Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc3.508 Carica papaya HOM05D004946 ORTHO05D006101 2.4e-148 528.9 275 100.0
Gohir.A08G095000 Gossypium hirsutum HOM05D004946 ORTHO05D006101 3.0e-58 229.6 185 67.0
Cfa019764 Carpinus fangiana HOM05D004946 ORTHO05D006101 9.6e-57 224.6 213 60.1
Thecc.03G035700 Theobroma cacao HOM05D004946 ORTHO05D006101 9.6e-57 224.6 185 65.4
MD14G1227000 Malus domestica HOM05D004946 ORTHO05D006101 2.1e-56 223.4 210 61.4
QL10p025417 Quercus lobata HOM05D004946 ORTHO05D006101 2.1e-56 223.4 185 68.1
Haze_18683 Corylus avellana HOM05D004946 ORTHO05D006101 2.8e-56 223.0 213 60.1
Atru.chr9.855 Acer truncatum HOM05D004946 ORTHO05D006101 2.6e-54 216.5 211 62.1
Ciclev10020493m.g Citrus clementina HOM05D004946 ORTHO05D006101 4.5e-54 215.7 182 63.7
Dinv28107 Davidia involucrata HOM05D004946 ORTHO05D006101 7.6e-54 214.9 218 57.3
Dinv15680 Davidia involucrata HOM05D004946 ORTHO05D006101 3.8e-53 212.6 399 40.9
COL.COLO4_11303 Corchorus olitorius HOM05D004946 ORTHO05D006101 1.1e-52 211.1 185 63.2
Duzib084G0074 Durio zibethinus HOM05D004946 ORTHO05D006101 1.9e-52 210.3 185 64.3
Prupe.5G221700 Prunus persica HOM05D004946 ORTHO05D006101 2.4e-52 209.9 183 65.6
Potri.012G056200 Populus trichocarpa HOM05D004946 ORTHO05D006101 3.2e-52 209.5 218 57.8
Gohir.D09G049200 Gossypium hirsutum HOM05D004946 ORTHO05D006101 4.6e-51 205.7 187 64.2
Hma1.2p1_0701F.1_g205890 Hydrangea macrophylla HOM05D004946 ORTHO05D006101 1.0e-50 204.5 227 55.5
Gorai.006G060600 Gossypium raimondii HOM05D004946 ORTHO05D006101 1.3e-50 204.1 187 63.6
CANSAT80G1182 Cannabis sativa HOM05D004946 ORTHO05D006101 3.9e-50 202.6 184 61.4
Gohir.D08G105600 Gossypium hirsutum HOM05D004946 ORTHO05D006101 6.7e-50 201.8 185 62.2
TWI15G0834 Tripterygium wilfordii HOM05D004946 ORTHO05D006101 5.6e-49 198.7 155 69.0
Gohir.A09G048000 Gossypium hirsutum HOM05D004946 ORTHO05D006101 7.4e-49 198.4 267 49.1
Gohir.D11G132850 Gossypium hirsutum HOM05D004946 ORTHO05D006101 7.4e-49 198.4 181 63.5
Hma1.2p1_2409F.1_g321510 Hydrangea macrophylla HOM05D004946 ORTHO05D006101 9.6e-49 198.0 271 49.4
Gohir.D05G109701 Gossypium hirsutum HOM05D004946 ORTHO05D006101 4.8e-48 195.7 181 63.0
arahy.Tifrunner.gnm1.ann1.G56NCJ Arachis hypogaea HOM05D004946 ORTHO05D006101 1.1e-47 194.5 377 40.6
FvH4_5g12080 Fragaria vesca HOM05D004946 ORTHO05D006101 1.8e-47 193.7 223 52.9
FAN08G1246 Fragaria x ananassa HOM05D004946 ORTHO05D006101 1.8e-47 193.7 223 52.9
FAN18G3139 Fragaria x ananassa HOM05D004946 ORTHO05D006101 3.1e-47 193.0 223 52.9
Actinidia18931 Actinidia chinensis HOM05D004946 ORTHO05D006101 4.0e-47 192.6 399 38.8
arahy.Tifrunner.gnm1.ann1.N3S6I2 Arachis hypogaea HOM05D004946 ORTHO05D006101 4.0e-47 192.6 377 39.8
FAN04G0770 Fragaria x ananassa HOM05D004946 ORTHO05D006101 4.0e-47 192.6 223 52.9
Gohir.D08G202000 Gossypium hirsutum HOM05D004946 ORTHO05D006101 4.0e-47 192.6 157 69.4
FAN18G2620 Fragaria x ananassa HOM05D004946 ORTHO05D006101 1.2e-46 191.0 223 52.5
Eucgr.K02226 Eucalyptus grandis HOM05D004946 ORTHO05D006101 1.5e-46 190.7 155 66.5
RcHm_v2.0_Chr7g0185491 Rosa chinensis HOM05D004946 ORTHO05D006101 7.6e-46 188.3 223 52.9
arahy.Tifrunner.gnm1.ann1.94ZJ0E Arachis hypogaea HOM05D004946 ORTHO05D006101 4.9e-45 185.7 377 39.5
Ca_25442_v3 Cicer arietinum L. HOM05D004946 ORTHO05D006101 6.5e-45 185.3 184 57.6
CiPaw.16G086800 Carya illinoinensis HOM05D004946 ORTHO05D006101 1.9e-44 183.7 187 60.4
Medtr8g104260 Medicago truncatula HOM05D004946 ORTHO05D006101 2.1e-43 180.3 219 50.7
Rhsim12G0143100 Rhododendron simsii HOM05D004946 ORTHO05D006101 1.8e-42 177.2 185 56.8
Nn4g23854 Nelumbo nucifera HOM05D004946 ORTHO05D006101 2.3e-42 176.8 154 64.9
Psat7g010600 Pisum sativum HOM05D004946 ORTHO05D006101 2.3e-42 176.8 217 49.3
GSVIVG01008293001 Vitis vinifera HOM05D004946 ORTHO05D006101 3.0e-42 176.4 156 64.7
Manes.01G011100 Manihot esculenta HOM05D004946 ORTHO05D006101 5.1e-42 175.6 218 51.8
arahy.Tifrunner.gnm1.ann1.X2WJJP Arachis hypogaea HOM05D004946 ORTHO05D006101 8.7e-42 174.9 373 37.5
Oeu064714.1 Olea europaea HOM05D004946 ORTHO05D006101 1.5e-41 174.1 392 38.8
VMungo0720G2584 Vigna mungo HOM05D004946 ORTHO05D006101 1.9e-41 173.7 227 51.1
Glyma.10G040800 Glycine max HOM05D004946 ORTHO05D006101 4.3e-41 172.6 223 52.0
Glyma.08G041600 Glycine max HOM05D004946 ORTHO05D006101 2.1e-40 170.2 154 63.6
Oeu056801.1 Olea europaea HOM05D004946 ORTHO05D006101 2.1e-40 170.2 383 38.6
Phvul.007G154000 Phaseolus vulgaris HOM05D004946 ORTHO05D006101 2.1e-40 170.2 187 56.1
Migut.I00881 Erythranthe guttata HOM05D004946 ORTHO05D006101 2.8e-40 169.9 189 57.1
Lalb_Chr05g0222491 Lupinus albus HOM05D004946 ORTHO05D006101 2.8e-40 169.9 224 49.1
Lj4g0022250 Lotus japonicus HOM05D004946 ORTHO05D006101 3.7e-40 169.5 184 54.3
FAN13G1851 Fragaria x ananassa HOM05D004946 ORTHO05D006101 4.8e-40 169.1 379 37.5
MELO3C002087.2 Cucumis melo HOM05D004946 ORTHO05D006101 1.1e-39 167.9 188 55.9
Gorai.004G113500 Gossypium raimondii HOM05D004946 ORTHO05D006101 1.8e-39 167.2 183 57.9
CSS0004173 Camellia sinensis var. sinensis HOM05D004946 ORTHO05D006101 3.1e-39 166.4 162 61.1
Sabra12G0039900 Salix brachista HOM05D004946 ORTHO05D006101 3.1e-39 166.4 219 49.3
GSVIVG01008294001 Vitis vinifera HOM05D004946 ORTHO05D006101 4.1e-39 166.0 177 57.6
Sc12g0007670 Simmondsia chinensis HOM05D004946 ORTHO05D006101 5.3e-39 165.6 208 51.9
CsaV3_1G006630 Cucumis sativus L. HOM05D004946 ORTHO05D006101 9.0e-39 164.9 188 55.3
Glyma.05G234300 Glycine max HOM05D004946 ORTHO05D006101 4.5e-38 162.5 156 62.2
MSTRG.11071 Avicennia marina HOM05D004946 ORTHO05D006101 5.9e-38 162.2 392 36.7
CARHR066930 Cardamine hirsuta HOM05D004946 ORTHO05D006101 7.6e-38 161.8 163 62.0
BcaB03g15090 Brassica carinata HOM05D004946 ORTHO05D006101 2.9e-37 159.8 214 52.8
Thhalv10018702m.g Eutrema salsugineum HOM05D004946 ORTHO05D006101 5.0e-37 159.1 160 61.9
Nn3g17855 Nelumbo nucifera HOM05D004946 ORTHO05D006101 5.0e-37 159.1 185 53.5
Ca_15108_v3 Cicer arietinum L. HOM05D004946 ORTHO05D006101 1.4e-36 157.5 156 58.3
Lalb_Chr09g0331081 Lupinus albus HOM05D004946 ORTHO05D006101 3.2e-36 156.4 225 47.6
AL2G33660 Arabidopsis lyrata HOM05D004946 ORTHO05D006101 4.2e-36 156.0 160 61.2
AT1G73840 Arabidopsis thaliana HOM05D004946 ORTHO05D006101 4.2e-36 156.0 160 60.6
TPR.G32702 Trifolium pratense HOM05D004946 ORTHO05D006101 1.2e-35 154.5 158 57.6
Carub.0002s2060 Capsella rubella HOM05D004946 ORTHO05D006101 1.6e-35 154.1 161 61.5
BolC6t38494H Brassica oleracea HOM05D004946 ORTHO05D006101 2.7e-35 153.3 214 50.0
C06p33810 Brassica napus HOM05D004946 ORTHO05D006101 3.5e-35 152.9 214 50.0
Aqoxy3G00287 Aquilegia oxysepala HOM05D004946 ORTHO05D006101 4.6e-35 152.5 183 54.6
BcaC08g45619 Brassica carinata HOM05D004946 ORTHO05D006101 4.6e-35 152.5 214 50.0
vmacro16446 Vaccinium macrocarpon HOM05D004946 ORTHO05D006101 7.9e-35 151.8 277 40.8
BcaB03g15731 Brassica carinata HOM05D004946 ORTHO05D006101 1.0e-34 151.4 163 59.5
PGR044G1576 Punica granatum HOM05D004946 ORTHO05D006101 1.0e-34 151.4 403 35.0
BcaB03g15093 Brassica carinata HOM05D004946 ORTHO05D006101 1.3e-34 151.0 163 60.1
C06p47990 Brassica napus HOM05D004946 ORTHO05D006101 1.3e-34 151.0 163 60.1
Solyc03g119460.4 Solanum lycopersicum HOM05D004946 ORTHO05D006101 1.8e-34 150.6 291 40.2
A07p29630 Brassica napus HOM05D004946 ORTHO05D006101 3.0e-34 149.8 215 50.2
PSO017G0469 Papaver somniferum HOM05D004946 ORTHO05D006101 3.9e-34 149.4 158 60.1
BcaB03g15098 Brassica carinata HOM05D004946 ORTHO05D006101 5.1e-34 149.1 259 45.9
PSO478G0599 Papaver somniferum HOM05D004946 ORTHO05D006101 5.1e-34 149.1 217 49.3
Peaxi162Scf00634g00318 Petunia axillaris HOM05D004946 ORTHO05D006101 1.1e-33 147.9 182 48.9
HanXRQChr06g0184711 Helianthus annuus HOM05D004946 ORTHO05D006101 1.5e-33 147.5 217 47.5
AUR62021632 Chenopodium quinoa HOM05D004946 ORTHO05D006101 2.5e-33 146.7 184 50.5
PGSC0003DMG401005635 Solanum tuberosum HOM05D004946 ORTHO05D006101 2.5e-33 146.7 183 50.3
ECA238G2506 Erigeron canadensis HOM05D004946 ORTHO05D006101 3.3e-33 146.4 373 34.3
AUR62008463 Chenopodium quinoa HOM05D004946 ORTHO05D006101 5.7e-33 145.6 184 50.0
Nitab4.5_0009306g0010 Nicotiana tabacum HOM05D004946 ORTHO05D006101 4.8e-32 142.5 201 48.8
CDE02G4219 Ceratophyllum demersum HOM05D004946 ORTHO05D006101 8.2e-32 141.7 183 52.5
Cc04_g07080 Coffea canephora HOM05D004946 ORTHO05D006101 8.2e-32 141.7 210 49.5
Sp5g29040 Schrenkiella parvula HOM05D004946 ORTHO05D006101 8.2e-32 141.7 215 48.4
Sopen03g038310 Solanum pennellii HOM05D004946 ORTHO05D006101 8.2e-32 141.7 187 49.7
unitig_8.g3895 Utricularia gibba HOM05D004946 ORTHO05D006101 8.2e-32 141.7 340 37.1
DCAR_023206 Daucus carota HOM05D004946 ORTHO05D006101 9.0e-31 138.3 203 47.8
ClCG04G011130 Citrullus lanatus HOM05D004946 ORTHO05D006101 1.5e-30 137.5 186 49.5
BcaNung06927 Brassica carinata HOM05D004946 ORTHO05D006101 3.4e-30 136.3 163 58.3
HPP92_004811 Vanilla planifolia HOM05D004946 ORTHO05D006101 1.0e-29 134.8 184 50.5
Nitab4.5_0000208g0330 Nicotiana tabacum HOM05D004946 ORTHO05D006101 3.8e-29 132.9 157 54.8
Nitab4.5_0012710g0020 Nicotiana tabacum HOM05D004946 ORTHO05D006101 3.8e-29 132.9 157 54.1
BraA07t31519Z Brassica rapa HOM05D004946 ORTHO05D006101 6.5e-29 132.1 234 44.4
THA.LOC104812144 Tarenaya hassleriana HOM05D004946 ORTHO05D006101 3.2e-28 129.8 183 49.2
AUR62038115 Chenopodium quinoa HOM05D004946 ORTHO05D006101 4.2e-28 129.4 184 47.3
A07p39700 Brassica napus HOM05D004946 ORTHO05D006101 5.5e-28 129.0 234 44.4
Nitab4.5_0000974g0090 Nicotiana tabacum HOM05D004946 ORTHO05D006101 5.5e-28 129.0 211 45.0
Lsat_1_v5_gn_2_12261 Lactuca sativa HOM05D004946 ORTHO05D006101 1.2e-27 127.9 357 33.3
Gohir.A11G277050 Gossypium hirsutum HOM05D004946 ORTHO05D006101 1.6e-27 127.5 86 79.1
CAN.G1889.4 Capsicum annuum HOM05D004946 ORTHO05D006101 2.7e-27 126.7 212 45.3
TAR629G2125 Trochodendron aralioides HOM05D004946 ORTHO05D006101 1.5e-25 120.9 206 40.3
Aa31LG4G4160 Aethionema arabicum HOM05D004946 ORTHO05D006101 2.5e-25 120.2 244 42.6
Peaxi162Scf00015g01034 Petunia axillaris HOM05D004946 ORTHO05D006101 9.7e-25 118.2 193 43.5
BraA07t30604Z Brassica rapa HOM05D004946 ORTHO05D006101 2.2e-24 117.1 235 41.7
SGA_v2.0_scaffold5G02571 Striga asiatica HOM05D004946 ORTHO05D006101 9.1e-23 111.7 395 31.9
Actinidia35090 Actinidia chinensis HOM05D004946 ORTHO05D006101 1.5e-22 110.9 123 52.0
Zm00001eb292700 Zea mays HOM05D004946 ORTHO05D006101 2.9e-21 106.7 183 43.7
Glyma.13G127700 Glycine max HOM05D004946 ORTHO05D006101 4.2e-20 102.8 103 63.1
Ah.11g048200 Amaranthus hybridus HOM05D004946 ORTHO05D006101 7.2e-20 102.1 156 46.2
HPP92_004808 Vanilla planifolia HOM05D004946 ORTHO05D006101 3.0e-18 96.7 161 45.3
CDE06G2845 Ceratophyllum demersum HOM05D004946 ORTHO05D006101 6.3e-16 89.0 86 62.8
ATR1125G052 Amborella trichopoda HOM05D004946 ORTHO05D006101 4.5e-14 82.8 212 40.6
BcaB03g15096 Brassica carinata HOM05D004946 ORTHO05D006101 1.1e-12 78.2 112 48.2
MBI02_g11379_MAGBIO Magnolia biondii HOM05D004946 ORTHO05D006101 3.2e-12 76.6 118 47.5
Lsat_1_v5_gn_8_63781 Lactuca sativa HOM05D003883 ORTHO05D004605 3.6e-11 73.2 81 50.6
Ca_25456_v3 Cicer arietinum L. HOM05D004946 ORTHO05D006101 4.0e-10 69.7 118 38.1
Sed0008793 Sechium edule HOM05D004946 ORTHO05D006101 1.1e-09 68.2 92 46.7
Pp3c14_13370 Physcomitrium patens HOM05D004266 ORTHO05D005151 2.4e-07 60.5 172 36.0
Duzib116G0903 Durio zibethinus HOM05D004266 ORTHO05D005151 3.1e-07 60.1 41 73.2
CDE04G2415 Ceratophyllum demersum HOM05D004266 ORTHO05D005151 4.1e-07 59.7 40 75.0
Ciclev10000749m.g Citrus clementina HOM05D004266 ORTHO05D005151 5.3e-07 59.3 49 65.3
Manes.02G186700 Manihot esculenta HOM05D004266 ORTHO05D005151 5.3e-07 59.3 77 48.1
Hma1.2p1_0276F.1_g111070 Hydrangea macrophylla HOM05D004266 ORTHO05D005151 7.0e-07 58.9 96 41.7
Lalb_Chr02g0141671 Lupinus albus HOM05D004266 ORTHO05D005151 7.0e-07 58.9 93 45.2
Thecc.08G196800 Theobroma cacao HOM05D004266 ORTHO05D005151 7.0e-07 58.9 41 70.7
CiPaw.16G006400 Carya illinoinensis HOM05D004266 ORTHO05D005151 9.1e-07 58.5 62 51.6
Nitab4.5_0001207g0010 Nicotiana tabacum HOM05D004266 ORTHO05D005151 9.1e-07 58.5 74 45.9
Gohir.A05G247600 Gossypium hirsutum HOM05D004266 ORTHO05D005151 2.0e-06 57.4 172 34.9
CSS0048022 Camellia sinensis var. sinensis HOM05D004266 ORTHO05D005151 2.7e-06 57.0 96 45.8
Sabra02G0049600 Salix brachista HOM05D004266 ORTHO05D005151 3.5e-06 56.6 96 43.8
CSS0023855 Camellia sinensis var. sinensis HOM05D004266 ORTHO05D005151 4.5e-06 56.2 163 36.2
Gorai.009G260200 Gossypium raimondii HOM05D004266 ORTHO05D005151 4.5e-06 56.2 169 34.9
Lsat_1_v5_gn_9_93500 Lactuca sativa HOM05D001433 ORTHO05D013129 4.5e-06 56.2 35 80.0
Sc03g0006210 Simmondsia chinensis HOM05D004266 ORTHO05D005151 4.5e-06 56.2 78 50.0
Actinidia33386 Actinidia chinensis HOM05D004266 ORTHO05D005151 5.9e-06 55.8 40 67.5
AUR62022307 Chenopodium quinoa HOM05D004266 ORTHO05D005151 5.9e-06 55.8 48 60.4
TAR381G0928 Trochodendron aralioides HOM05D000446 ORTHO05D005151 7.7e-06 55.5 87 46.0
Zm00001eb201080 Zea mays HOM05D004266 ORTHO05D005151 7.7e-06 55.5 60 50.0


User provided reference genes

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