Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc3.467 Carica papaya HOM05D004238 ORTHO05D004934 5.2e-243 844.0 425 100.0
Duzib084G0471 Durio zibethinus HOM05D004238 ORTHO05D004934 6.9e-179 630.9 377 82.8
GSVIVG01008335001 Vitis vinifera HOM05D004238 ORTHO05D004934 1.5e-178 629.8 377 83.0
TAR371G0763 Trochodendron aralioides HOM05D004238 ORTHO05D004934 1.7e-177 626.3 388 81.4
Dinv28139 Davidia involucrata HOM05D004238 ORTHO05D004934 3.8e-177 625.2 391 80.6
Haze_18725 Corylus avellana HOM05D004238 ORTHO05D004934 1.4e-176 623.2 399 79.7
TAR535G0010 Trochodendron aralioides HOM05D004238 ORTHO05D004934 4.2e-176 621.7 380 80.8
COL.COLO4_20838 Corchorus olitorius HOM05D004238 ORTHO05D004934 5.4e-176 621.3 381 82.4
CiPaw.16G088800 Carya illinoinensis HOM05D004238 ORTHO05D004934 1.2e-175 620.2 413 76.3
Atru.chr9.900 Acer truncatum HOM05D004238 ORTHO05D004934 5.1e-174 614.8 407 77.1
Potri.012G054200 Populus trichocarpa HOM05D004238 ORTHO05D004934 1.9e-173 612.8 425 74.4
Solyc03g119200.4 Solanum lycopersicum HOM05D004238 ORTHO05D004934 9.6e-173 610.5 397 76.3
CANSAT80G2380 Cannabis sativa HOM05D004238 ORTHO05D004934 1.3e-172 610.1 415 74.5
CSS0018341 Camellia sinensis var. sinensis HOM05D004238 ORTHO05D004934 1.6e-172 609.8 381 79.8
FAN13G1096 Fragaria x ananassa HOM05D004238 ORTHO05D004934 1.6e-172 609.8 404 76.0
Thecc.03G040700 Theobroma cacao HOM05D004238 ORTHO05D004934 2.1e-172 609.4 373 81.2
CSS0035838 Camellia sinensis var. sinensis HOM05D004238 ORTHO05D004934 4.8e-172 608.2 381 79.5
Peaxi162Scf00683g00158 Petunia axillaris HOM05D004238 ORTHO05D004934 6.2e-172 607.8 410 74.9
Hma1.2p1_1283F.1_g272760 Hydrangea macrophylla HOM05D004238 ORTHO05D004934 1.1e-171 607.1 381 79.0
Lj9C425T3 Lonicera japonica HOM05D004238 ORTHO05D004934 1.8e-171 606.3 383 78.9
DCAR_015154 Daucus carota HOM05D004238 ORTHO05D004934 2.4e-171 605.9 377 79.3
RcHm_v2.0_Chr7g0179451 Rosa chinensis HOM05D004238 ORTHO05D004934 4.0e-171 605.1 400 75.5
PGSC0003DMG400005732 Solanum tuberosum HOM05D004238 ORTHO05D004934 1.2e-170 603.6 384 77.9
FAN18G3483 Fragaria x ananassa HOM05D004238 ORTHO05D004934 2.0e-170 602.8 400 76.0
MD14G1229600 Malus domestica HOM05D004238 ORTHO05D004934 2.0e-170 602.8 385 77.1
CAN.G1129.11 Capsicum annuum HOM05D004238 ORTHO05D004934 3.4e-170 602.1 417 73.6
Nitab4.5_0004028g0040 Nicotiana tabacum HOM05D004238 ORTHO05D004934 5.8e-170 601.3 397 76.1
ClCG06G014610 Citrullus lanatus HOM05D004238 ORTHO05D004934 1.3e-169 600.1 398 75.6
Nitab4.5_0001986g0030 Nicotiana tabacum HOM05D004238 ORTHO05D004934 1.3e-169 600.1 377 79.0
TWI15G0256 Tripterygium wilfordii HOM05D004238 ORTHO05D004934 2.9e-169 599.0 376 81.4
Sed0011571 Sechium edule HOM05D004238 ORTHO05D004934 3.8e-169 598.6 381 77.4
Nn4g23948 Nelumbo nucifera HOM05D004238 ORTHO05D004934 3.2e-168 595.5 377 78.5
VMungo0251G1679 Vigna mungo HOM05D004238 ORTHO05D004934 3.2e-168 595.5 417 71.9
Aqoxy3G00204 Aquilegia oxysepala HOM05D004238 ORTHO05D004934 4.2e-168 595.1 374 77.3
Sabra12G0038000 Salix brachista HOM05D004238 ORTHO05D004934 5.5e-168 594.7 398 75.1
FAN08G0774 Fragaria x ananassa HOM05D004238 ORTHO05D004934 7.1e-168 594.3 413 73.6
Lalb_Chr13g0293671 Lupinus albus HOM05D004238 ORTHO05D004934 9.3e-168 594.0 387 75.7
MELO3C017324.2 Cucumis melo HOM05D004238 ORTHO05D004934 1.6e-167 593.2 396 74.7
CsaV3_1G004010 Cucumis sativus L. HOM05D004238 ORTHO05D004934 1.6e-167 593.2 387 75.7
Lj4g0001453 Lotus japonicus HOM05D004238 ORTHO05D004934 1.6e-167 593.2 393 74.3
Prupe.5G224400 Prunus persica HOM05D004238 ORTHO05D004934 2.7e-167 592.4 389 76.6
Glyma.05G139300 Glycine max HOM05D004238 ORTHO05D004934 4.6e-167 591.7 389 74.6
PSO017G2643 Papaver somniferum HOM05D004238 ORTHO05D004934 4.6e-167 591.7 388 75.8
TPR.G5108 Trifolium pratense HOM05D004238 ORTHO05D004934 1.3e-166 590.1 391 74.4
MBI09_g25158_MAGBIO Magnolia biondii HOM05D004238 ORTHO05D004934 1.8e-166 589.7 424 71.9
Phvul.002G182700 Phaseolus vulgaris HOM05D004238 ORTHO05D004934 1.8e-166 589.7 374 77.3
Ca_11587_v3 Cicer arietinum L. HOM05D004238 ORTHO05D004934 2.3e-166 589.3 391 74.4
Psat7g083560 Pisum sativum HOM05D004238 ORTHO05D004934 2.3e-166 589.3 413 71.7
Glyma.08G094600 Glycine max HOM05D004238 ORTHO05D004934 5.1e-166 588.2 387 75.2
arahy.Tifrunner.gnm1.ann1.KCMD1F Arachis hypogaea HOM05D004238 ORTHO05D004934 1.1e-165 587.0 381 76.9
arahy.Tifrunner.gnm1.ann1.NC6GJT Arachis hypogaea HOM05D004238 ORTHO05D004934 1.9e-165 586.3 379 77.0
Cc04_g06880 Coffea canephora HOM05D004238 ORTHO05D004934 3.3e-165 585.5 378 77.5
Oeu000985.1 Olea europaea HOM05D004238 ORTHO05D004934 3.3e-165 585.5 413 72.6
PGR083G1292 Punica granatum HOM05D004238 ORTHO05D004934 4.3e-165 585.1 384 76.8
Migut.I00409 Erythranthe guttata HOM05D004238 ORTHO05D004934 8.2e-164 580.9 390 73.8
Lsat_1_v5_gn_8_143241 Lactuca sativa HOM05D004238 ORTHO05D004934 3.1e-163 578.9 393 73.5
Gohir.D07G071400 Gossypium hirsutum HOM05D004238 ORTHO05D004934 5.3e-163 578.2 392 74.5
TAR426G0005 Trochodendron aralioides HOM05D004238 ORTHO05D004934 1.5e-162 576.6 356 80.9
Sc04g0003400 Simmondsia chinensis HOM05D004238 ORTHO05D004934 2.0e-162 576.2 418 69.6
Hund02354 Selenicereus undatus HOM05D004238 ORTHO05D004934 1.3e-161 573.5 391 72.4
FAN04G1535 Fragaria x ananassa HOM05D004238 ORTHO05D004934 1.7e-161 573.2 400 73.2
MSTRG.11313 Avicennia marina HOM05D004238 ORTHO05D004934 1.2e-159 567.0 415 69.4
Eucgr.B00825 Eucalyptus grandis HOM05D004238 ORTHO05D004934 1.8e-158 563.1 376 73.9
FvH4_5g16670 Fragaria vesca HOM05D004238 ORTHO05D004934 5.1e-158 561.6 378 75.7
Manes.01G014900 Manihot esculenta HOM05D004238 ORTHO05D004934 2.8e-156 555.8 395 72.2
BraA05t21977Z Brassica rapa HOM05D004238 ORTHO05D004934 4.1e-155 552.0 372 73.7
A05p31380 Brassica napus HOM05D004238 ORTHO05D004934 2.0e-154 549.7 372 73.1
Carub.0003s1804 Capsella rubella HOM05D004238 ORTHO05D004934 4.5e-154 548.5 374 72.5
HanXRQChr17g0559411 Helianthus annuus HOM05D004238 ORTHO05D004934 4.5e-154 548.5 387 71.1
Thhalv10020846m.g Eutrema salsugineum HOM05D004238 ORTHO05D004934 3.2e-152 542.3 374 71.9
ATR0807G117 Amborella trichopoda HOM05D004238 ORTHO05D004934 4.2e-152 542.0 379 71.8
MD06G1220000 Malus domestica HOM05D004238 ORTHO05D004934 4.2e-152 542.0 376 72.9
THA.LOC104820382 Tarenaya hassleriana HOM05D004238 ORTHO05D004934 4.2e-152 542.0 369 74.0
DCAR_011373 Daucus carota HOM05D004238 ORTHO05D004934 5.5e-152 541.6 380 70.8
PSO478G0260 Papaver somniferum HOM05D004238 ORTHO05D004934 7.2e-152 541.2 356 75.0
Dinv12220 Davidia involucrata HOM05D004238 ORTHO05D004934 9.4e-152 540.8 391 70.8
Rhsim08G0130500 Rhododendron simsii HOM05D004238 ORTHO05D004934 1.2e-151 540.4 395 71.6
Rhsim08G0130600 Rhododendron simsii HOM05D004238 ORTHO05D004934 1.2e-151 540.4 395 71.6
C05p47680 Brassica napus HOM05D004238 ORTHO05D004934 3.6e-151 538.9 372 72.3
Gorai.001G075300 Gossypium raimondii HOM05D004238 ORTHO05D004934 6.1e-151 538.1 371 73.6
BolC5t33477H Brassica oleracea HOM05D004238 ORTHO05D004934 7.9e-151 537.7 372 71.8
Dinv34796 Davidia involucrata HOM05D004238 ORTHO05D004934 3.9e-150 535.4 383 68.9
Aa31LG8G5120 Aethionema arabicum HOM05D004238 ORTHO05D004934 1.9e-149 533.1 371 70.6
AL3G31500 Arabidopsis lyrata HOM05D004238 ORTHO05D004934 3.3e-149 532.3 374 70.6
AT3G18270 Arabidopsis thaliana HOM05D004238 ORTHO05D004934 2.8e-148 529.3 373 70.2
HPP92_008849 Vanilla planifolia HOM05D004238 ORTHO05D004934 1.5e-146 523.5 383 68.1
Os01g0138900 Oryza sativa ssp. japonica HOM05D004238 ORTHO05D004934 2.0e-146 523.1 374 70.1
Thhalv10022164m.g Eutrema salsugineum HOM05D004238 ORTHO05D004934 3.2e-144 515.8 350 73.4
DCAR_011371 Daucus carota HOM05D004238 ORTHO05D004934 8.8e-142 507.7 351 72.4
CDE08G0051 Ceratophyllum demersum HOM05D004238 ORTHO05D004934 2.4e-139 499.6 389 62.7
Manes.02G071200 Manihot esculenta HOM05D004238 ORTHO05D004934 3.4e-138 495.7 383 63.2
Atru.chr1.1618 Acer truncatum HOM05D004238 ORTHO05D004934 5.9e-138 495.0 373 66.2
Ciclev10011789m.g Citrus clementina HOM05D004238 ORTHO05D004934 1.4e-136 490.3 388 63.4
DCAR_024088 Daucus carota HOM05D004238 ORTHO05D004934 9.4e-136 487.6 335 72.2
CiPaw.15G135000 Carya illinoinensis HOM05D004238 ORTHO05D004934 1.0e-134 484.2 302 78.5
Duzib138G0550 Durio zibethinus HOM05D004238 ORTHO05D004934 1.3e-132 477.2 384 62.5
Thecc.04G129000 Theobroma cacao HOM05D004238 ORTHO05D004934 7.0e-131 471.5 385 60.8
Gohir.D11G171700 Gossypium hirsutum HOM05D004238 ORTHO05D004934 2.5e-128 463.0 373 60.1
COL.COLO4_09370 Corchorus olitorius HOM05D004238 ORTHO05D004934 3.0e-126 456.1 386 58.8
CANSAT78G0772 Cannabis sativa HOM05D004238 ORTHO05D004934 4.0e-126 455.7 380 60.8
Gohir.A11G165600 Gossypium hirsutum HOM05D004238 ORTHO05D004934 5.2e-126 455.3 373 59.2
CsaV3_2G033830 Cucumis sativus L. HOM05D004238 ORTHO05D004934 1.5e-125 453.8 373 60.3
Cpa.g.sc170.33 Carica papaya HOM05D004238 ORTHO05D004934 2.4e-123 446.4 381 57.5
DCAR_011370 Daucus carota HOM05D004238 ORTHO05D004934 1.3e-121 440.7 425 56.2
Gohir.A07G066800 Gossypium hirsutum HOM05D004238 ORTHO05D004934 8.5e-121 438.0 276 77.5
ClCG11G007750 Citrullus lanatus HOM05D004238 ORTHO05D004934 2.5e-120 436.4 389 56.8
Sp3g16390 Schrenkiella parvula HOM05D004238 ORTHO05D004934 3.6e-119 432.6 357 63.9
HPP92_008863 Vanilla planifolia HOM05D004238 ORTHO05D004934 1.1e-112 411.0 351 61.8
Pp3c2_34370 Physcomitrium patens HOM05D004238 ORTHO05D004934 1.5e-112 410.6 367 57.5
DCAR_011366 Daucus carota HOM05D004238 ORTHO05D004934 2.5e-112 409.8 356 59.3
Mapoly0058s0107 Marchantia polymorpha HOM05D004238 ORTHO05D004934 2.5e-112 409.8 363 57.6
ECA233G1745 Erigeron canadensis HOM05D004238 ORTHO05D004934 7.2e-112 408.3 372 59.1
SMO146G0383 Selaginella moellendorffii HOM05D004238 ORTHO05D004934 1.5e-109 400.6 356 56.5
Zm00001eb335570 Zea mays HOM05D004238 ORTHO05D004934 4.4e-109 399.1 267 73.8
DCAR_011367 Daucus carota HOM05D004238 ORTHO05D004934 4.9e-108 395.6 349 57.9
Zm00001eb124820 Zea mays HOM05D004238 ORTHO05D004934 2.4e-107 393.3 257 74.7
Eucgr.B00826 Eucalyptus grandis HOM05D004238 ORTHO05D004934 4.1e-99 365.9 367 54.5
SMO146G0146 Selaginella moellendorffii HOM05D004238 ORTHO05D004934 2.0e-93 347.1 354 52.5
CARHR093620 Cardamine hirsuta HOM05D004238 ORTHO05D004934 8.3e-92 341.7 225 73.8
DCAR_000177 Daucus carota HOM05D004238 ORTHO05D004934 2.3e-89 333.6 226 72.6
Potri.015G044400 Populus trichocarpa HOM05D004238 ORTHO05D004934 1.2e-85 321.2 316 57.3
Nn2g15201 Nelumbo nucifera HOM05D004238 ORTHO05D004934 2.0e-77 293.9 202 75.7
DCAR_011376 Daucus carota HOM05D004238 ORTHO05D004934 3.4e-61 240.0 187 63.1
TAR371G0419 Trochodendron aralioides HOM05D004238 ORTHO05D004934 1.7e-60 237.7 190 66.8
PRCOL_00000826 Prasinoderma coloniale HOM05D004238 ORTHO05D004934 2.1e-58 230.7 330 41.5
Duzib205G0622 Durio zibethinus HOM05D004238 ORTHO05D004934 1.2e-50 204.9 233 50.6
Sabra15G0040700 Salix brachista HOM05D004238 ORTHO05D004934 4.0e-46 189.9 157 59.9
TPR.G26740 Trifolium pratense HOM05D004238 ORTHO05D004934 1.0e-41 175.3 105 82.9
MELO3C008155.2 Cucumis melo HOM05D004238 ORTHO05D004934 1.5e-40 171.4 163 52.1
Psat5g132800 Pisum sativum HOM05D004238 ORTHO05D004934 3.3e-40 170.2 118 69.5
Lalb_Chr00c06g0404671 Lupinus albus HOM05D004238 ORTHO05D004934 7.4e-40 169.1 117 71.8
DCAR_000092 Daucus carota HOM05D004238 ORTHO05D004934 8.2e-39 165.6 111 73.9
Psat0s2250g0040 Pisum sativum HOM05D005720 ORTHO05D006984 8.2e-39 165.6 163 55.8
arahy.Tifrunner.gnm1.ann1.78LW43 Arachis hypogaea HOM05D004238 ORTHO05D004934 1.1e-38 165.2 120 70.0
Sed0014968 Sechium edule HOM05D004238 ORTHO05D004934 5.3e-38 162.9 117 69.2
arahy.Tifrunner.gnm1.ann1.8NU3PL Arachis hypogaea HOM05D004238 ORTHO05D004934 3.4e-37 160.2 120 67.5
Atru.chr12.656 Acer truncatum HOM05D004238 ORTHO05D004934 6.5e-36 156.0 141 60.3
arahy.Tifrunner.gnm1.ann1.K93WBA Arachis hypogaea HOM05D004238 ORTHO05D004934 4.2e-35 153.3 109 70.6
AagrBONN_evm.TU.Sc2ySwM_117.3507 Anthoceros agrestis HOM05D004238 ORTHO05D004934 5.5e-35 152.9 165 49.7
Atru.chr12.683 Acer truncatum HOM05D004238 ORTHO05D004934 1.2e-34 151.8 112 67.9
C05p38610 Brassica napus HOM05D004238 ORTHO05D004934 2.9e-28 130.6 104 65.4
C08p35620 Brassica napus HOM05D004238 ORTHO05D004934 2.1e-26 124.4 91 68.1
Pp3s30_70 Physcomitrium patens HOM05D004238 ORTHO05D004934 3.0e-25 120.6 333 26.4
Pp3s30_460 Physcomitrium patens HOM05D019034 ORTHO05D004934 1.1e-24 118.6 326 26.4
Nn4g22334 Nelumbo nucifera HOM05D004238 ORTHO05D004934 1.3e-23 115.2 73 82.2
BolC5t32601H Brassica oleracea HOM05D004238 ORTHO05D004934 2.2e-23 114.4 91 63.7
Psat0s1333g0160 Pisum sativum HOM05D004238 ORTHO05D004934 1.9e-19 101.3 79 63.3
BcaC08g44328 Brassica carinata HOM05D004238 ORTHO05D004934 4.2e-19 100.1 75 64.0
C06p17530 Brassica napus HOM05D004238 ORTHO05D004934 4.2e-19 100.1 75 64.0
SEGI_36538 Sequoiadendron giganteum HOM05D004238 ORTHO05D004934 2.1e-18 97.8 144 38.9
BcaC05g27863 Brassica carinata HOM05D002270 ORTHO05D002866 3.6e-18 97.1 91 57.1
Dinv00811 Davidia involucrata HOM05D004238 ORTHO05D004934 1.4e-17 95.1 141 41.1
Zm00001eb084840 Zea mays HOM05D004238 ORTHO05D004934 1.8e-17 94.7 73 65.8
Nn4g22335 Nelumbo nucifera HOM05D004238 ORTHO05D004934 5.2e-17 93.2 63 76.2
arahy.Tifrunner.gnm1.ann1.QA2PAR Arachis hypogaea HOM05D004238 ORTHO05D004934 1.1e-16 92.0 71 64.8
arahy.Tifrunner.gnm1.ann1.04J95Q Arachis hypogaea HOM05D003782 ORTHO05D004361 4.4e-16 90.1 53 81.1
BcaC04g23227 Brassica carinata HOM05D004238 ORTHO05D004934 1.4e-14 85.1 62 66.1
BcaC08g45100 Brassica carinata HOM05D004238 ORTHO05D004934 1.4e-14 85.1 62 66.1
BolC6t37880H Brassica oleracea HOM05D004238 ORTHO05D004934 1.4e-14 85.1 62 66.1
BolC9t53984H Brassica oleracea HOM05D004238 ORTHO05D004934 1.4e-14 85.1 62 66.1
TAR374G1013 Trochodendron aralioides HOM05D001418 ORTHO05D002038 4.1e-14 83.6 99 47.5
Solyc08g045760.1 Solanum lycopersicum HOM05D004238 ORTHO05D004934 9.1e-14 82.4 66 63.6
VMungo1127G1492 Vigna mungo HOM05D000769 ORTHO05D000598 1.2e-13 82.0 71 60.6
Atru.chr12.682 Acer truncatum HOM05D004238 ORTHO05D004934 2.6e-13 80.9 64 65.6
BcaC06g36376 Brassica carinata HOM05D004238 ORTHO05D004934 7.7e-13 79.3 62 62.9
BolC6t36947H Brassica oleracea HOM05D004238 ORTHO05D004934 1.2e-10 72.0 58 60.3
Pp3c9_10620 Physcomitrium patens HOM05D003438 ORTHO05D004235 2.1e-10 71.2 359 28.1
Zm00001eb312660 Zea mays HOM05D004238 ORTHO05D004934 3.6e-10 70.5 77 53.2
arahy.Tifrunner.gnm1.ann1.QI3NWI Arachis hypogaea HOM05D006876 ORTHO05D008708 8.0e-10 69.3 58 56.9
Sed0018972 Sechium edule HOM05D003438 ORTHO05D004235 4.0e-09 67.0 444 24.1
CiPaw.05G119100 Carya illinoinensis HOM05D003438 ORTHO05D004235 1.5e-08 65.1 408 23.8
unitig_699.g19901 Utricularia gibba HOM05D003438 ORTHO05D004235 2.0e-08 64.7 360 26.1
Phvul.005G022900 Phaseolus vulgaris HOM05D003438 ORTHO05D004235 7.5e-08 62.8 312 25.6
Mapoly0195s0004 Marchantia polymorpha HOM05D003438 ORTHO05D004235 4.8e-07 60.1 328 26.2
SMO270G0066 Selaginella moellendorffii HOM05D003438 ORTHO05D004235 4.8e-07 60.1 358 24.6
Lj3C1025G4 Lonicera japonica HOM05D003438 ORTHO05D004235 3.1e-06 57.4 239 26.8
TAR629G1044 Trochodendron aralioides HOM05D003438 ORTHO05D004235 3.1e-06 57.4 326 26.7
MSTRG.795 Avicennia marina HOM05D003438 ORTHO05D004235 4.1e-06 57.0 354 25.4
Medtr8g069840 Medicago truncatula HOM05D003438 ORTHO05D004235 5.3e-06 56.6 282 27.0


User provided reference genes

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