fragaria x ananassa HOM05D003697 ORTHO05D005452 3.5e-153 545.8 534 56.0
PGR142G1992 Punica granatum HOM05D003697 ORTHO05D005452 1.0e-152 544.3 535 54.8
Thhalv10018004m.g Eutrema salsugineum HOM05D003697 ORTHO05D005452 3.0e-152 542.7 535 54.2
Carub.0002s1810 Capsella rubella HOM05D003697 ORTHO05D005452 6.6e-152 541.6 535 54.8
Actinidia26154 Actinidia chinensis HOM05D003697 ORTHO05D005452 8.6e-152 541.2 542 53.3
Manes.10G121900 Manihot esculenta HOM05D003697 ORTHO05D005452 7.3e-151 538.1 537 54.9
TAR381G0967 Trochodendron aralioides HOM05D003697 ORTHO05D005452 1.2e-150 537.3 539 54.9
BcaC08g46557 Brassica carinata HOM05D003697 ORTHO05D005452 1.6e-150 537.0 538 54.1
A07p37570 Brassica napus HOM05D003697 ORTHO05D005452 2.8e-150 536.2 538 53.7
Eucgr.I02739 Eucalyptus grandis HOM05D003697 ORTHO05D005452 2.8e-150 536.2 535 55.1
CARHR064520 Cardamine hirsuta HOM05D003697 ORTHO05D005452 6.2e-150 535.0 538 53.9
DCAR_006698 Daucus carota HOM05D003697 ORTHO05D005452 1.1e-149 534.3 543 52.9
Aa31LG4G9290 Aethionema arabicum HOM05D003697 ORTHO05D005452 1.8e-149 533.5 532 54.1
CSS0042528 Camellia sinensis var. sinensis HOM05D003697 ORTHO05D005452 1.8e-149 533.5 527 55.6
Migut.B00820 Erythranthe guttata HOM05D003697 ORTHO05D005452 4.0e-149 532.3 540 53.5
Sp5g26380 Schrenkiella parvula HOM05D003697 ORTHO05D005452 1.5e-148 530.4 538 53.0
AL2G30830 Arabidopsis lyrata HOM05D003697 ORTHO05D005452 2.0e-148 530.0 538 53.9
Sopen01g046450 Solanum pennellii HOM05D003697 ORTHO05D005452 5.8e-148 528.5 543 51.7
AT1G71220 Arabidopsis thaliana HOM05D003697 ORTHO05D005452 7.6e-148 528.1 538 53.3
Rhsim05G0119800 Rhododendron simsii HOM05D003697 ORTHO05D005452 7.6e-148 528.1 602 49.7
MSTRG.20304 Avicennia marina HOM05D003697 ORTHO05D005452 2.9e-147 526.2 540 52.4
SalBow7G4621 Salvia bowleyana HOM05D003697 ORTHO05D005452 4.9e-147 525.4 551 53.2
C06p45330 Brassica napus HOM05D003697 ORTHO05D005452 8.4e-147 524.6 533 53.8
Solyc01g104040.4 Solanum lycopersicum HOM05D003697 ORTHO05D005452 8.4e-147 524.6 542 51.5
BolC6t39589H Brassica oleracea HOM05D003697 ORTHO05D005452 1.1e-146 524.2 533 54.0
Nitab4.5_0008466g0010 Nicotiana tabacum HOM05D003697 ORTHO05D005452 1.1e-146 524.2 530 53.6
BraA07t31318Z Brassica rapa HOM05D003697 ORTHO05D005452 2.4e-146 523.1 533 53.8
THA.LOC104801984 Tarenaya hassleriana HOM05D003697 ORTHO05D005452 3.2e-146 522.7 540 53.1
Lj6g0024422 Lotus japonicus HOM05D003697 ORTHO05D005452 4.2e-146 522.3 533 53.1
Nitab4.5_0000816g0140 Nicotiana tabacum HOM05D003697 ORTHO05D005452 5.4e-146 521.9 530 53.4
SGA_v2.0_scaffold110G31335 Striga asiatica HOM05D003697 ORTHO05D005452 9.3e-146 521.2 546 52.2
Glyma.08G187500 Glycine max HOM05D003697 ORTHO05D005452 7.8e-145 518.1 533 52.7
Lsat_1_v5_gn_9_118481 Lactuca sativa HOM05D003697 ORTHO05D005452 3.0e-144 516.2 536 51.1
ECA240G1790 Erigeron canadensis HOM05D003697 ORTHO05D005452 5.6e-143 511.9 538 51.7
HanXRQChr09g0249001 Helianthus annuus HOM05D003697 ORTHO05D005452 2.1e-142 510.0 538 51.7
MELO3C019456.2 Cucumis melo HOM05D003697 ORTHO05D005452 1.1e-141 507.7 530 51.3
Phvul.006G215600 Phaseolus vulgaris HOM05D003697 ORTHO05D005452 2.4e-141 506.5 529 52.4
Sc02g0002740 Simmondsia chinensis HOM05D003697 ORTHO05D005452 2.4e-141 506.5 534 51.7
Aqoxy5G02635 Aquilegia oxysepala HOM05D003697 ORTHO05D005452 3.1e-141 506.1 544 49.8
TPR.G2085 Trifolium pratense HOM05D003697 ORTHO05D005452 4.0e-141 505.8 533 52.5
EL10Ac4g08781 Beta vulgaris HOM05D003697 ORTHO05D005452 6.9e-141 505.0 522 52.5
Glyma.05G168600 Glycine max HOM05D003697 ORTHO05D005452 9.0e-141 504.6 529 52.2
Sed0005890 Sechium edule HOM05D003697 ORTHO05D005452 2.6e-140 503.1 530 51.3
CsaV3_3G019150 Cucumis sativus L. HOM05D003697 ORTHO05D005452 9.9e-140 501.1 530 50.8
FAN18G2119 Fragaria x ananassa HOM05D003697 ORTHO05D005452 1.3e-139 500.7 523 53.3
Medtr2g006960 Medicago truncatula HOM05D003697 ORTHO05D005452 6.4e-139 498.4 533 51.4
Glyma.08G127200 Glycine max HOM05D003697 ORTHO05D005452 2.4e-138 496.5 529 51.2
Lalb_Chr13g0295701 Lupinus albus HOM05D003697 ORTHO05D005452 7.9e-137 491.5 532 51.3
Peaxi162Scf00011g00526 Petunia axillaris HOM05D003697 ORTHO05D005452 1.1e-135 487.6 510 51.8
FAN13G2190 Fragaria x ananassa HOM05D003697 ORTHO05D005452 3.3e-135 486.1 661 44.8
Nn1g08409 Nelumbo nucifera HOM05D003697 ORTHO05D005452 4.8e-134 482.3 546 50.2
PSO170G2453 Papaver somniferum HOM05D003697 ORTHO05D005452 5.3e-133 478.8 534 49.1
BcaB03g14881 Brassica carinata HOM05D003697 ORTHO05D005452 2.0e-132 476.9 515 51.5
PSO017G4515 Papaver somniferum HOM05D003697 ORTHO05D005452 2.6e-132 476.5 534 49.1
BcaB03g14879 Brassica carinata HOM05D003697 ORTHO05D005452 4.5e-132 475.7 539 49.4
Ca_00071_v3 Cicer arietinum L. HOM05D003697 ORTHO05D005452 3.8e-131 472.6 547 48.8
AUR62042597 Chenopodium quinoa HOM05D003697 ORTHO05D005452 1.6e-129 467.2 500 51.2
arahy.Tifrunner.gnm1.ann1.IR21Q7 Arachis hypogaea HOM05D003697 ORTHO05D005452 1.3e-128 464.2 498 52.0
arahy.Tifrunner.gnm1.ann1.6LDV6M Arachis hypogaea HOM05D003697 ORTHO05D005452 6.7e-128 461.8 498 51.4
Hma1.2p1_0217F.1_g092210 Hydrangea macrophylla HOM05D003697 ORTHO05D005452 1.1e-127 461.1 356 66.0
VMungo0540G0442 Vigna mungo HOM05D003697 ORTHO05D005452 5.6e-127 458.8 495 51.7
ATR1136G197 Amborella trichopoda HOM05D003697 ORTHO05D005452 4.9e-123 445.7 547 46.1
Lj5C253T9 Lonicera japonica HOM05D003697 ORTHO05D005452 7.1e-122 441.8 368 61.7
CAN.G798.12 Capsicum annuum HOM05D003697 ORTHO05D005452 3.9e-120 436.0 722 38.4
CDE06G0802 Ceratophyllum demersum HOM05D003697 ORTHO05D005452 3.1e-117 426.4 539 46.8
AUR62037329 Chenopodium quinoa HOM05D003697 ORTHO05D005452 5.9e-116 422.2 533 46.2
HPP92_015204 Vanilla planifolia HOM05D003697 ORTHO05D005452 2.9e-115 419.9 536 44.4
ClCG05G009570 Citrullus lanatus HOM05D003697 ORTHO05D005452 1.1e-114 417.9 460 49.8
Cc02_g22700 Coffea canephora HOM05D003697 ORTHO05D005452 4.6e-113 412.5 356 60.1
SHI16668 Sapria himalayana HOM05D003697 ORTHO05D005452 2.3e-112 410.2 529 44.8
Zm00001eb258320 Zea mays HOM05D003697 ORTHO05D005452 2.3e-112 410.2 538 43.7
unitig_749.g14126 Utricularia gibba HOM05D003697 ORTHO05D005452 1.5e-108 397.5 470 48.7
SEGI_03237 Sequoiadendron giganteum HOM05D003697 ORTHO05D005452 6.5e-107 392.1 553 42.1
Mapoly0156s0022 Marchantia polymorpha HOM05D003697 ORTHO05D005452 5.0e-83 312.8 547 36.6
Ah.04g162670 Amaranthus hybridus HOM05D003697 ORTHO05D005452 2.7e-81 307.0 502 40.0
Pp3c3_14060 Physcomitrium patens HOM05D003697 ORTHO05D005452 7.0e-77 292.4 575 33.7
Psat7g198520 Pisum sativum HOM05D003697 ORTHO05D005452 5.5e-74 282.7 347 47.3
SMO276G0030 Selaginella moellendorffii HOM05D003697 ORTHO05D005452 1.6e-73 281.2 567 34.0
Psat7g199600 Pisum sativum HOM05D003697 ORTHO05D023078 4.7e-73 279.6 305 50.5
AagrBONN_evm.TU.Sc2ySwM_362.2359 Anthoceros agrestis HOM05D003697 ORTHO05D005452 6.8e-72 275.8 538 34.4
C06p46180 Brassica napus HOM05D003697 ORTHO05D033244 1.3e-54 218.4 152 74.3
C06p46230 Brassica napus HOM05D003697 ORTHO05D033244 1.3e-54 218.4 152 74.3
Psat5g083120 Pisum sativum HOM05D003697 ORTHO05D002190 1.9e-50 204.5 168 61.3
CBR_g48619 Chara braunii HOM05D003697 ORTHO05D005452 1.5e-47 194.9 591 27.2
Psat1g220520 Pisum sativum HOM05D003697 ORTHO05D005452 6.4e-46 189.5 280 42.5
Lj5A253T35 Lonicera japonica HOM05D003697 ORTHO05D005452 6.0e-36 156.4 105 68.6
Gohir.D12G027532 Gossypium hirsutum HOM05D003697 ORTHO05D005452 3.0e-35 154.1 91 75.8
Psat5g201760 Pisum sativum HOM05D003697 ORTHO05D023078 5.1e-35 153.3 160 48.1
Psat0s5727g0040 Pisum sativum HOM05D003697 ORTHO05D033244 6.2e-33 146.4 115 60.0
Lalb_Chr20g0123551 Lupinus albus HOM05D003697 ORTHO05D005452 8.1e-33 146.0 98 71.4
Os02g0664100 Oryza sativa ssp. japonica HOM05D003697 ORTHO05D005452 1.4e-32 145.2 92 68.5
ECA233G0288 Erigeron canadensis HOM05D003697 ORTHO05D005452 8.9e-32 142.5 99 64.6
Psat1g065720 Pisum sativum HOM05D003697 ORTHO05D002190 2.0e-31 141.4 123 56.9
Cc02_g22690 Coffea canephora HOM05D003697 ORTHO05D005452 1.3e-30 138.7 85 71.8
Psat5g078760 Pisum sativum HOM05D002636 ORTHO05D003490 6.0e-28 129.8 114 52.6
Actinidia06459 Actinidia chinensis HOM05D003697 ORTHO05D003490 2.3e-27 127.9 116 52.6
Psat4g083840 Pisum sativum HOM05D003697 ORTHO05D014541 6.6e-27 126.3 120 57.5
Psat1g055240 Pisum sativum HOM05D003697 ORTHO05D023078 1.9e-26 124.8 237 35.0
Psat7g198480 Pisum sativum HOM05D003697 ORTHO05D005452 2.1e-25 121.3 82 69.5
Psat0s625g0080 Pisum sativum HOM05D001068 ORTHO05D002190 2.2e-22 111.3 115 52.2
ClCG05G009590 Citrullus lanatus HOM05D003697 ORTHO05D005452 9.6e-18 95.9 71 63.4
CSS0037322 Camellia sinensis var. sinensis HOM05D003697 ORTHO05D014541 4.5e-15 87.0 62 71.0
CSS0047095 Camellia sinensis var. sinensis HOM05D003697 ORTHO05D014541 4.5e-15 87.0 62 71.0
CSS0043236 Camellia sinensis var. sinensis HOM05D003697 ORTHO05D014541 9.9e-15 85.9 62 69.4
CSS0007988 Camellia sinensis var. sinensis HOM05D003697 ORTHO05D014541 1.3e-14 85.5 62 69.4
CSS0037751 Camellia sinensis var. sinensis HOM05D003697 ORTHO05D014541 1.7e-14 85.1 62 69.4
CSS0031021 Camellia sinensis var. sinensis HOM05D003697 ORTHO05D014541 2.2e-14 84.7 62 67.7
CSS0010224 Camellia sinensis var. sinensis HOM05D003697 ORTHO05D014541 3.8e-14 84.0 62 69.4
CSS0032709 Camellia sinensis var. sinensis HOM05D003697 ORTHO05D014541 3.8e-14 84.0 62 69.4
CSS0045184 Camellia sinensis var. sinensis HOM05D003697 ORTHO05D014541 1.1e-13 82.4 62 67.7
TPR.G34678 Trifolium pratense HOM05D003697 ORTHO05D014541 6.7e-11 73.2 79 55.7
Psat0s1308g0040 Pisum sativum HOM05D002636 ORTHO05D004459 3.7e-09 67.4 44 65.9
Psat5g250280 Pisum sativum HOM05D003776 ORTHO05D004459 6.9e-08 63.2 51 56.9


User provided reference genes

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