Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc3.345 Carica papaya HOM05D005188 ORTHO05D006153 8.6e-88 327.0 173 100.0
Thecc.01G132900 Theobroma cacao HOM05D005188 ORTHO05D006153 9.6e-71 270.4 178 82.0
CANSAT01G0911 Cannabis sativa HOM05D005188 ORTHO05D006153 3.6e-70 268.5 173 81.5
COL.COLO4_35748 Corchorus olitorius HOM05D005188 ORTHO05D006153 3.1e-69 265.4 178 81.5
Haze_25240 Corylus avellana HOM05D005188 ORTHO05D006153 4.0e-69 265.0 178 78.1
Potri.007G105900 Populus trichocarpa HOM05D005188 ORTHO05D006153 5.3e-69 264.6 177 78.5
Cfa002897 Carpinus fangiana HOM05D005188 ORTHO05D006153 1.5e-68 263.1 178 77.5
Gohir.D11G230800 Gossypium hirsutum HOM05D005188 ORTHO05D006153 1.5e-68 263.1 179 80.4
Gohir.A11G226800 Gossypium hirsutum HOM05D005188 ORTHO05D006153 2.0e-68 262.7 179 79.9
Ciclev10002687m.g Citrus clementina HOM05D005188 ORTHO05D006153 3.4e-68 261.9 175 82.3
Potri.005G063300 Populus trichocarpa HOM05D005188 ORTHO05D006153 4.5e-68 261.5 178 78.1
CiPaw.03G121400 Carya illinoinensis HOM05D005188 ORTHO05D006153 5.8e-68 261.2 179 78.8
Medtr3g095540 Medicago truncatula HOM05D005188 ORTHO05D006153 1.3e-67 260.0 179 77.1
Sabra05G0052500 Salix brachista HOM05D005188 ORTHO05D006153 1.7e-67 259.6 178 77.5
ClCG01G015380 Citrullus lanatus HOM05D005188 ORTHO05D006153 6.4e-67 257.7 178 77.0
TPR.G18740 Trifolium pratense HOM05D005188 ORTHO05D006153 6.4e-67 257.7 178 75.8
MELO3C008060.2 Cucumis melo HOM05D005188 ORTHO05D006153 1.4e-66 256.5 178 76.4
Gorai.003G066700 Gossypium raimondii HOM05D005188 ORTHO05D006153 1.9e-66 256.1 186 77.4
VMungo0251G2948 Vigna mungo HOM05D005188 ORTHO05D006153 1.9e-66 256.1 175 76.0
CsaV3_6G041600 Cucumis sativus L. HOM05D005188 ORTHO05D006153 3.2e-66 255.4 177 76.3
CiPaw.04G081900 Carya illinoinensis HOM05D005188 ORTHO05D006153 5.4e-66 254.6 179 77.1
QL02p001672 Quercus lobata HOM05D005188 ORTHO05D006153 1.6e-65 253.1 177 76.3
Gohir.A05G384500 Gossypium hirsutum HOM05D005188 ORTHO05D006153 2.7e-65 252.3 175 78.3
TWI75G0084 Tripterygium wilfordii HOM05D005188 ORTHO05D006153 2.7e-65 252.3 177 76.8
Lalb_Chr13g0296451 Lupinus albus HOM05D005188 ORTHO05D006153 4.6e-65 251.5 179 74.9
Phvul.002G269400 Phaseolus vulgaris HOM05D005188 ORTHO05D006153 4.6e-65 251.5 177 72.9
Manes.12G156000 Manihot esculenta HOM05D005188 ORTHO05D006153 6.0e-65 251.1 177 76.8
Dinv24366 Davidia involucrata HOM05D005188 ORTHO05D006153 7.9e-65 250.8 174 77.0
Gorai.012G035200 Gossypium raimondii HOM05D005188 ORTHO05D006153 1.3e-64 250.0 175 77.1
Prupe.4G271200 Prunus persica HOM05D005188 ORTHO05D006153 1.8e-64 249.6 176 77.8
Hma1.2p1_0476F.1_g160790 Hydrangea macrophylla HOM05D005188 ORTHO05D006153 3.0e-64 248.8 174 76.4
Ca_16917_v3 Cicer arietinum L. HOM05D005188 ORTHO05D006153 8.7e-64 247.3 175 74.3
Lj1g0024625 Lotus japonicus HOM05D005188 ORTHO05D006153 1.5e-63 246.5 175 77.1
Nn2g12180 Nelumbo nucifera HOM05D005188 ORTHO05D006153 1.5e-63 246.5 177 76.8
TAR381G0300 Trochodendron aralioides HOM05D005188 ORTHO05D006153 1.9e-63 246.1 178 75.3
TWI79G1553 Tripterygium wilfordii HOM05D005188 ORTHO05D006153 3.3e-63 245.4 177 74.0
Sabra07G0086700 Salix brachista HOM05D005188 ORTHO05D006153 5.6e-63 244.6 173 74.0
MBI06_g39404_MAGBIO Magnolia biondii HOM05D005188 ORTHO05D006153 7.4e-63 244.2 174 74.1
CDE08G0648 Ceratophyllum demersum HOM05D005188 ORTHO05D006153 9.6e-63 243.8 174 73.6
Aa31LG1G17870 Aethionema arabicum HOM05D005188 ORTHO05D006153 1.1e-61 240.4 178 73.0
Migut.H00702 Erythranthe guttata HOM05D005188 ORTHO05D006153 1.4e-61 240.0 173 71.7
Cc10_g12590 Coffea canephora HOM05D005188 ORTHO05D006153 2.4e-61 239.2 174 71.3
PGR008G0006 Punica granatum HOM05D005188 ORTHO05D006153 2.4e-61 239.2 174 74.7
PGR119G0239 Punica granatum HOM05D005188 ORTHO05D006153 2.4e-61 239.2 174 74.7
DCAR_001211 Daucus carota HOM05D005188 ORTHO05D006153 3.1e-61 238.8 173 72.8
Glyma.06G150300 Glycine max HOM05D005188 ORTHO05D006153 5.3e-61 238.0 175 74.9
Actinidia06616 Actinidia chinensis HOM05D005188 ORTHO05D006153 1.2e-60 236.9 174 73.0
arahy.Tifrunner.gnm1.ann1.DJM1RY Arachis hypogaea HOM05D005188 ORTHO05D006153 1.2e-60 236.9 177 74.6
CDE02G4401 Ceratophyllum demersum HOM05D005188 ORTHO05D006153 1.5e-60 236.5 174 73.0
arahy.Tifrunner.gnm1.ann1.V5WWJ8 Arachis hypogaea HOM05D005188 ORTHO05D006153 2.0e-60 236.1 177 74.0
Lj2A607T35 Lonicera japonica HOM05D005188 ORTHO05D006153 2.0e-60 236.1 177 71.8
CARHR277950 Cardamine hirsuta HOM05D005188 ORTHO05D006153 2.6e-60 235.7 177 74.6
Aqoxy5G02315 Aquilegia oxysepala HOM05D005188 ORTHO05D006153 3.4e-60 235.3 175 72.0
Glyma.04G215800 Glycine max HOM05D005188 ORTHO05D006153 3.4e-60 235.3 176 75.0
Psat5g063680 Pisum sativum HOM05D005188 ORTHO05D006153 4.5e-60 235.0 178 70.8
CAN.G792.16 Capsicum annuum HOM05D005188 ORTHO05D006153 5.8e-60 234.6 176 73.3
Peaxi162Scf01257g00019 Petunia axillaris HOM05D005188 ORTHO05D006153 5.8e-60 234.6 181 71.3
Sopen08g004510 Solanum pennellii HOM05D005188 ORTHO05D006153 7.6e-60 234.2 174 74.1
Oeu037826.1 Olea europaea HOM05D005188 ORTHO05D006153 1.0e-59 233.8 173 71.1
AL8G41300 Arabidopsis lyrata HOM05D005188 ORTHO05D006153 1.7e-59 233.0 178 73.6
AT5G64040 Arabidopsis thaliana HOM05D005188 ORTHO05D006153 2.9e-59 232.3 178 73.0
Solyc08g013670.3 Solanum lycopersicum HOM05D005188 ORTHO05D006153 2.9e-59 232.3 175 73.7
MSTRG.2649 Avicennia marina HOM05D005188 ORTHO05D006153 3.8e-59 231.9 176 69.9
Sp2g27110 Schrenkiella parvula HOM05D005188 ORTHO05D006153 4.9e-59 231.5 177 72.9
Carub.0008s2482 Capsella rubella HOM05D005188 ORTHO05D006153 8.4e-59 230.7 178 72.5
Lj4g0001203 Lotus japonicus HOM05D005188 ORTHO05D006153 1.1e-58 230.3 178 69.7
PGSC0003DMG400005805 Solanum tuberosum HOM05D005188 ORTHO05D006153 1.4e-58 229.9 177 71.8
MD15G1441800 Malus domestica HOM05D005188 ORTHO05D006153 1.9e-58 229.6 173 69.4
Sed0019160 Sechium edule HOM05D005188 ORTHO05D006153 1.9e-58 229.6 180 70.0
SGA_v2.0_scaffold370G50114 Striga asiatica HOM05D005188 ORTHO05D006153 2.5e-58 229.2 174 70.7
Thhalv10005005m.g Eutrema salsugineum HOM05D005188 ORTHO05D006153 4.2e-58 228.4 177 71.8
SalBow1G2748 Salvia bowleyana HOM05D005188 ORTHO05D006153 5.5e-58 228.0 173 72.3
unitig_899.g14682 Utricularia gibba HOM05D005188 ORTHO05D006153 9.3e-58 227.3 174 69.0
BcaB02g09793 Brassica carinata HOM05D005188 ORTHO05D006153 1.2e-57 226.9 177 71.2
BcaC01g02658 Brassica carinata HOM05D005188 ORTHO05D006153 1.2e-57 226.9 177 71.2
BcaC01g02659 Brassica carinata HOM05D005188 ORTHO05D006153 1.2e-57 226.9 177 71.2
C09p09640 Brassica napus HOM05D005188 ORTHO05D006153 7.9e-57 224.2 177 71.2
FvH4_1g24360 Fragaria vesca HOM05D005188 ORTHO05D006153 7.9e-57 224.2 173 69.9
FAN19G1208 Fragaria x ananassa HOM05D005188 ORTHO05D006153 7.9e-57 224.2 173 69.9
CSS0010064 Camellia sinensis var. sinensis HOM05D005188 ORTHO05D006153 1.0e-56 223.8 178 69.1
CSS0045275 Camellia sinensis var. sinensis HOM05D005188 ORTHO05D006153 1.0e-56 223.8 178 69.1
Nitab4.5_0000673g0170 Nicotiana tabacum HOM05D005188 ORTHO05D006153 1.0e-56 223.8 174 73.6
Hund23270 Selenicereus undatus HOM05D005188 ORTHO05D006153 1.0e-56 223.8 179 69.8
BcaB07g29717 Brassica carinata HOM05D005188 ORTHO05D006153 1.3e-56 223.4 177 71.2
HanXRQChr04g0107551 Helianthus annuus HOM05D005188 ORTHO05D006153 1.3e-56 223.4 173 68.8
MD01G1004300 Malus domestica HOM05D005188 ORTHO05D006153 1.3e-56 223.4 174 67.8
ATR0987G005 Amborella trichopoda HOM05D005188 ORTHO05D006153 1.8e-56 223.0 180 68.3
AUR62017881 Chenopodium quinoa HOM05D005188 ORTHO05D006153 1.8e-56 223.0 178 68.5
Lsat_1_v5_gn_1_10061 Lactuca sativa HOM05D005188 ORTHO05D006153 3.9e-56 221.9 175 68.0
ECA247G1960 Erigeron canadensis HOM05D005188 ORTHO05D006153 6.7e-56 221.1 171 69.6
FAN28G1395 Fragaria x ananassa HOM05D002517 ORTHO05D003040 1.1e-55 220.3 171 69.0
Ah.02g121530 Amaranthus hybridus HOM05D005188 ORTHO05D006153 1.5e-55 219.9 174 69.0
A06p30750 Brassica napus HOM05D005188 ORTHO05D006153 1.5e-55 219.9 177 69.5
C02p63110 Brassica napus HOM05D005188 ORTHO05D006153 1.5e-55 219.9 177 70.6
BolC2t12383H Brassica oleracea HOM05D005188 ORTHO05D006153 1.5e-55 219.9 177 70.6
MBI03_g42548_MAGBIO Magnolia biondii HOM05D005188 ORTHO05D006153 1.9e-55 219.5 175 69.1
BcaC03g18240 Brassica carinata HOM05D005188 ORTHO05D006153 2.5e-55 219.2 177 70.6
MBI06_g27435_MAGBIO Magnolia biondii HOM05D005188 ORTHO05D006153 4.3e-55 218.4 151 75.5
Sed0010246 Sechium edule HOM05D005188 ORTHO05D006153 5.7e-55 218.0 175 69.1
PSO541G2775 Papaver somniferum HOM05D005188 ORTHO05D006153 9.6e-55 217.2 172 68.0
RcHm_v2.0_Chr2g0120891 Rosa chinensis HOM05D005188 ORTHO05D006153 9.6e-55 217.2 173 67.1
HPP92_019391 Vanilla planifolia HOM05D005188 ORTHO05D006153 1.6e-54 216.5 173 67.1
PSO675G9377 Papaver somniferum HOM05D005188 ORTHO05D006153 2.1e-54 216.1 172 68.0
GSVIVG01026478001 Vitis vinifera HOM05D005188 ORTHO05D006153 2.8e-54 215.7 173 66.5
FAN26G2437 Fragaria x ananassa HOM05D002517 ORTHO05D006153 6.2e-54 214.5 173 68.8
BolC9t53875H Brassica oleracea HOM05D005188 ORTHO05D006153 8.2e-54 214.2 188 66.5
THA.LOC104800083 Tarenaya hassleriana HOM05D005188 ORTHO05D006153 1.1e-53 213.8 178 69.7
Atru.chr4.905 Acer truncatum HOM05D005188 ORTHO05D006153 1.7e-51 206.5 174 66.1
Rhsim10G0133700 Rhododendron simsii HOM05D005188 ORTHO05D006153 1.7e-51 206.5 180 67.2
vmacro12795 Vaccinium macrocarpon HOM05D005188 ORTHO05D006153 1.7e-51 206.5 179 66.5
BolC3t18491H Brassica oleracea HOM05D005188 ORTHO05D006153 1.2e-49 200.3 181 65.2
Duzib264G0557 Durio zibethinus HOM05D005188 ORTHO05D006153 2.7e-49 199.1 149 78.5
EL10Ac6g15302 Beta vulgaris HOM05D005188 ORTHO05D006153 5.7e-47 191.4 131 73.3
Duzib147G0711 Durio zibethinus HOM05D005188 ORTHO05D006153 1.3e-46 190.3 149 76.5
Oeu050119.1 Olea europaea HOM05D005188 ORTHO05D006153 1.4e-45 186.8 173 60.7
Eucgr.I00200 Eucalyptus grandis HOM05D005188 ORTHO05D006153 3.1e-45 185.7 150 74.0
A09p08510 Brassica napus HOM05D005188 ORTHO05D006153 4.1e-45 185.3 177 62.7
BraA09t36500Z Brassica rapa HOM05D005188 ORTHO05D006153 4.1e-45 185.3 177 62.7
Zm00001eb138650 Zea mays HOM05D005188 ORTHO05D006153 1.2e-44 183.7 156 63.5
Zm00001eb409220 Zea mays HOM05D005188 ORTHO05D006153 1.2e-44 183.7 153 64.1
Os12g0189400 Oryza sativa ssp. japonica HOM05D005188 ORTHO05D006153 1.5e-44 183.3 112 79.5
C03p62290 Brassica napus HOM05D005188 ORTHO05D006153 4.3e-39 165.2 147 68.0
BraA06t26017Z Brassica rapa HOM05D005188 ORTHO05D006153 5.3e-37 158.3 147 66.0
Sc16g0003820 Simmondsia chinensis HOM05D005188 ORTHO05D006153 9.1e-37 157.5 144 64.6
Duzib187G0538 Durio zibethinus HOM05D005188 ORTHO05D006153 1.0e-35 154.1 132 71.2
SEGI_16120 Sequoiadendron giganteum HOM05D005188 ORTHO05D006153 1.7e-35 153.3 166 50.0
SMO144G0055 Selaginella moellendorffii HOM05D005188 ORTHO05D006153 2.7e-33 146.0 82 78.0
BcaB04g17222 Brassica carinata HOM05D005188 ORTHO05D006153 3.3e-31 139.0 122 59.8
BcaB08g36594 Brassica carinata HOM05D005188 ORTHO05D006153 5.3e-29 131.7 74 82.4
BolC2t07163H Brassica oleracea HOM05D005188 ORTHO05D006153 7.0e-29 131.3 74 82.4
BolC7t41311H Brassica oleracea HOM05D005188 ORTHO05D006153 1.5e-28 130.2 72 83.3
BcaC04g18786 Brassica carinata HOM05D005188 ORTHO05D006153 5.9e-28 128.3 74 79.7
Mapoly0116s0042 Marchantia polymorpha HOM05D005188 ORTHO05D006153 1.5e-26 123.6 157 43.9
AUR62003566 Chenopodium quinoa HOM05D005188 ORTHO05D006153 3.6e-25 119.0 173 45.7
Cre02.g082500 Chlamydomonas reinhardtii HOM05D005188 ORTHO05D006153 2.6e-20 102.8 133 44.4
BcaC03g13890 Brassica carinata HOM05D005188 ORTHO05D006153 5.9e-20 101.7 74 67.6
Nn5g28540 Nelumbo nucifera HOM05D005188 ORTHO05D006153 5.0e-19 98.6 106 64.2
AagrBONN_evm.TU.Sc2ySwM_362.2803 Anthoceros agrestis HOM05D005188 ORTHO05D006153 1.1e-18 97.4 95 57.9
Gohir.D04G031000 Gossypium hirsutum HOM05D006465 ORTHO05D008207 4.2e-18 95.5 110 61.8
Nitab4.5_0005544g0070 Nicotiana tabacum HOM05D005188 ORTHO05D006153 7.2e-18 94.7 110 60.9
BraA02t09233Z Brassica rapa HOM05D005188 ORTHO05D006153 2.1e-17 93.2 120 60.0
PRCOL_00004565 Prasinoderma coloniale HOM05D005188 ORTHO05D006153 5.2e-16 88.6 87 56.3
MCO09G058 Micromonas commoda HOM05D005188 ORTHO05D006153 1.3e-14 84.0 143 37.8
A02p43130 Brassica napus HOM05D005188 ORTHO05D006153 1.4e-13 80.5 105 59.0
CBR_g45633 Chara braunii HOM05D005188 ORTHO05D006153 1.4e-13 80.5 127 42.5
C02p10930 Brassica napus HOM05D005188 ORTHO05D006153 5.2e-08 62.0 30 83.3


User provided reference genes

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