Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc30.139 Carica papaya HOM05D006242 ORTHO05D007936 8.8e-165 583.6 296 100.0
Dinv10532 Davidia involucrata HOM05D006242 ORTHO05D007936 2.3e-128 462.6 294 76.2
MD10G1229500 Malus domestica HOM05D006242 ORTHO05D007936 6.6e-128 461.1 295 75.9
Manes.03G074100 Manihot esculenta HOM05D006242 ORTHO05D007936 1.1e-127 460.3 294 76.9
Duzib248G1438 Durio zibethinus HOM05D006242 ORTHO05D007936 1.8e-125 453.0 294 75.2
GSVIVG01012122001 Vitis vinifera HOM05D006242 ORTHO05D007936 2.3e-125 452.6 294 76.2
Atru.chr10.429 Acer truncatum HOM05D006242 ORTHO05D007936 3.0e-125 452.2 293 75.4
Cfa000677 Carpinus fangiana HOM05D006242 ORTHO05D007936 5.2e-125 451.4 290 75.9
Thecc.02G006000 Theobroma cacao HOM05D006242 ORTHO05D007936 8.9e-125 450.7 294 74.8
QL11p013482 Quercus lobata HOM05D006242 ORTHO05D007936 1.2e-124 450.3 290 75.9
Rhsim06G0063600 Rhododendron simsii HOM05D006242 ORTHO05D007936 2.0e-124 449.5 294 73.8
Prupe.4G115300 Prunus persica HOM05D006242 ORTHO05D007936 2.6e-124 449.1 293 73.7
TWI38G1455 Tripterygium wilfordii HOM05D006242 ORTHO05D007936 2.6e-124 449.1 297 74.4
Haze_06141 Corylus avellana HOM05D006242 ORTHO05D007936 7.5e-124 447.6 290 75.9
Potri.001G159600 Populus trichocarpa HOM05D006242 ORTHO05D007936 2.2e-123 446.0 295 75.3
Actinidia22421 Actinidia chinensis HOM05D006242 ORTHO05D007936 5.4e-122 441.4 294 72.8
Sabra01G0132400 Salix brachista HOM05D006242 ORTHO05D007936 9.2e-122 440.7 295 73.9
Gohir.D12G047300 Gossypium hirsutum HOM05D006242 ORTHO05D007936 3.9e-120 435.3 294 73.8
RcHm_v2.0_Chr5g0020621 Rosa chinensis HOM05D006242 ORTHO05D007936 5.0e-120 434.9 293 73.4
Gorai.008G050000 Gossypium raimondii HOM05D006242 ORTHO05D007936 1.1e-119 433.7 294 73.5
Gohir.A12G048500 Gossypium hirsutum HOM05D006242 ORTHO05D007936 4.3e-119 431.8 294 72.8
FvH4_3g12650 Fragaria vesca HOM05D006242 ORTHO05D007936 5.6e-119 431.4 293 72.4
FAN25G2599 Fragaria x ananassa HOM05D006242 ORTHO05D007936 1.0e-117 427.2 293 71.7
Hma1.2p1_1499F.1_g287250 Hydrangea macrophylla HOM05D006242 ORTHO05D007936 1.0e-117 427.2 294 68.7
FAN21G1956 Fragaria x ananassa HOM05D006242 ORTHO05D007936 3.1e-117 425.6 293 71.7
DCAR_007782 Daucus carota HOM05D006242 ORTHO05D007936 1.2e-116 423.7 294 69.7
CAN.G79.44 Capsicum annuum HOM05D006242 ORTHO05D007936 1.4e-114 416.8 294 66.7
HanXRQChr12g0381511 Helianthus annuus HOM05D006242 ORTHO05D007936 3.2e-114 415.6 294 69.4
MBI02_g26996_MAGBIO Magnolia biondii HOM05D006242 ORTHO05D007936 5.4e-114 414.8 289 70.2
PSO541G0450 Papaver somniferum HOM05D006242 ORTHO05D007936 9.2e-114 414.1 294 68.4
Cc00_g22870 Coffea canephora HOM05D006242 ORTHO05D007936 1.6e-113 413.3 294 68.4
Nitab4.5_0008021g0020 Nicotiana tabacum HOM05D006242 ORTHO05D007936 2.0e-113 412.9 311 65.3
Solyc02g031980.3 Solanum lycopersicum HOM05D006242 ORTHO05D007936 6.0e-113 411.4 294 66.3
PGSC0003DMG400014939 Solanum tuberosum HOM05D006242 ORTHO05D007936 6.0e-113 411.4 294 67.0
ECA232G2813 Erigeron canadensis HOM05D006242 ORTHO05D007936 3.0e-112 409.1 291 69.8
PSO675G0930 Papaver somniferum HOM05D006242 ORTHO05D007936 5.0e-112 408.3 294 67.3
Eucgr.B01565 Eucalyptus grandis HOM05D006242 ORTHO05D007936 8.6e-112 407.5 294 68.4
Oeu058943.1 Olea europaea HOM05D006242 ORTHO05D007936 8.6e-112 407.5 312 64.1
Thhalv10017018m.g Eutrema salsugineum HOM05D006242 ORTHO05D007936 7.3e-111 404.4 294 68.7
FAN16G0457 Fragaria x ananassa HOM05D006242 ORTHO05D007936 1.2e-110 403.7 320 65.0
Medtr1g050428 Medicago truncatula HOM05D006242 ORTHO05D007936 1.6e-110 403.3 289 66.8
Aa31LG9G16170 Aethionema arabicum HOM05D003281 ORTHO05D004128 6.2e-110 401.4 292 69.2
PGR004G2427 Punica granatum HOM05D006242 ORTHO05D007936 2.3e-109 399.4 290 67.9
CANSAT35G0032 Cannabis sativa HOM05D006242 ORTHO05D007936 5.2e-109 398.3 294 66.3
Ca_19722_v3 Cicer arietinum L. HOM05D006242 ORTHO05D007936 6.8e-109 397.9 293 64.2
Carub.0004s1673 Capsella rubella HOM05D006242 ORTHO05D007936 8.9e-109 397.5 294 67.3
A05p10660 Brassica napus HOM05D003281 ORTHO05D004128 1.5e-108 396.7 294 66.7
C04p13760 Brassica napus HOM05D003281 ORTHO05D004128 1.5e-108 396.7 294 66.7
BolC4t22966H Brassica oleracea HOM05D003281 ORTHO05D004128 1.5e-108 396.7 294 66.7
Lj6g0025800 Lotus japonicus HOM05D006242 ORTHO05D007936 3.4e-108 395.6 293 65.2
AL4G31060 Arabidopsis lyrata HOM05D006242 ORTHO05D007936 2.2e-107 392.9 311 63.7
EL10Ac7g16757 Beta vulgaris HOM05D006242 ORTHO05D007936 3.7e-107 392.1 294 66.7
Cc09_g05740 Coffea canephora HOM05D006242 ORTHO05D007936 4.1e-106 388.7 298 65.4
MSTRG.20044 Avicennia marina HOM05D006242 ORTHO05D007936 2.1e-105 386.3 294 65.0
Lj1A1147G28 Lonicera japonica HOM05D006242 ORTHO05D007936 2.7e-105 386.0 269 71.4
SGA_v2.0_scaffold51G18672 Striga asiatica HOM05D006242 ORTHO05D007936 3.5e-105 385.6 295 63.7
Ciclev10016161m.g Citrus clementina HOM05D006242 ORTHO05D007936 1.3e-104 383.6 290 67.2
Lalb_Chr19g0129141 Lupinus albus HOM05D006242 ORTHO05D007936 3.0e-104 382.5 294 63.6
THA.LOC104798560 Tarenaya hassleriana HOM05D006242 ORTHO05D007936 3.9e-104 382.1 362 56.6
CDE05G0364 Ceratophyllum demersum HOM05D006242 ORTHO05D007936 8.6e-104 380.9 296 63.9
Cc09_g05610 Coffea canephora HOM05D006242 ORTHO05D007936 5.6e-103 378.3 275 67.3
Sc17g0004220 Simmondsia chinensis HOM05D006242 ORTHO05D007936 9.5e-103 377.5 258 71.7
ClCG01G025640 Citrullus lanatus HOM05D006242 ORTHO05D007936 1.6e-102 376.7 289 64.0
CsaV3_6G052870 Cucumis sativus L. HOM05D006242 ORTHO05D007936 3.1e-101 372.5 290 63.8
Peaxi162Scf00198g01026 Petunia axillaris HOM05D006242 ORTHO05D007936 1.5e-100 370.2 296 62.2
SalBow7G3063 Salvia bowleyana HOM05D006242 ORTHO05D007936 5.8e-100 368.2 298 62.1
CSS0025117 Camellia sinensis var. sinensis HOM05D006242 ORTHO05D007936 9.9e-100 367.5 239 73.2
Sed0024740 Sechium edule HOM05D006242 ORTHO05D007936 9.9e-100 367.5 293 62.1
Migut.K01175 Erythranthe guttata HOM05D006242 ORTHO05D007936 1.7e-99 366.7 295 61.7
Glyma.02G163900 Glycine max HOM05D006242 ORTHO05D007936 2.9e-99 365.9 294 61.9
TPR.G10622 Trifolium pratense HOM05D006242 ORTHO05D007936 6.0e-97 358.2 293 60.1
Zm00001eb233240 Zea mays HOM05D006242 ORTHO05D007936 7.8e-97 357.8 289 59.9
COL.COLO4_17635 Corchorus olitorius HOM05D006242 ORTHO05D007936 2.3e-96 356.3 258 69.8
Psat6g094920 Pisum sativum HOM05D006242 ORTHO05D007936 3.0e-96 355.9 260 65.8
Sp2g07040 Schrenkiella parvula HOM05D006242 ORTHO05D007936 8.6e-96 354.4 262 68.3
MELO3C007020.2 Cucumis melo HOM05D006242 ORTHO05D007936 4.3e-95 352.1 325 56.9
Nitab4.5_0000138g0120 Nicotiana tabacum HOM05D006242 ORTHO05D007936 3.6e-94 349.0 299 60.2
SpUn0157_0010 Schrenkiella parvula HOM05D006242 ORTHO05D007936 3.1e-93 345.9 274 64.6
BcaC02g11584 Brassica carinata HOM05D006242 ORTHO05D007936 5.2e-93 345.1 298 61.4
SEGI_06259 Sequoiadendron giganteum HOM05D006242 ORTHO05D007936 3.8e-91 339.0 292 55.8
Hma1.2p1_1700F.1_g298210 Hydrangea macrophylla HOM05D006242 ORTHO05D007936 4.9e-91 338.6 311 57.2
Lsat_1_v5_gn_6_96480 Lactuca sativa HOM05D006242 ORTHO05D007936 7.3e-87 324.7 228 71.9
HanXRQChr12g0369481 Helianthus annuus HOM05D006242 ORTHO05D007936 2.1e-86 323.2 242 65.3
arahy.Tifrunner.gnm1.ann1.PA3R73 Arachis hypogaea HOM05D006242 ORTHO05D007936 6.2e-86 321.6 286 57.3
CiPaw.09G074600 Carya illinoinensis HOM05D006242 ORTHO05D007936 3.4e-84 315.8 208 73.6
Hma1.2p1_1499F.1_g287260 Hydrangea macrophylla HOM05D006242 ORTHO05D007936 4.9e-83 312.0 201 71.1
Cc09_g05660 Coffea canephora HOM05D006242 ORTHO05D007936 6.4e-83 311.6 231 67.1
Sopen02g010240 Solanum pennellii HOM05D006242 ORTHO05D007936 3.9e-80 302.4 201 71.1
Lj6g0012918 Lotus japonicus HOM05D006242 ORTHO05D007936 1.6e-78 297.0 202 69.3
arahy.Tifrunner.gnm1.ann1.VZGM4G Arachis hypogaea HOM05D006242 ORTHO05D007936 8.4e-75 284.6 260 56.2
AT2G35035 Arabidopsis thaliana HOM05D006242 ORTHO05D007936 4.2e-74 282.3 287 54.7
Pp3c12_18460 Physcomitrium patens HOM05D006242 ORTHO05D007936 2.3e-72 276.6 300 45.0
Phvul.007G242500 Phaseolus vulgaris HOM05D006242 ORTHO05D007936 3.9e-72 275.8 175 72.0
AagrBONN_evm.TU.Sc2ySwM_228.1028 Anthoceros agrestis HOM05D006242 ORTHO05D007936 1.5e-71 273.9 293 45.4
Mapoly0026s0041 Marchantia polymorpha HOM05D006242 ORTHO05D007936 4.3e-71 272.3 290 45.9
SMO203G0088 Selaginella moellendorffii HOM05D006242 ORTHO05D007936 4.3e-71 272.3 290 45.9
CARHR129200 Cardamine hirsuta HOM05D006242 ORTHO05D007936 5.8e-68 261.9 199 65.3
TAR624G0344 Trochodendron aralioides HOM05D006242 ORTHO05D007936 4.2e-66 255.8 185 68.1
Nn7g38280 Nelumbo nucifera HOM05D006242 ORTHO05D007936 5.5e-66 255.4 295 50.2
Glyma.20G074000 Glycine max HOM05D006242 ORTHO05D007936 7.4e-63 245.0 207 57.0
AUR62040160 Chenopodium quinoa HOM05D006242 ORTHO05D007936 5.1e-56 222.2 185 60.0
ATR1094G001 Amborella trichopoda HOM05D006242 ORTHO05D007936 3.3e-55 219.5 208 52.9
Cc09_g05680 Coffea canephora HOM05D006242 ORTHO05D007936 5.7e-55 218.8 190 58.9
VMungo0720G1734 Vigna mungo HOM05D006242 ORTHO05D007936 1.2e-52 211.1 183 57.9
CBR_g46754 Chara braunii HOM05D006242 ORTHO05D007936 4.2e-50 202.6 251 42.2
HPP92_011011 Vanilla planifolia HOM05D006242 ORTHO05D007936 2.1e-41 173.7 124 67.7
unitig_37.g12020 Utricularia gibba HOM05D006242 ORTHO05D007936 4.8e-38 162.5 124 60.5
PRCOL_00002215 Prasinoderma coloniale HOM05D005590 ORTHO05D007084 5.9e-36 155.6 322 33.2
GSVIVG01006138001 Vitis vinifera HOM05D006242 ORTHO05D007936 1.9e-34 150.6 95 76.8
Hma1.2p1_1700F.1_g298200 Hydrangea macrophylla HOM05D006242 ORTHO05D007936 7.2e-34 148.7 96 70.8
Cc09_g05630 Coffea canephora HOM05D006242 ORTHO05D007936 7.5e-31 138.7 146 52.7
SGA_v2.0_scaffold4G02502 Striga asiatica HOM05D006242 ORTHO05D007936 1.1e-29 134.8 96 69.8
Hund15670 Selenicereus undatus HOM05D006242 ORTHO05D007936 3.1e-29 133.3 95 67.4
Aqoxy1G01391 Aquilegia oxysepala HOM05D006242 ORTHO05D007936 3.5e-28 129.8 90 70.0
BraA05t20007Z Brassica rapa HOM05D003281 ORTHO05D004128 4.5e-28 129.4 126 56.3
Phvul.007G242466 Phaseolus vulgaris HOM05D006242 ORTHO05D007936 5.5e-26 122.5 107 56.1
AUR62037908 Chenopodium quinoa HOM05D006242 ORTHO05D007936 1.2e-25 121.3 109 60.6
TPR.G22035 Trifolium pratense HOM05D006242 ORTHO05D007936 3.0e-24 116.7 80 65.0
MCO04G402 Micromonas commoda HOM05D006242 ORTHO05D007936 4.0e-24 116.3 169 36.1
VMungo0720G2601 Vigna mungo HOM05D006242 ORTHO05D007936 4.4e-23 112.8 96 57.3
BcaB02g09486 Brassica carinata HOM05D006242 ORTHO05D007936 3.1e-21 106.7 102 56.9
ATR1094G019 Amborella trichopoda HOM05D006242 ORTHO05D007936 1.2e-20 104.8 81 58.0
Cc09_g05720 Coffea canephora HOM05D006242 ORTHO05D007936 3.5e-20 103.2 67 68.7
HPP92_011012 Vanilla planifolia HOM05D006242 ORTHO05D007936 5.9e-20 102.4 123 47.2
Cc09_g05640 Coffea canephora HOM05D006242 ORTHO05D007936 1.9e-18 97.4 67 62.7
Cfa025972 Carpinus fangiana HOM05D006242 ORTHO05D007936 2.1e-17 94.0 176 31.2
AUR62040161 Chenopodium quinoa HOM05D006242 ORTHO05D007936 8.8e-16 88.6 91 50.5
SHI14613 Sapria himalayana HOM05D000105 ORTHO05D000023 1.5e-15 87.8 55 69.1
CiPaw.09G216300 Carya illinoinensis HOM05D006242 ORTHO05D007936 9.8e-15 85.1 71 62.0
Cc09_g05710 Coffea canephora HOM05D006242 ORTHO05D007936 1.4e-13 81.3 59 69.5
Hund15669 Selenicereus undatus HOM05D000023 ORTHO05D000014 2.4e-13 80.5 66 65.2
Os02g0173000 Oryza sativa ssp. japonica HOM05D006242 ORTHO05D007936 7.3e-10 68.9 50 60.0


User provided reference genes

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