Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc3.324 Carica papaya HOM05D004547 ORTHO05D005133 0.0e+00 1599.7 841 100.0
Duzib205G1908 Durio zibethinus HOM05D004547 ORTHO05D005133 0.0e+00 1414.1 840 87.4
Thecc.03G155600 Theobroma cacao HOM05D004547 ORTHO05D005133 0.0e+00 1410.6 840 87.1
QL09p005748 Quercus lobata HOM05D004547 ORTHO05D005133 0.0e+00 1399.0 839 86.7
Manes.06G134600 Manihot esculenta HOM05D004547 ORTHO05D005133 0.0e+00 1396.3 841 86.1
Atru.chr1.728 Acer truncatum HOM05D004547 ORTHO05D005133 0.0e+00 1395.9 841 85.9
Dinv28576 Davidia involucrata HOM05D004547 ORTHO05D005133 0.0e+00 1394.0 840 86.1
Ciclev10004313m.g Citrus clementina HOM05D004547 ORTHO05D005133 0.0e+00 1393.6 841 86.1
CiPaw.03G093300 Carya illinoinensis HOM05D004547 ORTHO05D005133 0.0e+00 1392.9 841 85.5
Gorai.008G216000 Gossypium raimondii HOM05D004547 ORTHO05D005133 0.0e+00 1374.0 841 85.3
PGR042G2008 Punica granatum HOM05D004547 ORTHO05D005133 0.0e+00 1372.5 841 84.1
Gohir.D12G200900 Gossypium hirsutum HOM05D004547 ORTHO05D005133 0.0e+00 1371.7 841 84.9
Gohir.A12G198300 Gossypium hirsutum HOM05D004547 ORTHO05D005133 0.0e+00 1369.0 841 84.5
Prupe.2G277000 Prunus persica HOM05D004547 ORTHO05D005133 0.0e+00 1368.6 842 84.0
CSS0028755 Camellia sinensis var. sinensis HOM05D004547 ORTHO05D005133 0.0e+00 1368.2 840 83.3
TAR375G0699 Trochodendron aralioides HOM05D004547 ORTHO05D005133 0.0e+00 1363.2 840 83.8
Cfa008167 Carpinus fangiana HOM05D004547 ORTHO05D005133 0.0e+00 1362.4 841 84.2
GSVIVG01018659001 Vitis vinifera HOM05D004547 ORTHO05D005133 0.0e+00 1362.1 841 83.8
Potri.003G109100 Populus trichocarpa HOM05D004547 ORTHO05D005133 0.0e+00 1360.1 840 83.8
Eucgr.A02893 Eucalyptus grandis HOM05D004547 ORTHO05D005133 0.0e+00 1356.7 841 83.7
Actinidia31780 Actinidia chinensis HOM05D004547 ORTHO05D005133 0.0e+00 1354.3 840 83.0
Hma1.2p1_0432F.1_g151760 Hydrangea macrophylla HOM05D004547 ORTHO05D005133 0.0e+00 1351.3 841 82.6
RcHm_v2.0_Chr1g0374281 Rosa chinensis HOM05D004547 ORTHO05D005133 0.0e+00 1347.8 842 82.8
CANSAT56G3837 Cannabis sativa HOM05D004547 ORTHO05D005133 0.0e+00 1346.3 842 83.4
FAN03G1184 Fragaria x ananassa HOM05D004547 ORTHO05D005133 0.0e+00 1343.6 842 82.5
FvH4_7g27490 Fragaria vesca HOM05D004547 ORTHO05D005133 0.0e+00 1343.2 842 82.7
THA.LOC104811522 Tarenaya hassleriana HOM05D004547 ORTHO05D005133 0.0e+00 1342.8 841 81.7
CsaV3_3G016130 Cucumis sativus L. HOM05D004547 ORTHO05D005133 0.0e+00 1340.5 841 82.2
FAN01G0567 Fragaria x ananassa HOM05D004547 ORTHO05D005133 0.0e+00 1339.3 842 82.4
MELO3C006811.2 Cucumis melo HOM05D004547 ORTHO05D005133 0.0e+00 1336.6 841 81.9
Sed0001089 Sechium edule HOM05D004547 ORTHO05D005133 0.0e+00 1334.3 841 81.1
Rhsim03G0167200 Rhododendron simsii HOM05D004547 ORTHO05D005133 0.0e+00 1333.9 841 82.8
Lj3g0004511 Lotus japonicus HOM05D004547 ORTHO05D005133 0.0e+00 1330.5 840 83.0
Glyma.12G013000 Glycine max HOM05D004547 ORTHO05D005133 0.0e+00 1330.1 840 82.5
Glyma.09G224000 Glycine max HOM05D004547 ORTHO05D005133 0.0e+00 1329.7 840 82.6
Sed0008837 Sechium edule HOM05D004547 ORTHO05D005133 0.0e+00 1329.7 841 81.5
Ca_19628_v3 Cicer arietinum L. HOM05D004547 ORTHO05D005133 0.0e+00 1324.3 841 82.6
Medtr0004s0490 Medicago truncatula HOM05D004547 ORTHO05D005133 0.0e+00 1319.7 840 82.6
ClCG05G007360 Citrullus lanatus HOM05D004547 ORTHO05D005133 0.0e+00 1319.3 830 82.3
FAN06G1879 Fragaria x ananassa HOM05D004547 ORTHO05D005133 0.0e+00 1317.4 862 80.4
Sabra03G0075600 Salix brachista HOM05D004547 ORTHO05D005133 0.0e+00 1315.1 933 75.3
AL8G25720 Arabidopsis lyrata HOM05D004547 ORTHO05D005133 0.0e+00 1313.9 841 80.5
AT5G51430 Arabidopsis thaliana HOM05D004547 ORTHO05D005133 0.0e+00 1313.9 841 80.5
VMungo1127G1242 Vigna mungo HOM05D004547 ORTHO05D005133 0.0e+00 1313.9 840 82.0
Carub.0008s1145 Capsella rubella HOM05D004547 ORTHO05D005133 0.0e+00 1313.1 841 80.1
arahy.Tifrunner.gnm1.ann1.TL2CDN Arachis hypogaea HOM05D004547 ORTHO05D005133 0.0e+00 1309.7 840 82.0
CARHR264160 Cardamine hirsuta HOM05D004547 ORTHO05D005133 0.0e+00 1309.3 841 79.9
Phvul.011G016000 Phaseolus vulgaris HOM05D004547 ORTHO05D005133 0.0e+00 1308.5 840 81.8
arahy.Tifrunner.gnm1.ann1.J7T2TK Arachis hypogaea HOM05D004547 ORTHO05D005133 0.0e+00 1304.7 840 81.8
Sp6g13590 Schrenkiella parvula HOM05D004547 ORTHO05D005133 0.0e+00 1304.7 841 79.8
BcaB08g35501 Brassica carinata HOM05D004547 ORTHO05D005133 0.0e+00 1302.3 841 79.5
Thhalv10012691m.g Eutrema salsugineum HOM05D004547 ORTHO05D005133 0.0e+00 1302.0 841 79.9
Cc02_g04280 Coffea canephora HOM05D004547 ORTHO05D005133 0.0e+00 1300.4 848 78.8
Aa31sc202G10 Aethionema arabicum HOM05D004547 ORTHO05D005133 0.0e+00 1298.5 840 79.2
Lj1A979T84 Lonicera japonica HOM05D004547 ORTHO05D005133 0.0e+00 1298.5 840 80.4
A02p12350 Brassica napus HOM05D004547 ORTHO05D005133 0.0e+00 1287.3 842 79.0
BraA10t43010Z Brassica rapa HOM05D004547 ORTHO05D005133 0.0e+00 1287.3 842 79.0
BcaC04g20676 Brassica carinata HOM05D004547 ORTHO05D005133 0.0e+00 1285.0 841 78.7
A10p09340 Brassica napus HOM05D004547 ORTHO05D005133 0.0e+00 1285.0 842 79.0
C02p20480 Brassica napus HOM05D004547 ORTHO05D005133 0.0e+00 1282.7 841 78.4
BolC9t56951H Brassica oleracea HOM05D004547 ORTHO05D005133 0.0e+00 1280.8 842 78.6
C09p40720 Brassica napus HOM05D004547 ORTHO05D005133 0.0e+00 1280.4 842 78.6
Nn1g01023 Nelumbo nucifera HOM05D004547 ORTHO05D005133 0.0e+00 1277.7 840 78.6
Aqoxy2G03231 Aquilegia oxysepala HOM05D004547 ORTHO05D005133 0.0e+00 1277.3 842 79.0
Lalb_Chr03g0024271 Lupinus albus HOM05D004547 ORTHO05D005133 0.0e+00 1276.9 840 80.4
Oeu022486.1 Olea europaea HOM05D004547 ORTHO05D005133 0.0e+00 1275.0 841 77.4
PGSC0003DMG400017618 Solanum tuberosum HOM05D004547 ORTHO05D005133 0.0e+00 1271.1 841 77.5
PSO266G0090 Papaver somniferum HOM05D004547 ORTHO05D005133 0.0e+00 1267.7 854 78.6
TWI39G0203 Tripterygium wilfordii HOM05D004547 ORTHO05D005133 0.0e+00 1267.7 841 79.7
EL10Ac2g04890 Beta vulgaris HOM05D004547 ORTHO05D005133 0.0e+00 1263.8 843 77.7
Migut.F00479 Erythranthe guttata HOM05D004547 ORTHO05D005133 0.0e+00 1262.7 841 76.9
Sopen05g002910 Solanum pennellii HOM05D004547 ORTHO05D005133 0.0e+00 1260.7 841 76.9
PSO384G4058 Papaver somniferum HOM05D004547 ORTHO05D005133 0.0e+00 1260.4 854 78.5
Peaxi162Scf00023g01214 Petunia axillaris HOM05D004547 ORTHO05D005133 0.0e+00 1260.0 845 77.9
Sc14g0005530 Simmondsia chinensis HOM05D004547 ORTHO05D005133 0.0e+00 1258.0 840 77.9
Medtr6g005610 Medicago truncatula HOM05D004547 ORTHO05D005133 0.0e+00 1252.7 840 78.6
SalBow5G1900 Salvia bowleyana HOM05D004547 ORTHO05D005133 0.0e+00 1251.1 858 75.4
SalBow5G5604 Salvia bowleyana HOM05D004547 ORTHO05D005133 0.0e+00 1250.7 858 75.3
HanXRQChr16g0512771 Helianthus annuus HOM05D004547 ORTHO05D005133 0.0e+00 1244.2 841 76.7
Nitab4.5_0004665g0060 Nicotiana tabacum HOM05D004547 ORTHO05D005133 0.0e+00 1242.3 842 76.8
ECA232G2122 Erigeron canadensis HOM05D004547 ORTHO05D005133 0.0e+00 1231.5 841 76.0
MSTRG.8826 Avicennia marina HOM05D004547 ORTHO05D005133 0.0e+00 1231.1 841 75.0
Lsat_1_v5_gn_9_52061 Lactuca sativa HOM05D004547 ORTHO05D005133 0.0e+00 1226.8 841 76.3
Ah.10g036230 Amaranthus hybridus HOM05D004547 ORTHO05D005133 0.0e+00 1217.2 840 74.9
ATR0317G078 Amborella trichopoda HOM05D004547 ORTHO05D005133 0.0e+00 1215.7 843 74.3
CAN.G16.15 Capsicum annuum HOM05D004547 ORTHO05D005133 0.0e+00 1214.1 841 74.2
DCAR_020189 Daucus carota HOM05D004547 ORTHO05D005133 0.0e+00 1212.6 842 75.2
Hund13892 Selenicereus undatus HOM05D004547 ORTHO05D005133 0.0e+00 1203.0 809 77.4
TAR374G0871 Trochodendron aralioides HOM05D004547 ORTHO05D005133 0.0e+00 1203.0 745 82.3
vmacro06799 Vaccinium macrocarpon HOM05D004547 ORTHO05D005133 0.0e+00 1196.8 866 75.1
MD01G1182800 Malus domestica HOM05D004547 ORTHO05D005133 0.0e+00 1194.1 726 84.8
TPR.G20262 Trifolium pratense HOM05D004547 ORTHO05D005133 0.0e+00 1192.9 842 76.4
AUR62022938 Chenopodium quinoa HOM05D004547 ORTHO05D005133 0.0e+00 1185.6 858 73.0
AUR62012299 Chenopodium quinoa HOM05D004547 ORTHO05D005133 0.0e+00 1173.3 840 73.3
SGA_v2.0_scaffold44G16547 Striga asiatica HOM05D004547 ORTHO05D005133 0.0e+00 1151.7 1001 63.2
unitig_37.g11930 Utricularia gibba HOM05D004547 ORTHO05D005133 0.0e+00 1109.7 842 67.8
Medtr6g005670 Medicago truncatula HOM05D004547 ORTHO05D005133 5.8e-312 1073.5 839 70.6
Psat0s2825g0040 Pisum sativum HOM05D004547 ORTHO05D005133 8.6e-311 1070.1 685 81.0
Zm00001eb389950 Zea mays HOM05D004547 ORTHO05D005133 6.7e-295 1017.3 725 71.6
Pp3c7_60 Physcomitrium patens HOM05D004547 ORTHO05D005133 1.1e-257 893.6 861 56.6
Mapoly0007s0274 Marchantia polymorpha HOM05D004547 ORTHO05D005133 3.4e-254 882.1 857 54.7
Hma1.2p1_0432F.1_g151750 Hydrangea macrophylla HOM05D004547 ORTHO05D005133 1.2e-246 857.1 522 83.0
BcaC03g14608 Brassica carinata HOM05D004547 ORTHO05D005133 6.2e-240 834.7 547 77.5
CARHR150020 Cardamine hirsuta HOM05D004547 ORTHO05D005133 1.2e-235 820.5 610 69.5
SMO134G0015 Selaginella moellendorffii HOM05D004547 ORTHO05D005133 2.3e-234 816.2 844 53.4
Nitab4.5_0000895g0220 Nicotiana tabacum HOM05D004547 ORTHO05D005133 5.8e-230 801.6 546 75.3
AagrBONN_evm.TU.Sc2ySwM_117.1032 Anthoceros agrestis HOM05D004547 ORTHO05D005133 6.4e-229 798.1 751 57.8
HPP92_005319 Vanilla planifolia HOM05D004547 ORTHO05D005133 7.4e-225 784.6 617 67.7
FAN06G1216 Fragaria x ananassa HOM05D004547 ORTHO05D005133 1.8e-215 753.4 512 78.1
COL.COLO4_14121 Corchorus olitorius HOM05D004547 ORTHO05D005133 2.1e-203 713.4 429 88.1
CBR_g31542 Chara braunii HOM05D004547 ORTHO05D005133 9.4e-196 688.0 900 45.3
CDE04G0004 Ceratophyllum demersum HOM05D004547 ORTHO05D005133 2.7e-195 686.4 564 66.0
MD07G1253600 Malus domestica HOM05D004547 ORTHO05D005133 1.3e-192 677.6 447 81.2
FAN10G1756 Fragaria x ananassa HOM05D004547 ORTHO05D005133 1.5e-172 610.9 441 73.7
COL.COLO4_14122 Corchorus olitorius HOM05D004547 ORTHO05D005133 1.2e-161 574.7 343 85.7
Solyc05g006950.4 Solanum lycopersicum HOM05D004547 ORTHO05D005133 4.7e-155 552.7 400 70.8
HPP92_005328 Vanilla planifolia HOM05D004547 ORTHO05D005133 1.3e-152 544.7 382 75.4
CDE04G0650 Ceratophyllum demersum HOM05D004547 ORTHO05D005133 7.8e-126 455.7 376 67.0
SHI14003 Sapria himalayana HOM05D004547 ORTHO05D000023 1.4e-122 444.9 341 68.0
BraA02t06300Z Brassica rapa HOM05D004547 ORTHO05D005133 2.0e-121 441.0 293 79.5
Oeu042559.1 Olea europaea HOM05D004547 ORTHO05D005133 7.1e-111 406.0 429 55.0
A10p09160 Brassica napus HOM05D004547 ORTHO05D005133 6.2e-107 392.9 235 81.3
BolC2t08183H Brassica oleracea HOM05D004547 ORTHO05D005133 3.1e-106 390.6 235 80.4
Nitab4.5_0019601g0010 Nicotiana tabacum HOM05D004547 ORTHO05D005133 9.0e-106 389.0 257 79.0
PRCOL_00005609 Prasinoderma coloniale HOM05D004547 ORTHO05D005133 1.4e-95 355.1 865 31.0
SEGI_24302 Sequoiadendron giganteum HOM05D004547 ORTHO05D005133 3.8e-80 303.9 211 70.6
Cre02.g086700 Chlamydomonas reinhardtii HOM05D004547 ORTHO05D005133 3.3e-76 290.8 861 27.5
SEGI_05738 Sequoiadendron giganteum HOM05D004547 ORTHO05D005133 5.2e-69 266.9 230 64.8
CDE04G2539 Ceratophyllum demersum HOM05D004547 ORTHO05D005133 2.0e-68 265.0 269 56.5
SEGI_08321 Sequoiadendron giganteum HOM05D004547 ORTHO05D005133 2.5e-63 248.1 200 63.5
Os06g0669600 Oryza sativa ssp. japonica HOM05D004547 ORTHO05D005133 2.6e-60 238.0 179 71.5
HPP92_005318 Vanilla planifolia HOM05D004547 ORTHO05D005133 2.6e-60 238.0 290 49.0
QL10p003704 Quercus lobata HOM05D004547 ORTHO05D005133 1.1e-55 222.6 213 64.3
Actinidia24695 Actinidia chinensis HOM05D004547 ORTHO05D005133 1.4e-53 215.7 183 62.3
A10p09220 Brassica napus HOM05D004547 ORTHO05D005133 7.0e-50 203.4 122 78.7
TPR.G196 Trifolium pratense HOM05D004547 ORTHO05D005133 4.0e-45 187.6 125 78.4
MD07G1253700 Malus domestica HOM05D004547 ORTHO05D005133 1.7e-43 182.2 105 91.4
BraA10t43007Z Brassica rapa HOM05D004547 ORTHO05D005133 5.0e-40 170.6 104 78.8
BraA10t42999Z Brassica rapa HOM05D004547 ORTHO05D005133 8.6e-40 169.9 104 78.8
BraA10t43002Z Brassica rapa HOM05D004547 ORTHO05D005133 5.2e-37 160.6 96 78.1
A10p09300 Brassica napus HOM05D004547 ORTHO05D005133 6.8e-37 160.2 96 80.2
TAR082G0001 Trochodendron aralioides HOM05D004547 ORTHO05D005133 1.9e-34 152.1 97 76.3
Sc14g0005510 Simmondsia chinensis HOM05D004547 ORTHO05D005133 9.2e-34 149.8 95 80.0
Psat7g163200 Pisum sativum HOM05D004547 ORTHO05D005133 6.0e-33 147.1 130 59.2
SEGI_13446 Sequoiadendron giganteum HOM05D004547 ORTHO05D005133 9.5e-31 139.8 95 72.6
Actinidia01052 Actinidia chinensis HOM05D004547 ORTHO05D005133 3.1e-29 134.8 95 74.7
CAN.G74.49 Capsicum annuum HOM05D004547 ORTHO05D005133 5.2e-29 134.0 234 38.5
FvH4_7g19100 Fragaria vesca HOM05D004547 ORTHO05D005133 2.7e-25 121.7 87 79.3
GSVIVG01036042001 Vitis vinifera HOM05D004547 ORTHO05D005133 2.5e-23 115.2 143 50.3
CAN.G280.11 Capsicum annuum HOM05D004547 ORTHO05D005133 2.1e-22 112.1 216 36.6
Nitab4.5_0004558g0010 Nicotiana tabacum HOM05D004547 ORTHO05D016189 1.8e-21 109.0 216 34.7
CAN.G689.6 Capsicum annuum HOM05D004547 ORTHO05D005133 6.8e-21 107.1 82 69.5
Duzib147G0620 Durio zibethinus HOM05D004547 ORTHO05D005133 8.9e-21 106.7 91 67.0
CAN.G903.1 Capsicum annuum HOM05D004547 ORTHO05D005133 1.2e-20 106.3 264 33.0
SEGI_29591 Sequoiadendron giganteum HOM05D004547 ORTHO05D005133 3.2e-18 98.2 99 43.4
Haze_23095 Corylus avellana HOM05D001506 ORTHO05D000455 5.4e-18 97.4 78 73.1
FAN06G3837 Fragaria x ananassa HOM05D004547 ORTHO05D005133 1.2e-17 96.3 72 73.6
Nitab4.5_0011021g0010 Nicotiana tabacum HOM05D001522 ORTHO05D016189 3.8e-11 74.7 158 35.4
CAN.G118.7 Capsicum annuum HOM05D004547 ORTHO05D005133 1.4e-10 72.8 58 65.5
Pp3c11_26770 Physcomitrium patens HOM05D004547 ORTHO05D005133 2.3e-08 65.5 67 50.7
CAN.G689.5 Capsicum annuum HOM05D004547 ORTHO05D005133 5.6e-07 60.8 54 55.6


User provided reference genes

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