Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc30.30 Carica papaya HOM05D000113 ORTHO05D015521 4.9e-28 127.1 65 100.0
TAR381G0519 Trochodendron aralioides HOM05D000113 ORTHO05D005835 4.5e-21 104.0 65 78.5
Cfa004507 Carpinus fangiana HOM05D003925 ORTHO05D005835 7.6e-21 103.2 63 82.5
AT1G58050 Arabidopsis thaliana HOM05D000113 ORTHO05D005835 1.3e-20 102.4 61 83.6
Duzib052G0463 Durio zibethinus HOM05D000113 ORTHO05D005835 1.3e-20 102.4 65 80.0
Haze_10062 Corylus avellana HOM05D000113 ORTHO05D005835 2.2e-20 101.7 65 81.5
COL.COLO4_17738 Corchorus olitorius HOM05D000113 ORTHO05D005835 3.8e-20 100.9 65 75.4
Prupe.1G577400 Prunus persica HOM05D000113 ORTHO05D005835 4.9e-20 100.5 65 73.8
Sp2g05520 Schrenkiella parvula HOM05D000113 ORTHO05D005835 4.9e-20 100.5 61 82.0
AL2G17920 Arabidopsis lyrata HOM05D000113 ORTHO05D005835 6.5e-20 100.1 61 80.3
Gohir.A01G182800 Gossypium hirsutum HOM05D000113 ORTHO05D005835 6.5e-20 100.1 65 78.5
Gohir.D01G173900 Gossypium hirsutum HOM05D000113 ORTHO05D005835 6.5e-20 100.1 65 78.5
Gorai.002G216000 Gossypium raimondii HOM05D000113 ORTHO05D005835 6.5e-20 100.1 65 78.5
MD15G1433900 Malus domestica HOM05D000113 ORTHO05D005835 6.5e-20 100.1 65 72.3
CARHR054040 Cardamine hirsuta HOM05D000113 ORTHO05D005835 8.4e-20 99.8 61 80.3
FvH4_5g21580 Fragaria vesca HOM05D000113 ORTHO05D005835 8.4e-20 99.8 63 74.6
FAN04G1601 Fragaria x ananassa HOM05D000113 ORTHO05D005835 8.4e-20 99.8 63 74.6
FAN18G0136 Fragaria x ananassa HOM05D000113 ORTHO05D005835 8.4e-20 99.8 63 74.6
RcHm_v2.0_Chr7g0209021 Rosa chinensis HOM05D000113 ORTHO05D005835 8.4e-20 99.8 63 74.6
AT1G58060 Arabidopsis thaliana HOM05D000113 ORTHO05D005835 1.1e-19 99.4 61 80.3
Carub.0002s0657 Capsella rubella HOM05D000113 ORTHO05D005835 1.1e-19 99.4 61 80.3
Thhalv10023215m.g Eutrema salsugineum HOM05D000113 ORTHO05D005835 1.4e-19 99.0 61 80.3
BcaB07g31161 Brassica carinata HOM05D000113 ORTHO05D005835 1.9e-19 98.6 61 80.3
C09p23220 Brassica napus HOM05D000113 ORTHO05D005835 1.9e-19 98.6 61 80.3
BolC9t55241H Brassica oleracea HOM05D000113 ORTHO05D005835 1.9e-19 98.6 61 80.3
THA.LOC104820242 Tarenaya hassleriana HOM05D000113 ORTHO05D005835 2.5e-19 98.2 61 80.3
Carub.0002s0658 Capsella rubella HOM05D000113 ORTHO05D005835 3.2e-19 97.8 60 81.7
FAN08G0819 Fragaria x ananassa HOM05D000113 ORTHO05D005835 4.2e-19 97.4 63 73.0
Thecc.02G023600 Theobroma cacao HOM05D000113 ORTHO05D005835 5.5e-19 97.1 62 77.4
Atru.chr6.769 Acer truncatum HOM05D000113 ORTHO05D005835 7.1e-19 96.7 64 76.6
A09p18610 Brassica napus HOM05D000113 ORTHO05D005835 9.3e-19 96.3 61 78.7
CSS0005911 Camellia sinensis var. sinensis HOM05D000113 ORTHO05D005835 9.3e-19 96.3 65 72.3
TWI59G0289 Tripterygium wilfordii HOM05D000113 ORTHO05D005835 9.3e-19 96.3 61 80.3
Actinidia39011 Actinidia chinensis HOM05D000113 ORTHO05D005835 1.2e-18 95.9 65 75.4
MSTRG.16496 Avicennia marina HOM05D000113 ORTHO05D005835 1.2e-18 95.9 65 67.7
GSVIVG01023271001 Vitis vinifera HOM05D000113 ORTHO05D005835 1.2e-18 95.9 65 72.3
AL2G17950 Arabidopsis lyrata HOM05D000113 ORTHO05D005835 1.6e-18 95.5 61 77.0
Lj2g0019885 Lotus japonicus HOM05D000113 ORTHO05D005835 1.6e-18 95.5 65 70.8
Sp2g05550 Schrenkiella parvula HOM05D000113 ORTHO05D005835 2.1e-18 95.1 60 80.0
DCAR_029273 Daucus carota HOM05D000113 ORTHO05D005835 2.7e-18 94.7 65 75.4
ECA240G0867 Erigeron canadensis HOM05D000113 ORTHO05D005835 2.7e-18 94.7 62 74.2
Lalb_Chr13g0304501 Lupinus albus HOM05D000113 ORTHO05D005835 2.7e-18 94.7 65 69.2
BolC4t24102H Brassica oleracea HOM05D000113 ORTHO05D015521 3.5e-18 94.4 60 78.3
Ciclev10000030m.g Citrus clementina HOM05D000113 ORTHO05D005835 3.5e-18 94.4 64 73.4
Manes.10G119700 Manihot esculenta HOM05D000113 ORTHO05D005835 3.5e-18 94.4 62 72.6
CiPaw.06G173200 Carya illinoinensis HOM05D000113 ORTHO05D005835 4.6e-18 94.0 65 73.8
Ca_13538_v3 Cicer arietinum L. HOM05D000113 ORTHO05D005835 4.6e-18 94.0 65 69.2
Migut.B00785 Erythranthe guttata HOM05D000113 ORTHO05D005835 4.6e-18 94.0 65 67.7
Medtr4g134790 Medicago truncatula HOM05D000113 ORTHO05D005835 4.6e-18 94.0 65 67.7
TPR.G5965 Trifolium pratense HOM05D000113 ORTHO05D005835 4.6e-18 94.0 65 67.7
ATR0626G246 Amborella trichopoda HOM05D000113 ORTHO05D005835 6.0e-18 93.6 62 75.8
Aqoxy6G00123 Aquilegia oxysepala HOM05D000113 ORTHO05D005835 7.9e-18 93.2 65 73.8
A03p66390 Brassica napus HOM05D000113 ORTHO05D015521 7.9e-18 93.2 60 76.7
BraA03t15695Z Brassica rapa HOM05D000113 ORTHO05D015521 7.9e-18 93.2 60 76.7
BraA09t37485Z Brassica rapa HOM05D000113 ORTHO05D005835 7.9e-18 93.2 61 77.0
HanXRQChr03g0065101 Helianthus annuus HOM05D000113 ORTHO05D005835 7.9e-18 93.2 65 70.8
Psat4g000920 Pisum sativum HOM05D000113 ORTHO05D005835 1.8e-17 92.0 65 66.2
Rhsim11G0124400 Rhododendron simsii HOM05D000113 ORTHO05D015521 1.8e-17 92.0 65 70.8
Thhalv10023216m.g Eutrema salsugineum HOM05D000113 ORTHO05D005835 2.3e-17 91.7 60 75.0
Oeu058638.1 Olea europaea HOM05D000113 ORTHO05D005835 2.3e-17 91.7 65 66.2
CANSAT54G2975 Cannabis sativa HOM05D000113 ORTHO05D005835 3.0e-17 91.3 63 68.3
Sabra01G0168800 Salix brachista HOM05D000113 ORTHO05D005835 3.0e-17 91.3 62 71.0
Sed0015728 Sechium edule HOM05D000113 ORTHO05D005835 3.0e-17 91.3 62 74.2
ClCG05G009410 Citrullus lanatus HOM05D000113 ORTHO05D005835 6.7e-17 90.1 62 72.6
Lsat_1_v5_gn_9_120661 Lactuca sativa HOM05D000113 ORTHO05D005835 6.7e-17 90.1 62 71.0
BcaC06g31782 Brassica carinata HOM05D003037 ORTHO05D005835 8.7e-17 89.7 58 77.6
MELO3C019423.2 Cucumis melo HOM05D000113 ORTHO05D005835 8.7e-17 89.7 62 72.6
CsaV3_3G019320 Cucumis sativus L. HOM05D000113 ORTHO05D005835 8.7e-17 89.7 62 72.6
Glyma.17G001100 Glycine max HOM05D000113 ORTHO05D005835 8.7e-17 89.7 62 69.4
Ah.02g128270 Amaranthus hybridus HOM05D000113 ORTHO05D005835 1.1e-16 89.4 61 72.1
Potri.004G222900 Populus trichocarpa HOM05D000113 ORTHO05D005835 1.5e-16 89.0 62 69.4
Solyc01g103690.4 Solanum lycopersicum HOM05D000113 ORTHO05D005835 1.9e-16 88.6 64 70.3
Phvul.003G075000 Phaseolus vulgaris HOM05D000113 ORTHO05D005835 3.3e-16 87.8 59 72.9
HPP92_005700 Vanilla planifolia HOM05D000113 ORTHO05D005835 3.3e-16 87.8 60 71.7
Sc07g0004580 Simmondsia chinensis HOM05D000113 ORTHO05D005835 5.7e-16 87.0 61 70.5
Os04g0432200 Oryza sativa ssp. japonica HOM05D000113 ORTHO05D015521 7.4e-16 86.7 61 68.9
Sopen01g046100 Solanum pennellii HOM05D000113 ORTHO05D005835 7.4e-16 86.7 64 68.8
arahy.Tifrunner.gnm1.ann1.F0MMCG Arachis hypogaea HOM05D000113 ORTHO05D005835 1.3e-15 85.9 62 66.1
CAN.G798.54 Capsicum annuum HOM05D000113 ORTHO05D005835 3.7e-15 84.3 60 68.3
CDE04G3208 Ceratophyllum demersum HOM05D000113 ORTHO05D015521 4.8e-15 84.0 62 61.3
Peaxi162Scf00011g00940 Petunia axillaris HOM05D000113 ORTHO05D005835 1.1e-14 82.8 60 68.3
PGR042G0228 Punica granatum HOM05D000113 ORTHO05D005835 5.3e-14 80.5 62 66.1
Lj5C262G4 Lonicera japonica HOM05D003925 ORTHO05D005835 1.5e-13 79.0 50 76.0
CSS0010677 Camellia sinensis var. sinensis HOM05D000113 ORTHO05D005835 3.4e-13 77.8 49 73.5
Cc02_g23020 Coffea canephora HOM05D000113 ORTHO05D005835 1.0e-12 76.3 65 56.9
Eucgr.G00345 Eucalyptus grandis HOM05D000113 ORTHO05D005835 1.3e-12 75.9 62 61.3
arahy.Tifrunner.gnm1.ann1.NM6SG7 Arachis hypogaea HOM05D000113 ORTHO05D005835 1.7e-12 75.5 58 62.1
Dinv07476 Davidia involucrata HOM05D003925 ORTHO05D005835 8.4e-12 73.2 50 76.0
EL10Ac6g14137 Beta vulgaris HOM05D000113 ORTHO05D005835 2.7e-10 68.2 41 75.6
Pp3c26_14400 Physcomitrium patens HOM05D000113 ORTHO05D005835 3.5e-10 67.8 62 56.5
Aa31LG2G11010 Aethionema arabicum HOM05D000113 ORTHO05D005835 4.6e-10 67.4 39 84.6
Nn5g27790 Nelumbo nucifera HOM05D000113 ORTHO05D005835 1.0e-09 66.2 57 59.6
CBR_g34282 Chara braunii HOM05D000113 ORTHO05D005835 5.1e-09 63.9 64 51.6
VMungo1215G3020 Vigna mungo HOM05D000002 ORTHO05D000001 8.7e-09 63.2 38 81.6
AUR62040619 Chenopodium quinoa HOM05D000113 ORTHO05D005835 1.5e-08 62.4 39 74.4
Mapoly0048s0072 Marchantia polymorpha HOM05D000113 ORTHO05D005835 1.9e-08 62.0 63 49.2
Nitab4.5_0000948g0070 Nicotiana tabacum HOM05D000113 ORTHO05D015521 1.9e-08 62.0 38 78.9
QL02p100213 Quercus lobata HOM05D000113 ORTHO05D005835 2.5e-08 61.6 39 79.5
Nitab4.5_0002596g0100 Nicotiana tabacum HOM05D000113 ORTHO05D005835 3.3e-08 61.2 63 58.7
vmacro01724 Vaccinium macrocarpon HOM05D000113 ORTHO05D005835 7.4e-08 60.1 40 72.5
AagrBONN_evm.TU.Sc2ySwM_344.5572 Anthoceros agrestis HOM05D000113 ORTHO05D005835 1.3e-07 59.3 62 50.0
Zm00001eb082690 Zea mays HOM05D000113 ORTHO05D005835 4.8e-07 57.4 39 66.7
SMO164G0084 Selaginella moellendorffii HOM05D000113 ORTHO05D005835 9.0e-06 53.1 56 46.4


User provided reference genes

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