Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc30.106 Carica papaya HOM05D003515 ORTHO05D004347 2.7e-91 338.6 161 100.0
CiPaw.10G105500 Carya illinoinensis HOM05D003515 ORTHO05D004347 1.1e-20 104.0 131 45.0
Cfa001125 Carpinus fangiana HOM05D003515 ORTHO05D004347 1.4e-20 103.6 130 46.9
Atru.chr10.315 Acer truncatum HOM05D003515 ORTHO05D004347 7.2e-20 101.3 126 45.2
arahy.Tifrunner.gnm1.ann1.ZWBN17 Arachis hypogaea HOM05D003515 ORTHO05D004347 1.6e-19 100.1 134 42.5
Haze_05267 Corylus avellana HOM05D003515 ORTHO05D004347 1.6e-19 100.1 130 45.4
Lj4g0010619 Lotus japonicus HOM05D003515 ORTHO05D004347 6.1e-19 98.2 127 44.1
Phvul.002G188000 Phaseolus vulgaris HOM05D003515 ORTHO05D004347 1.4e-18 97.1 128 43.0
arahy.Tifrunner.gnm1.ann1.NQ3I2Y Arachis hypogaea HOM05D003515 ORTHO05D004347 3.0e-18 95.9 134 41.8
RcHm_v2.0_Chr5g0021201 Rosa chinensis HOM05D003515 ORTHO05D004347 7.4e-17 91.3 129 46.5
Medtr4g094755 Medicago truncatula HOM05D003515 ORTHO05D004347 1.7e-16 90.1 127 44.9
RcHm_v2.0_Chr5g0021121 Rosa chinensis HOM05D003515 ORTHO05D004347 1.7e-16 90.1 131 45.8
VMungo0251G3194 Vigna mungo HOM05D003515 ORTHO05D004347 2.2e-16 89.7 127 43.3
QL11p012061 Quercus lobata HOM05D003515 ORTHO05D004347 2.8e-16 89.4 144 43.1
Ca_18232_v3 Cicer arietinum L. HOM05D003515 ORTHO05D004347 3.7e-16 89.0 132 41.7
Prupe.4G118000 Prunus persica HOM05D003515 ORTHO05D004347 3.7e-16 89.0 130 43.1
TWI63G0015 Tripterygium wilfordii HOM05D003515 ORTHO05D004347 3.7e-16 89.0 142 40.1
Glyma.08G088900 Glycine max HOM05D003515 ORTHO05D004347 4.8e-16 88.6 127 40.9
TAR624G0550 Trochodendron aralioides HOM05D003515 ORTHO05D004347 6.3e-16 88.2 154 39.0
FvH4_3g13010 Fragaria vesca HOM05D003515 ORTHO05D004347 8.2e-16 87.8 131 45.8
FAN11G3814 Fragaria x ananassa HOM05D003515 ORTHO05D004347 8.2e-16 87.8 131 45.8
Dinv07004 Davidia involucrata HOM05D003515 ORTHO05D004347 1.4e-15 87.0 126 44.4
FAN16G1075 Fragaria x ananassa HOM05D003515 ORTHO05D004347 1.8e-15 86.7 131 44.3
TPR.G28148 Trifolium pratense HOM05D003515 ORTHO05D004347 3.1e-15 85.9 127 39.4
CSS0015899 Camellia sinensis var. sinensis HOM05D003515 ORTHO05D004347 9.1e-15 84.3 131 38.9
RcHm_v2.0_Chr5g0021171 Rosa chinensis HOM05D003515 ORTHO05D004347 9.1e-15 84.3 123 46.3
GSVIVG01012151001 Vitis vinifera HOM05D003515 ORTHO05D004347 1.2e-14 84.0 91 50.5
FAN21G1878 Fragaria x ananassa HOM05D003515 ORTHO05D004347 2.0e-14 83.2 131 47.3
Lj1C1149T14 Lonicera japonica HOM05D003515 ORTHO05D004347 2.6e-14 82.8 131 41.2
Nn7g38343 Nelumbo nucifera HOM05D003515 ORTHO05D004347 4.5e-14 82.0 127 44.1
vmacro03558 Vaccinium macrocarpon HOM05D003515 ORTHO05D004347 7.7e-14 81.3 126 39.7
Hma1.2p1_0088F.1_g045250 Hydrangea macrophylla HOM05D003515 ORTHO05D004347 1.3e-13 80.5 126 39.7
Manes.03G074900 Manihot esculenta HOM05D003515 ORTHO05D004347 2.2e-13 79.7 125 41.6
CANSAT35G1862 Cannabis sativa HOM05D003515 ORTHO05D004347 8.5e-13 77.8 133 40.6
Thecc.02G003700 Theobroma cacao HOM05D003515 ORTHO05D004347 8.5e-13 77.8 112 44.6
Psat7g087560 Pisum sativum HOM05D003515 ORTHO05D004347 1.1e-12 77.4 126 39.7
Lalb_Chr13g0293411 Lupinus albus HOM05D003515 ORTHO05D004347 1.4e-12 77.0 127 38.6
MD10G1227100 Malus domestica HOM05D003515 ORTHO05D004347 1.4e-12 77.0 132 42.4
Rhsim13G0134000 Rhododendron simsii HOM05D003515 ORTHO05D004347 5.5e-12 75.1 129 38.8
RhsimUnG0176900 Rhododendron simsii HOM05D003515 ORTHO05D004347 5.5e-12 75.1 129 38.8
Cc09_g05170 Coffea canephora HOM05D003515 ORTHO05D004347 1.2e-11 73.9 134 41.0
COL.COLO4_16231 Corchorus olitorius HOM05D003515 ORTHO05D004347 1.2e-11 73.9 127 37.8
CSS0041884 Camellia sinensis var. sinensis HOM05D003515 ORTHO05D004347 2.1e-11 73.2 122 36.9
CSS0001709 Camellia sinensis var. sinensis HOM05D003515 ORTHO05D004347 3.6e-11 72.4 141 35.5
Phvul.007G101032 Phaseolus vulgaris HOM05D003515 ORTHO05D004347 4.7e-11 72.0 111 40.5
CSS0004888 Camellia sinensis var. sinensis HOM05D003515 ORTHO05D004347 6.1e-11 71.6 115 39.1
Sabra03G0110800 Salix brachista HOM05D003515 ORTHO05D004347 6.1e-11 71.6 141 39.0
MELO3C007012.2 Cucumis melo HOM05D003515 ORTHO05D004347 1.0e-10 70.9 127 38.6
DCAR_007777 Daucus carota HOM05D003515 ORTHO05D004347 1.8e-10 70.1 144 31.2
MSTRG.2875 Avicennia marina HOM05D003515 ORTHO05D004347 2.3e-10 69.7 126 36.5
Gorai.009G257800 Gossypium raimondii HOM05D003515 ORTHO05D004347 2.3e-10 69.7 93 44.1
Migut.M02011 Erythranthe guttata HOM05D003515 ORTHO05D004347 3.0e-10 69.3 133 39.1
Ciclev10014398m.g Citrus clementina HOM05D003515 ORTHO05D004347 5.2e-10 68.6 63 54.0
CSS0031993 Camellia sinensis var. sinensis HOM05D003515 ORTHO05D004347 6.7e-10 68.2 62 48.4
Potri.003G152600 Populus trichocarpa HOM05D003515 ORTHO05D004347 6.7e-10 68.2 131 39.7
ClCG01G025730 Citrullus lanatus HOM05D003515 ORTHO05D004347 8.8e-10 67.8 111 42.3
Sed0024374 Sechium edule HOM05D003515 ORTHO05D004347 8.8e-10 67.8 124 36.3
Sc05g0004760 Simmondsia chinensis HOM05D003515 ORTHO05D004347 1.1e-09 67.4 128 37.5
Oeu008987.4 Olea europaea HOM05D003515 ORTHO05D004347 1.5e-09 67.0 59 59.3
Gohir.D05G247100 Gossypium hirsutum HOM05D003515 ORTHO05D004347 4.4e-09 65.5 93 41.9
Duzib132G1190 Durio zibethinus HOM05D003515 ORTHO05D004347 5.7e-09 65.1 127 34.6
Carub.0008s0352 Capsella rubella HOM05D003515 ORTHO05D004347 2.8e-08 62.8 134 38.8
PSO541G6439 Papaver somniferum HOM05D003515 ORTHO05D004347 2.8e-08 62.8 134 35.8
AL8G14790 Arabidopsis lyrata HOM05D003515 ORTHO05D004347 6.3e-08 61.6 150 36.0
Eucgr.D00012 Eucalyptus grandis HOM05D003515 ORTHO05D004347 1.1e-07 60.8 107 40.2
HanXRQChr14g0439721 Helianthus annuus HOM05D003515 ORTHO05D004347 1.4e-07 60.5 101 34.7
Aqoxy2G04030 Aquilegia oxysepala HOM05D003515 ORTHO05D004347 1.8e-07 60.1 123 30.9
C07p27710 Brassica napus HOM05D003515 ORTHO05D004347 1.8e-07 60.1 135 37.0
BolC7t43303H Brassica oleracea HOM05D003515 ORTHO05D004347 1.8e-07 60.1 135 37.0
THA.LOC104812921 Tarenaya hassleriana HOM05D003515 ORTHO05D004347 1.8e-07 60.1 67 55.2
A06p46940 Brassica napus HOM05D003515 ORTHO05D004347 3.1e-07 59.3 136 36.0
SGA_v2.0_scaffold298G47708 Striga asiatica HOM05D003515 ORTHO05D004347 3.1e-07 59.3 126 38.9
CAN.G391.1 Capsicum annuum HOM05D003515 ORTHO05D004347 4.1e-07 58.9 131 33.6
PGR004G1774 Punica granatum HOM05D003515 ORTHO05D004347 4.1e-07 58.9 50 58.0
Ah.15g091880 Amaranthus hybridus HOM05D003515 ORTHO05D004347 5.3e-07 58.5 127 31.5
BraA06t27567Z Brassica rapa HOM05D003515 ORTHO05D004347 5.3e-07 58.5 136 36.0
AUR62037879 Chenopodium quinoa HOM05D003515 ORTHO05D004347 7.0e-07 58.2 58 48.3
AUR62040333 Chenopodium quinoa HOM05D003515 ORTHO05D004347 7.0e-07 58.2 125 33.6
Os01g0757800 Oryza sativa ssp. japonica HOM05D003515 ORTHO05D004347 7.0e-07 58.2 135 31.1
Lsat_1_v5_gn_2_60141 Lactuca sativa HOM05D003515 ORTHO05D004347 1.6e-06 57.0 64 50.0
EL10Ac7g17242 Beta vulgaris HOM05D003515 ORTHO05D004347 2.0e-06 56.6 130 31.5
Solyc01g034150.4 Solanum lycopersicum HOM05D003515 ORTHO05D004347 2.0e-06 56.6 126 33.3
AT5G44740 Arabidopsis thaliana HOM05D003515 ORTHO05D004347 2.6e-06 56.2 133 36.1
PGSC0003DMG402001013 Solanum tuberosum HOM05D003515 ORTHO05D004347 3.5e-06 55.8 131 33.6
Thhalv10000807m.g Eutrema salsugineum HOM05D003515 ORTHO05D004347 4.5e-06 55.5 150 33.3
Zm00001eb152650 Zea mays HOM05D003515 ORTHO05D004347 4.5e-06 55.5 136 30.1


User provided reference genes

Program Settings