Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc30.159 Carica papaya HOM05D005021 ORTHO05D006824 0.0e+00 2766.5 1399 100.0
Potri.012G124400 Populus trichocarpa HOM05D005021 ORTHO05D006824 0.0e+00 2421.4 1401 86.8
Sabra12G0094200 Salix brachista HOM05D005021 ORTHO05D006824 0.0e+00 2413.3 1401 86.5
Thecc.02G008800 Theobroma cacao HOM05D005021 ORTHO05D006824 0.0e+00 2400.5 1400 86.4
COL.COLO4_17653 Corchorus olitorius HOM05D005021 ORTHO05D006824 0.0e+00 2399.8 1400 85.9
Atru.chr10.559 Acer truncatum HOM05D005021 ORTHO05D006824 0.0e+00 2398.2 1399 85.6
Ciclev10014047m.g Citrus clementina HOM05D005021 ORTHO05D006824 0.0e+00 2397.9 1399 85.6
Gorai.002G164100 Gossypium raimondii HOM05D005021 ORTHO05D006824 0.0e+00 2374.0 1400 85.2
Gohir.A01G141263 Gossypium hirsutum HOM05D005021 ORTHO05D006824 0.0e+00 2372.4 1400 85.1
QL11p016313 Quercus lobata HOM05D005021 ORTHO05D006824 0.0e+00 2362.4 1399 84.6
Gohir.D01G132500 Gossypium hirsutum HOM05D005021 ORTHO05D006824 0.0e+00 2362.0 1400 84.9
Prupe.4G113100 Prunus persica HOM05D005021 ORTHO05D006824 0.0e+00 2359.3 1400 84.3
Cfa000703 Carpinus fangiana HOM05D005021 ORTHO05D006824 0.0e+00 2358.9 1400 84.2
RcHm_v2.0_Chr5g0020301 Rosa chinensis HOM05D005021 ORTHO05D006824 0.0e+00 2353.6 1399 84.1
TWI38G0776 Tripterygium wilfordii HOM05D005021 ORTHO05D006824 0.0e+00 2352.4 1400 84.4
TWI38G0923 Tripterygium wilfordii HOM05D005021 ORTHO05D006824 0.0e+00 2351.6 1400 84.2
CiPaw.10G064100 Carya illinoinensis HOM05D005021 ORTHO05D006824 0.0e+00 2343.2 1399 83.7
Dinv25918 Davidia involucrata HOM05D005021 ORTHO05D006824 0.0e+00 2342.4 1400 84.1
Eucgr.D00052 Eucalyptus grandis HOM05D005021 ORTHO05D006824 0.0e+00 2342.4 1399 83.5
GSVIVG01012103001 Vitis vinifera HOM05D005021 ORTHO05D006824 0.0e+00 2330.4 1405 83.0
CANSAT35G0082 Cannabis sativa HOM05D005021 ORTHO05D006824 0.0e+00 2326.2 1400 83.1
FvH4_3g12410 Fragaria vesca HOM05D005021 ORTHO05D006824 0.0e+00 2325.1 1400 83.4
MD10G1231300 Malus domestica HOM05D005021 ORTHO05D006824 0.0e+00 2322.0 1400 83.4
CSS0004737 Camellia sinensis var. sinensis HOM05D005021 ORTHO05D006824 0.0e+00 2317.0 1401 83.3
Duzib248G0067 Durio zibethinus HOM05D005021 ORTHO05D006824 0.0e+00 2308.9 1356 85.2
TAR626G1325 Trochodendron aralioides HOM05D005021 ORTHO05D006824 0.0e+00 2290.8 1399 81.8
Glyma.20G019300 Glycine max HOM05D005021 ORTHO05D006824 0.0e+00 2290.0 1402 81.3
Haze_06074 Corylus avellana HOM05D005021 ORTHO05D006824 0.0e+00 2287.3 1444 80.7
MD05G1250500 Malus domestica HOM05D005021 ORTHO05D006824 0.0e+00 2287.3 1400 82.6
Potri.015G124500 Populus trichocarpa HOM05D005021 ORTHO05D006824 0.0e+00 2281.1 1402 82.8
FAN21G1452 Fragaria x ananassa HOM05D005021 ORTHO05D006824 0.0e+00 2278.8 1400 82.1
Phvul.002G097500 Phaseolus vulgaris HOM05D005021 ORTHO05D006824 0.0e+00 2273.0 1402 81.0
ClCG01G009560 Citrullus lanatus HOM05D005021 ORTHO05D006824 0.0e+00 2272.7 1399 80.4
Lj4g0005220 Lotus japonicus HOM05D005021 ORTHO05D006824 0.0e+00 2267.7 1404 80.8
MELO3C021737.2 Cucumis melo HOM05D005021 ORTHO05D006824 0.0e+00 2262.6 1400 80.4
CsaV3_1G046230 Cucumis sativus L. HOM05D005021 ORTHO05D006824 0.0e+00 2261.9 1399 80.1
Psat7g129680 Pisum sativum HOM05D005021 ORTHO05D006824 0.0e+00 2256.1 1402 80.2
Ca_18756_v3 Cicer arietinum L. HOM05D005021 ORTHO05D006824 0.0e+00 2255.7 1402 80.1
Carub.0004s1679 Capsella rubella HOM05D005021 ORTHO05D006824 0.0e+00 2254.9 1418 80.4
Thhalv10016146m.g Eutrema salsugineum HOM05D005021 ORTHO05D006824 0.0e+00 2253.0 1417 80.4
AL4G31120 Arabidopsis lyrata HOM05D005021 ORTHO05D006824 0.0e+00 2251.5 1417 80.6
Sed0001856 Sechium edule HOM05D005021 ORTHO05D006824 0.0e+00 2248.8 1399 80.5
Solyc02g068720.3 Solanum lycopersicum HOM05D005021 ORTHO05D006824 0.0e+00 2245.3 1401 79.9
TPR.G38288 Trifolium pratense HOM05D005021 ORTHO05D006824 0.0e+00 2244.9 1402 79.7
arahy.Tifrunner.gnm1.ann1.79RC6W Arachis hypogaea HOM05D005021 ORTHO05D006824 0.0e+00 2244.2 1493 76.6
FAN25G1951 Fragaria x ananassa HOM05D005021 ORTHO05D006824 0.0e+00 2244.2 1416 80.4
Medtr4g084140 Medicago truncatula HOM05D005021 ORTHO05D006824 0.0e+00 2244.2 1404 79.7
Sopen02g017890 Solanum pennellii HOM05D005021 ORTHO05D006824 0.0e+00 2243.0 1401 79.9
Aa31LG9G16120 Aethionema arabicum HOM05D005021 ORTHO05D006824 0.0e+00 2237.6 1429 78.7
Cc09_g06010 Coffea canephora HOM05D005021 ORTHO05D006824 0.0e+00 2234.5 1401 80.6
Lalb_Chr16g0385181 Lupinus albus HOM05D005021 ORTHO05D006824 0.0e+00 2234.1 1403 79.8
Nitab4.5_0001288g0150 Nicotiana tabacum HOM05D005021 ORTHO05D006824 0.0e+00 2231.4 1400 79.9
THA.LOC104798554 Tarenaya hassleriana HOM05D005021 ORTHO05D006824 0.0e+00 2228.4 1409 79.5
A05p10630 Brassica napus HOM05D005021 ORTHO05D006824 0.0e+00 2223.7 1413 79.4
BraA05t20004Z Brassica rapa HOM05D005021 ORTHO05D006824 0.0e+00 2222.2 1414 79.3
BcaB02g09478 Brassica carinata HOM05D005021 ORTHO05D006824 0.0e+00 2218.0 1414 79.5
BolC4t22962H Brassica oleracea HOM05D005021 ORTHO05D006824 0.0e+00 2218.0 1414 79.3
C04p13730 Brassica napus HOM05D005021 ORTHO05D006824 0.0e+00 2217.2 1414 79.1
Nn7g38248 Nelumbo nucifera HOM05D005021 ORTHO05D006824 0.0e+00 2214.1 1436 78.6
Migut.M01986 Erythranthe guttata HOM05D005021 ORTHO05D006824 0.0e+00 2212.2 1405 79.2
Nitab4.5_0007745g0040 Nicotiana tabacum HOM05D005021 ORTHO05D006824 0.0e+00 2212.2 1412 78.7
CAN.G149.8 Capsicum annuum HOM05D005021 ORTHO05D006824 0.0e+00 2201.8 1413 77.8
BcaB02g09480 Brassica carinata HOM05D005021 ORTHO05D006824 0.0e+00 2201.4 1424 78.9
PGR004G0612 Punica granatum HOM05D005021 ORTHO05D006824 0.0e+00 2200.6 1390 79.9
AT2G35110 Arabidopsis thaliana HOM05D005021 ORTHO05D006824 0.0e+00 2194.5 1383 80.2
DCAR_003775 Daucus carota HOM05D005021 ORTHO05D006824 0.0e+00 2194.1 1400 79.1
arahy.Tifrunner.gnm1.ann1.59QZXR Arachis hypogaea HOM05D005021 ORTHO05D006824 0.0e+00 2180.6 1496 74.7
Oeu060353.1 Olea europaea HOM05D005021 ORTHO05D006824 0.0e+00 2172.1 1424 77.1
Manes.16G055900 Manihot esculenta HOM05D005021 ORTHO05D006824 0.0e+00 2171.0 1265 86.6
Aqoxy1G01424 Aquilegia oxysepala HOM05D005021 ORTHO05D006824 0.0e+00 2161.7 1400 77.7
HanXRQChr14g0447451 Helianthus annuus HOM05D005021 ORTHO05D006824 0.0e+00 2155.6 1399 77.8
ECA238G3003 Erigeron canadensis HOM05D005021 ORTHO05D006824 0.0e+00 2154.4 1400 78.1
SalBow8G3018 Salvia bowleyana HOM05D005021 ORTHO05D006824 0.0e+00 2149.4 1408 77.3
PSO675G8902 Papaver somniferum HOM05D005021 ORTHO05D006824 0.0e+00 2130.1 1401 76.7
Lj1A1146G59 Lonicera japonica HOM05D005021 ORTHO05D006824 0.0e+00 2097.8 1416 76.2
Hma1.2p1_1005F.1_g246940 Hydrangea macrophylla HOM05D005021 ORTHO05D006824 0.0e+00 2060.4 1235 83.2
vmacro03526 Vaccinium macrocarpon HOM05D005021 ORTHO05D006824 0.0e+00 2036.9 1709 64.5
AUR62041742 Chenopodium quinoa HOM05D005021 ORTHO05D006824 0.0e+00 2016.9 1364 75.1
Hund09140 Selenicereus undatus HOM05D005021 ORTHO05D006824 0.0e+00 2016.1 1362 75.0
AUR62037395 Chenopodium quinoa HOM05D005021 ORTHO05D006824 0.0e+00 2015.0 1366 75.0
RhsimUnG0043400 Rhododendron simsii HOM05D005021 ORTHO05D006824 0.0e+00 1986.8 1302 77.6
EL10Ac9g20953 Beta vulgaris HOM05D005021 ORTHO05D006824 0.0e+00 1966.0 1412 72.2
Sc17g0003700 Simmondsia chinensis HOM05D005021 ORTHO05D006824 0.0e+00 1917.5 1203 79.5
unitig_748.g8077 Utricularia gibba HOM05D005021 ORTHO05D006824 0.0e+00 1911.0 1342 72.4
Os08g0544500 Oryza sativa ssp. japonica HOM05D005021 ORTHO05D006824 0.0e+00 1894.0 1389 69.0
SGA_v2.0_scaffold175G39355 Striga asiatica HOM05D005021 ORTHO05D006824 0.0e+00 1885.9 1387 71.2
Zm00001eb405230 Zea mays HOM05D005021 ORTHO05D006824 0.0e+00 1835.8 1392 67.5
ATR0752G031 Amborella trichopoda HOM05D005021 ORTHO05D006824 0.0e+00 1821.2 1403 66.2
Ah.01g015830 Amaranthus hybridus HOM05D005021 ORTHO05D006824 0.0e+00 1790.4 1543 62.5
Peaxi162Scf00149g00312 Petunia axillaris HOM05D005021 ORTHO05D006824 0.0e+00 1496.5 921 80.2
CDE05G3601 Ceratophyllum demersum HOM05D005021 ORTHO05D006824 0.0e+00 1459.1 1169 63.5
Sp4g17340 Schrenkiella parvula HOM05D005021 ORTHO05D006824 0.0e+00 1440.2 833 85.6
Mapoly0087s0075 Marchantia polymorpha HOM05D005021 ORTHO05D006824 0.0e+00 1390.2 1420 51.5
Pp3c11_1080 Physcomitrium patens HOM05D005021 ORTHO05D006824 0.0e+00 1343.2 1373 50.4
Lsat_1_v5_gn_2_63641 Lactuca sativa HOM05D005021 ORTHO05D006824 0.0e+00 1342.0 989 70.6
Pp3c1_6150 Physcomitrium patens HOM05D005021 ORTHO05D006824 0.0e+00 1327.8 1376 49.1
SMO367G0195 Selaginella moellendorffii HOM05D005021 ORTHO05D006824 0.0e+00 1327.4 1355 50.8
CARHR129260 Cardamine hirsuta HOM05D005021 ORTHO05D006824 0.0e+00 1244.2 815 77.5
FAN16G3288 Fragaria x ananassa HOM05D005021 ORTHO05D006824 0.0e+00 1234.9 727 85.4
VMungo0251G0795 Vigna mungo HOM05D005021 ORTHO05D006824 0.0e+00 1201.4 761 78.8
HPP92_017169 Vanilla planifolia HOM05D005021 ORTHO05D006824 0.0e+00 1172.5 881 65.6
Actinidia33677 Actinidia chinensis HOM05D005021 ORTHO05D006824 0.0e+00 1168.7 791 74.8
VMungo0251G3115 Vigna mungo HOM05D005021 ORTHO05D006824 6.0e-288 995.0 600 82.7
AagrBONN_evm.TU.Sc2ySwM_344.1422 Anthoceros agrestis HOM05D005021 ORTHO05D006824 4.0e-276 955.7 829 56.8
Potri.015G123900 Populus trichocarpa HOM05D005021 ORTHO05D006824 6.9e-268 928.3 601 79.5
QL11p016288 Quercus lobata HOM05D005021 ORTHO05D006824 1.6e-216 757.7 516 75.2
Oeu060352.1 Olea europaea HOM05D005021 ORTHO05D006824 7.2e-209 732.3 483 77.6
SHI31491 Sapria himalayana HOM05D005021 ORTHO05D006824 7.5e-190 669.1 553 62.7
CBR_g30692 Chara braunii HOM05D005021 ORTHO05D006824 3.7e-181 640.2 1495 29.0
BcaNung06473 Brassica carinata HOM05D005021 ORTHO05D006824 1.2e-163 582.0 537 60.5
HPP92_017178 Vanilla planifolia HOM05D005021 ORTHO05D006824 4.7e-152 543.5 367 74.7
SEGI_39898 Sequoiadendron giganteum HOM05D005021 ORTHO05D006824 2.9e-133 481.1 530 50.2
Medtr4g081610 Medicago truncatula HOM05D005021 ORTHO05D006824 1.2e-123 449.1 539 50.6
Psat0s5010g0080 Pisum sativum HOM05D005021 ORTHO05D006824 1.7e-104 385.6 269 72.1
Psat0s2371g0040 Pisum sativum HOM05D000434 ORTHO05D006824 6.3e-96 357.1 215 80.5
SEGI_00319 Sequoiadendron giganteum HOM05D005021 ORTHO05D006824 2.0e-86 325.5 222 72.5
Medtr4g081600 Medicago truncatula HOM05D005021 ORTHO05D006824 1.7e-85 322.4 418 45.7
Sp2g07020 Schrenkiella parvula HOM05D005021 ORTHO05D006824 5.0e-77 294.3 299 55.5
Psat0s5010g0040 Pisum sativum HOM05D005021 ORTHO05D004273 1.7e-56 226.1 133 82.7
HPP92_017177 Vanilla planifolia HOM05D005021 ORTHO05D006824 1.6e-54 219.5 157 70.1
Potri.015G124200 Populus trichocarpa HOM05D005021 ORTHO05D006824 3.0e-45 188.7 133 75.9
SEGI_02164 Sequoiadendron giganteum HOM05D005021 ORTHO05D006824 1.2e-41 176.8 121 64.5
Oeu003620.1 Olea europaea HOM05D005021 ORTHO05D006824 1.5e-36 159.8 116 71.6
Actinidia33676 Actinidia chinensis HOM05D005021 ORTHO05D006824 6.2e-35 154.5 94 83.0
BcaB07g31175 Brassica carinata HOM05D005021 ORTHO05D006824 8.1e-35 154.1 89 77.5
SEGI_41047 Sequoiadendron giganteum HOM05D005021 ORTHO05D006824 4.0e-34 151.8 158 50.6
SHI31497 Sapria himalayana HOM05D005021 ORTHO05D006824 2.6e-33 149.1 112 68.8
QL05p044008 Quercus lobata HOM05D005021 ORTHO05D006824 1.1e-31 143.7 84 84.5
SGA_v2.0_scaffold88G27325 Striga asiatica HOM05D005021 ORTHO05D006824 7.9e-30 137.5 123 58.5
GSVIVG01004787001 Vitis vinifera HOM05D000908 ORTHO05D000789 1.1e-28 133.7 83 74.7
MBI13_g07384_MAGBIO Magnolia biondii HOM05D005021 ORTHO05D018021 2.5e-28 132.5 101 69.3
Lsat_1_v5_gn_6_73941 Lactuca sativa HOM05D005021 ORTHO05D020826 2.4e-26 125.9 151 54.3
Oeu048766.1 Olea europaea HOM05D001727 ORTHO05D001758 5.8e-25 121.3 86 69.8
Zm00001eb290420 Zea mays HOM05D005021 ORTHO05D006824 4.9e-24 118.2 98 57.1
Lsat_1_v5_gn_3_96441 Lactuca sativa HOM05D005021 ORTHO05D020826 3.2e-23 115.5 239 36.8
SHI31495 Sapria himalayana HOM05D005021 ORTHO05D006824 1.2e-22 113.6 165 40.6
HPP92_017168 Vanilla planifolia HOM05D005021 ORTHO05D006824 1.6e-19 103.2 68 76.5
Psat5g003360 Pisum sativum HOM05D005021 ORTHO05D006824 1.2e-17 97.1 88 56.8
Potri.015G123001 Populus trichocarpa HOM05D005021 ORTHO05D006824 5.8e-17 94.7 51 90.2
Oeu008861.1 Olea europaea HOM05D005021 ORTHO05D006824 3.8e-16 92.0 54 87.0
SEGI_05203 Sequoiadendron giganteum HOM05D005021 ORTHO05D006824 5.5e-15 88.2 50 88.0
Psat0s659g0040 Pisum sativum HOM05D005021 ORTHO05D023083 3.5e-14 85.5 100 49.0
SGA_v2.0_scaffold181G39736 Striga asiatica HOM05D003210 ORTHO05D000001 1.5e-12 80.1 187 33.7
Psat1g136920 Pisum sativum HOM05D005021 ORTHO05D023083 1.9e-12 79.7 50 74.0
Psat2g014320 Pisum sativum HOM05D005021 ORTHO05D023083 1.9e-12 79.7 50 74.0
Lsat_1_v5_gn_8_50200 Lactuca sativa HOM05D003846 ORTHO05D004726 2.5e-12 79.3 45 84.4
Zm00001eb404970 Zea mays HOM05D005021 ORTHO05D006824 5.7e-12 78.2 103 44.7
Lsat_1_v5_gn_2_58240 Lactuca sativa HOM05D003297 ORTHO05D020826 2.8e-11 75.9 42 88.1
Lsat_1_v5_gn_4_123441 Lactuca sativa HOM05D003846 ORTHO05D004726 1.1e-07 63.9 35 88.6
Lsat_1_v5_gn_5_125381 Lactuca sativa HOM05D003846 ORTHO05D020826 1.1e-07 63.9 35 88.6
Lsat_1_v5_gn_5_18841 Lactuca sativa HOM05D003846 ORTHO05D020826 1.1e-07 63.9 35 88.6
Lsat_1_v5_gn_5_43841 Lactuca sativa HOM05D003846 ORTHO05D020826 1.1e-07 63.9 35 88.6
Lsat_1_v5_gn_7_114520 Lactuca sativa HOM05D003846 ORTHO05D004726 1.1e-07 63.9 35 88.6
Medtr3g014450 Medicago truncatula HOM05D005021 ORTHO05D006824 1.1e-07 63.9 54 57.4
Lsat_1_v5_gn_4_70420 Lactuca sativa HOM05D003297 ORTHO05D020826 1.6e-06 60.1 34 85.3


User provided reference genes

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