Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc30.100 Carica papaya HOM05D004928 ORTHO05D005901 3.1e-59 231.5 107 100.0
Sc04g0010410 Simmondsia chinensis HOM05D004928 ORTHO05D005901 1.9e-45 185.7 96 87.5
CANSAT54G2025 Cannabis sativa HOM05D004928 ORTHO05D005901 1.6e-44 182.6 96 83.3
GSVIVG01012153001 Vitis vinifera HOM05D004928 ORTHO05D005901 1.6e-44 182.6 96 85.4
COL.COLO4_16227 Corchorus olitorius HOM05D004928 ORTHO05D005901 2.1e-44 182.2 96 86.5
ClCG01G025740 Citrullus lanatus HOM05D004928 ORTHO05D005901 3.6e-44 181.4 96 84.4
Thecc.02G003200 Theobroma cacao HOM05D004928 ORTHO05D005901 3.6e-44 181.4 96 85.4
CARHR178170 Cardamine hirsuta HOM05D004928 ORTHO05D005901 4.7e-44 181.0 96 84.4
CsaV3_6G052980 Cucumis sativus L. HOM05D004928 ORTHO05D005901 6.2e-44 180.6 96 82.3
Thhalv10001002m.g Eutrema salsugineum HOM05D004928 ORTHO05D005901 6.2e-44 180.6 96 84.4
THA.LOC104806228 Tarenaya hassleriana HOM05D004928 ORTHO05D005901 6.2e-44 180.6 96 85.4
Sp2g09570 Schrenkiella parvula HOM05D004928 ORTHO05D005901 8.1e-44 180.3 96 84.4
Duzib052G0480 Durio zibethinus HOM05D004928 ORTHO05D005901 1.1e-43 179.9 96 85.4
Aa31LG9G8440 Aethionema arabicum HOM05D004928 ORTHO05D005901 1.4e-43 179.5 96 82.3
AUR62005675 Chenopodium quinoa HOM05D004928 ORTHO05D005901 1.8e-43 179.1 96 82.3
Manes.16G057900 Manihot esculenta HOM05D004928 ORTHO05D005901 1.8e-43 179.1 96 83.3
TWI63G1259 Tripterygium wilfordii HOM05D004928 ORTHO05D005901 1.8e-43 179.1 96 83.3
Ah.02g131070 Amaranthus hybridus HOM05D004928 ORTHO05D005901 2.4e-43 178.7 96 84.4
AL8G14800 Arabidopsis lyrata HOM05D004928 ORTHO05D005901 2.4e-43 178.7 96 83.3
AT5G44730 Arabidopsis thaliana HOM05D004928 ORTHO05D005901 2.4e-43 178.7 96 83.3
Carub.0008s0353 Capsella rubella HOM05D004928 ORTHO05D005901 2.4e-43 178.7 96 83.3
TWI63G1368 Tripterygium wilfordii HOM05D004928 ORTHO05D005901 2.4e-43 178.7 96 84.4
arahy.Tifrunner.gnm1.ann1.C65LVJ Arachis hypogaea HOM05D004928 ORTHO05D005901 3.1e-43 178.3 96 82.3
arahy.Tifrunner.gnm1.ann1.D040QL Arachis hypogaea HOM05D004928 ORTHO05D005901 3.1e-43 178.3 96 82.3
Eucgr.D00011 Eucalyptus grandis HOM05D004928 ORTHO05D005901 3.1e-43 178.3 96 83.3
Gohir.A11G219600 Gossypium hirsutum HOM05D004928 ORTHO05D005901 3.1e-43 178.3 96 83.3
Gohir.D11G203900 Gossypium hirsutum HOM05D004928 ORTHO05D005901 3.1e-43 178.3 96 83.3
Gorai.007G218800 Gossypium raimondii HOM05D004928 ORTHO05D005901 3.1e-43 178.3 96 83.3
Hund06113 Selenicereus undatus HOM05D004928 ORTHO05D005901 3.1e-43 178.3 96 84.4
Oeu008731.1 Olea europaea HOM05D004928 ORTHO05D005901 4.0e-43 177.9 96 82.3
AUR62028880 Chenopodium quinoa HOM05D004928 ORTHO05D005901 5.2e-43 177.6 96 81.2
MD10G1226900 Malus domestica HOM05D004928 ORTHO05D005901 5.2e-43 177.6 96 82.3
Haze_05274 Corylus avellana HOM05D004928 ORTHO05D005901 6.8e-43 177.2 96 82.3
PSO675G0356 Papaver somniferum HOM05D004928 ORTHO05D005901 6.8e-43 177.2 96 81.2
PSO675G4596 Papaver somniferum HOM05D004928 ORTHO05D005901 6.8e-43 177.2 96 81.2
THA.LOC104811853 Tarenaya hassleriana HOM05D004928 ORTHO05D005901 6.8e-43 177.2 96 82.3
CSS0019994 Camellia sinensis var. sinensis HOM05D004928 ORTHO05D005901 8.9e-43 176.8 96 82.3
Ciclev10016366m.g Citrus clementina HOM05D004928 ORTHO05D005901 8.9e-43 176.8 96 82.3
RcHm_v2.0_Chr5g0021221 Rosa chinensis HOM05D004928 ORTHO05D005901 8.9e-43 176.8 96 81.2
Atru.chr10.297 Acer truncatum HOM05D004928 ORTHO05D005901 1.2e-42 176.4 96 83.3
Hma1.2p1_1011F.1_g247510 Hydrangea macrophylla HOM05D004928 ORTHO05D005901 1.2e-42 176.4 96 80.2
CSS0010455 Camellia sinensis var. sinensis HOM05D004928 ORTHO05D005901 1.5e-42 176.0 96 82.3
CSS0036020 Camellia sinensis var. sinensis HOM05D004928 ORTHO05D005901 1.5e-42 176.0 96 82.3
Dinv07002 Davidia involucrata HOM05D004928 ORTHO05D005901 1.5e-42 176.0 96 80.2
FvH4_3g13030 Fragaria vesca HOM05D004928 ORTHO05D005901 1.5e-42 176.0 96 82.3
FAN11G1970 Fragaria x ananassa HOM05D004928 ORTHO05D005901 1.5e-42 176.0 96 82.3
Hma1.2p1_0088F.1_g045270 Hydrangea macrophylla HOM05D004928 ORTHO05D005901 1.5e-42 176.0 96 80.2
FAN16G2045 Fragaria x ananassa HOM05D004928 ORTHO05D005901 2.0e-42 175.6 96 81.2
FAN21G2782 Fragaria x ananassa HOM05D004928 ORTHO05D005901 2.0e-42 175.6 96 81.2
FAN25G2296 Fragaria x ananassa HOM05D004928 ORTHO05D005901 2.0e-42 175.6 96 81.2
Potri.003G154500 Populus trichocarpa HOM05D004928 ORTHO05D005901 2.0e-42 175.6 96 81.2
Prupe.4G118300 Prunus persica HOM05D004928 ORTHO05D005901 2.0e-42 175.6 96 80.2
PGR004G1274 Punica granatum HOM05D004928 ORTHO05D005901 2.0e-42 175.6 95 81.1
SalBow8G3731 Salvia bowleyana HOM05D004928 ORTHO05D005901 2.0e-42 175.6 96 82.3
Sed0024720 Sechium edule HOM05D004928 ORTHO05D005901 2.0e-42 175.6 96 81.2
Aqoxy1G01399 Aquilegia oxysepala HOM05D004928 ORTHO05D005901 3.4e-42 174.9 96 78.1
A06p46950 Brassica napus HOM05D004928 ORTHO05D005901 3.4e-42 174.9 96 81.2
BraA06t27568Z Brassica rapa HOM05D004928 ORTHO05D005901 3.4e-42 174.9 96 81.2
BcaC06g34510 Brassica carinata HOM05D004928 ORTHO05D005901 4.4e-42 174.5 96 81.2
C07p27700 Brassica napus HOM05D004928 ORTHO05D005901 4.4e-42 174.5 96 81.2
BolC7t43301H Brassica oleracea HOM05D004928 ORTHO05D005901 4.4e-42 174.5 96 81.2
Sabra03G0111800 Salix brachista HOM05D004928 ORTHO05D005901 4.4e-42 174.5 96 80.2
EL10Ac6g13559 Beta vulgaris HOM05D004928 ORTHO05D005901 5.8e-42 174.1 93 83.9
Glyma.09G050700 Glycine max HOM05D004928 ORTHO05D005901 5.8e-42 174.1 96 80.2
Lalb_Chr15g0083711 Lupinus albus HOM05D004928 ORTHO05D005901 7.6e-42 173.7 97 79.4
MBI18_g01521_MAGBIO Magnolia biondii HOM05D004928 ORTHO05D005901 7.6e-42 173.7 96 79.2
vmacro03559 Vaccinium macrocarpon HOM05D004928 ORTHO05D005901 7.6e-42 173.7 96 80.2
CiPaw.09G137900 Carya illinoinensis HOM05D004928 ORTHO05D005901 9.9e-42 173.3 96 80.2
CiPaw.10G105700 Carya illinoinensis HOM05D004928 ORTHO05D005901 9.9e-42 173.3 96 80.2
Medtr2g035440 Medicago truncatula HOM05D004928 ORTHO05D005901 9.9e-42 173.3 96 78.1
QL11p012028 Quercus lobata HOM05D004928 ORTHO05D005901 9.9e-42 173.3 96 80.2
TAR624G0928 Trochodendron aralioides HOM05D004928 ORTHO05D005901 9.9e-42 173.3 96 79.2
Duzib132G1236 Durio zibethinus HOM05D004928 ORTHO05D005901 1.3e-41 172.9 91 84.6
Lsat_1_v5_gn_8_100741 Lactuca sativa HOM05D004928 ORTHO05D005901 1.3e-41 172.9 96 78.1
Cc09_g05120 Coffea canephora HOM05D004928 ORTHO05D005901 1.7e-41 172.6 96 79.2
DCAR_007776 Daucus carota HOM05D004928 ORTHO05D005901 1.7e-41 172.6 96 78.1
Glyma.15G156700 Glycine max HOM05D004928 ORTHO05D005901 1.7e-41 172.6 96 79.2
BcaC04g21818 Brassica carinata HOM05D004928 ORTHO05D005901 2.2e-41 172.2 96 83.3
A09p21300 Brassica napus HOM05D004928 ORTHO05D005901 2.2e-41 172.2 96 83.3
C09p27080 Brassica napus HOM05D004928 ORTHO05D005901 2.2e-41 172.2 96 83.3
BolC9t55592H Brassica oleracea HOM05D004928 ORTHO05D005901 2.2e-41 172.2 96 83.3
BraA09t37735Z Brassica rapa HOM05D004928 ORTHO05D005901 2.2e-41 172.2 96 83.3
Haze_05290 Corylus avellana HOM05D004928 ORTHO05D005901 2.2e-41 172.2 98 80.6
ECA236G0137 Erigeron canadensis HOM05D004928 ORTHO05D005901 2.2e-41 172.2 96 78.1
VMungo1309G2001 Vigna mungo HOM05D004928 ORTHO05D005901 2.2e-41 172.2 96 78.1
Lj6g0011694 Lotus japonicus HOM05D004928 ORTHO05D005901 2.9e-41 171.8 96 79.2
Lalb_Chr20g0114311 Lupinus albus HOM05D004928 ORTHO05D005901 3.8e-41 171.4 96 79.2
DCAR_003759 Daucus carota HOM05D004928 ORTHO05D005901 4.9e-41 171.0 96 78.1
Lj2A342T116 Lonicera japonica HOM05D004928 ORTHO05D005901 6.4e-41 170.6 87 85.1
Rhsim07G0106700 Rhododendron simsii HOM05D004928 ORTHO05D005901 6.4e-41 170.6 96 78.1
Rhsim07G0107300 Rhododendron simsii HOM05D004928 ORTHO05D005901 6.4e-41 170.6 96 78.1
TPR.G29696 Trifolium pratense HOM05D004928 ORTHO05D005901 6.4e-41 170.6 96 77.1
Migut.M02014 Erythranthe guttata HOM05D004928 ORTHO05D005901 8.4e-41 170.2 96 80.2
HanXRQChr16g0510381 Helianthus annuus HOM05D004928 ORTHO05D005901 8.4e-41 170.2 96 78.1
HPP92_011006 Vanilla planifolia HOM05D004928 ORTHO05D005901 8.4e-41 170.2 96 77.1
Nitab4.5_0003602g0030 Nicotiana tabacum HOM05D004928 ORTHO05D005901 1.4e-40 169.5 96 79.2
TAR626G1771 Trochodendron aralioides HOM05D004928 ORTHO05D005901 1.4e-40 169.5 96 76.0
ATR0763G111 Amborella trichopoda HOM05D004928 ORTHO05D005901 2.4e-40 168.7 96 76.0
BcaB07g30927 Brassica carinata HOM05D004928 ORTHO05D005901 2.4e-40 168.7 96 82.3
Lj2A342G117 Lonicera japonica HOM05D004928 ORTHO05D005901 2.4e-40 168.7 87 83.9
CAN.G809.53 Capsicum annuum HOM05D004928 ORTHO05D005901 3.2e-40 168.3 96 78.1
Rhsim13G0134100 Rhododendron simsii HOM05D004928 ORTHO05D005901 3.2e-40 168.3 96 78.1
RhsimUnG0177000 Rhododendron simsii HOM05D004928 ORTHO05D005901 3.2e-40 168.3 96 78.1
Peaxi162Scf00036g02214 Petunia axillaris HOM05D004928 ORTHO05D005901 4.1e-40 167.9 96 77.1
Lalb_Chr15g0083731 Lupinus albus HOM05D004928 ORTHO05D005901 5.4e-40 167.5 86 84.9
Psat1g150320 Pisum sativum HOM05D004928 ORTHO05D005901 5.4e-40 167.5 96 75.0
PGSC0003DMG400007328 Solanum tuberosum HOM05D004928 ORTHO05D005901 9.2e-40 166.8 96 77.1
MSTRG.16373 Avicennia marina HOM05D004928 ORTHO05D005901 1.6e-39 166.0 96 78.1
unitig_748.g8070 Utricularia gibba HOM05D004928 ORTHO05D005901 2.1e-39 165.6 94 78.7
Zm00001eb389800 Zea mays HOM05D004928 ORTHO05D005901 2.1e-39 165.6 96 76.0
Solyc02g081830.4 Solanum lycopersicum HOM05D004928 ORTHO05D005901 3.5e-39 164.9 96 77.1
Sopen02g026430 Solanum pennellii HOM05D004928 ORTHO05D005901 3.5e-39 164.9 96 77.1
Os06g0665100 Oryza sativa ssp. japonica HOM05D004928 ORTHO05D005901 6.0e-39 164.1 96 75.0
SEGI_30550 Sequoiadendron giganteum HOM05D004928 ORTHO05D005901 6.0e-39 164.1 96 74.0
Nitab4.5_0003902g0100 Nicotiana tabacum HOM05D004928 ORTHO05D005901 7.8e-39 163.7 91 80.2
Os02g0173600 Oryza sativa ssp. japonica HOM05D004928 ORTHO05D005901 1.2e-36 156.4 100 71.0
AagrBONN_evm.TU.Sc2ySwM_228.308 Anthoceros agrestis HOM05D004928 ORTHO05D005901 6.2e-36 154.1 93 71.0
SGA_v2.0_scaffold171G38868 Striga asiatica HOM05D004928 ORTHO05D005901 1.2e-34 149.8 84 77.4
Pp3c2_4490 Physcomitrium patens HOM05D004928 ORTHO05D005901 1.5e-34 149.4 93 69.9
MD05G1245600 Malus domestica HOM05D004928 ORTHO05D005901 1.7e-33 146.0 86 74.4
Mapoly0113s0023 Marchantia polymorpha HOM05D004928 ORTHO05D005901 3.8e-33 144.8 92 68.5
SMO351G0551 Selaginella moellendorffii HOM05D004928 ORTHO05D005901 3.8e-33 144.8 88 68.2
Sopen02g026420 Solanum pennellii HOM05D004928 ORTHO05D005901 6.4e-33 144.1 94 64.9
Phvul.009G243000 Phaseolus vulgaris HOM05D004928 ORTHO05D005901 1.1e-32 143.3 78 79.5
PGSC0003DMG400007327 Solanum tuberosum HOM05D004928 ORTHO05D005901 1.1e-32 143.3 96 63.5
Pp3c17_20220 Physcomitrium patens HOM05D004928 ORTHO05D005901 2.4e-32 142.1 94 67.0
Ca_01982_v3 Cicer arietinum L. HOM05D004928 ORTHO05D005901 1.3e-30 136.3 77 76.6
Ca_01986_v3 Cicer arietinum L. HOM05D004928 ORTHO05D005901 1.3e-30 136.3 77 76.6
Pp3c8_22630 Physcomitrium patens HOM05D004928 ORTHO05D005901 6.2e-28 127.5 83 65.1
CBR_g46238 Chara braunii HOM05D000019 ORTHO05D000048 3.4e-26 121.7 96 54.2
Aa31LG9G8830 Aethionema arabicum HOM05D004928 ORTHO05D005901 4.5e-26 121.3 60 80.0
Haze_05293 Corylus avellana HOM05D004928 ORTHO05D005901 9.9e-26 120.2 62 85.5
CDE05G3391 Ceratophyllum demersum HOM05D004928 ORTHO05D005901 5.4e-24 114.4 66 72.7
CDE11G0920 Ceratophyllum demersum HOM05D004928 ORTHO05D005901 5.4e-24 114.4 66 72.7
Solyc02g081820.3 Solanum lycopersicum HOM05D004928 ORTHO05D005901 2.1e-23 112.5 94 54.3
CSS0044663 Camellia sinensis var. sinensis HOM05D004928 ORTHO05D005901 2.7e-23 112.1 66 74.2
Ca_01984_v3 Cicer arietinum L. HOM05D004928 ORTHO05D005901 3.7e-20 101.7 51 86.3
Zm00001eb207070 Zea mays HOM05D004928 ORTHO05D005901 4.0e-19 98.2 57 73.7
MD14G1109200 Malus domestica HOM05D004928 ORTHO05D005901 6.4e-17 90.9 49 73.5
PRCOL_00004641 Prasinoderma coloniale HOM05D004928 ORTHO05D005901 1.8e-11 72.8 80 43.8
Dinv01021 Davidia involucrata HOM05D004928 ORTHO05D005901 5.8e-10 67.8 34 73.5


User provided reference genes

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