Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc3.295 Carica papaya HOM05D005948 ORTHO05D007689 3.4e-103 378.3 181 100.0
TWI23G0886 Tripterygium wilfordii HOM05D005948 ORTHO05D007689 2.2e-25 119.8 96 62.5
Thecc.03G158700 Theobroma cacao HOM05D005948 ORTHO05D007689 6.4e-25 118.2 68 80.9
Duzib205G0588 Durio zibethinus HOM05D005948 ORTHO05D007689 1.4e-24 117.1 96 61.5
Potri.015G129300 Populus trichocarpa HOM05D005948 ORTHO05D007689 4.1e-24 115.5 98 60.2
QL09p019069 Quercus lobata HOM05D005948 ORTHO05D007689 7.0e-24 114.8 97 59.8
Manes.14G034200 Manihot esculenta HOM05D005948 ORTHO05D007689 1.2e-23 114.0 96 63.5
COL.COLO4_14151 Corchorus olitorius HOM05D005948 ORTHO05D007689 2.7e-23 112.8 68 77.9
MD07G1256400 Malus domestica HOM05D005948 ORTHO05D007689 7.8e-23 111.3 75 76.0
Atru.chr1.666 Acer truncatum HOM05D005948 ORTHO05D007689 1.3e-22 110.5 74 71.6
Atru.chr1.671 Acer truncatum HOM05D005948 ORTHO05D007689 1.3e-22 110.5 74 71.6
Gohir.A11G007600 Gossypium hirsutum HOM05D005948 ORTHO05D007689 3.0e-22 109.4 96 60.4
Gohir.D11G010266 Gossypium hirsutum HOM05D005948 ORTHO05D007689 3.0e-22 109.4 68 75.0
Gorai.007G008100 Gossypium raimondii HOM05D005948 ORTHO05D007689 3.0e-22 109.4 68 75.0
Ciclev10004402m.g Citrus clementina HOM05D005948 ORTHO05D007689 3.9e-22 109.0 74 73.0
ClCG05G007440 Citrullus lanatus HOM05D005948 ORTHO05D007689 1.5e-21 107.1 96 56.2
vmacro06779 Vaccinium macrocarpon HOM05D005948 ORTHO05D007689 3.3e-21 105.9 80 65.0
CsaV3_3G016260 Cucumis sativus L. HOM05D005948 ORTHO05D007689 4.3e-21 105.5 96 55.2
MELO3C006824.2 Cucumis melo HOM05D005948 ORTHO05D007689 5.6e-21 105.1 98 52.0
Actinidia25023 Actinidia chinensis HOM05D005948 ORTHO05D007689 9.5e-21 104.4 80 65.0
Lj8C39T8 Lonicera japonica HOM05D005948 ORTHO05D007689 9.5e-21 104.4 56 87.5
Hund11806 Selenicereus undatus HOM05D005948 ORTHO05D007689 1.2e-20 104.0 53 90.6
SGA_v2.0_scaffold543G52820 Striga asiatica HOM05D005948 ORTHO05D007689 1.6e-20 103.6 80 62.5
CiPaw.04G061500 Carya illinoinensis HOM05D005948 ORTHO05D007689 3.6e-20 102.4 52 92.3
A03p16120 Brassica napus HOM05D005948 ORTHO05D007689 6.2e-20 101.7 68 73.5
BraA03t10903Z Brassica rapa HOM05D005948 ORTHO05D007689 6.2e-20 101.7 68 73.5
AUR62035100 Chenopodium quinoa HOM05D005948 ORTHO05D007689 6.2e-20 101.7 53 88.7
Prupe.2G280500 Prunus persica HOM05D005948 ORTHO05D007689 1.1e-19 100.9 53 88.7
BcaB01g04169 Brassica carinata HOM05D005948 ORTHO05D007689 1.8e-19 100.1 68 72.1
BcaC01g06127 Brassica carinata HOM05D005948 ORTHO05D007689 1.8e-19 100.1 68 72.1
C03p18990 Brassica napus HOM05D005948 ORTHO05D007689 1.8e-19 100.1 68 72.1
BolC3t14288H Brassica oleracea HOM05D005948 ORTHO05D007689 1.8e-19 100.1 68 72.1
AUR62016181 Chenopodium quinoa HOM05D005948 ORTHO05D007689 1.8e-19 100.1 52 88.5
THA.LOC104811515 Tarenaya hassleriana HOM05D005948 ORTHO05D007689 1.8e-19 100.1 75 72.0
FvH4_7g27930 Fragaria vesca HOM05D005948 ORTHO05D007689 2.3e-19 99.8 67 71.6
FAN03G1032 Fragaria x ananassa HOM05D005948 ORTHO05D007689 2.3e-19 99.8 67 71.6
PGSC0003DMG401023000 Solanum tuberosum HOM05D005948 ORTHO05D007689 3.1e-19 99.4 58 81.0
Nitab4.5_0000072g0570 Nicotiana tabacum HOM05D005948 ORTHO05D007689 4.0e-19 99.0 58 79.3
Sed0017785 Sechium edule HOM05D005948 ORTHO05D007689 4.0e-19 99.0 96 52.1
Solyc03g083580.3 Solanum lycopersicum HOM05D005948 ORTHO05D007689 4.0e-19 99.0 58 79.3
FAN06G0529 Fragaria x ananassa HOM05D005948 ORTHO05D007689 5.2e-19 98.6 53 84.9
FAN06G2156 Fragaria x ananassa HOM05D005948 ORTHO05D007689 5.2e-19 98.6 53 84.9
Aa31LG3G7950 Aethionema arabicum HOM05D005948 ORTHO05D007689 6.8e-19 98.2 96 57.3
EL10Ac3g05815 Beta vulgaris HOM05D005948 ORTHO05D007689 6.8e-19 98.2 66 69.7
Nitab4.5_0001548g0060 Nicotiana tabacum HOM05D005948 ORTHO05D007689 6.8e-19 98.2 58 79.3
Thhalv10012823m.g Eutrema salsugineum HOM05D005948 ORTHO05D007689 8.9e-19 97.8 75 68.0
Rhsim03G0169500 Rhododendron simsii HOM05D005948 ORTHO05D007689 8.9e-19 97.8 81 60.5
Sopen03g023390 Solanum pennellii HOM05D005948 ORTHO05D007689 8.9e-19 97.8 58 79.3
AT5G51540 Arabidopsis thaliana HOM05D005948 ORTHO05D007689 1.2e-18 97.4 56 82.1
Aqoxy5G03938 Aquilegia oxysepala HOM05D005948 ORTHO05D007689 1.5e-18 97.1 76 60.5
FAN10G0255 Fragaria x ananassa HOM05D005948 ORTHO05D007689 1.5e-18 97.1 53 83.0
RcHm_v2.0_Chr1g0374891 Rosa chinensis HOM05D005948 ORTHO05D007689 5.8e-18 95.1 76 67.1
Migut.F00455 Erythranthe guttata HOM05D005948 ORTHO05D007689 7.5e-18 94.7 80 58.8
AL8G25840 Arabidopsis lyrata HOM05D005948 ORTHO05D007689 1.3e-17 94.0 99 54.5
GSVIVG01018572001 Vitis vinifera HOM05D005948 ORTHO05D007689 1.3e-17 94.0 53 84.9
DCAR_018091 Daucus carota HOM05D005948 ORTHO05D007689 2.2e-17 93.2 53 81.1
Ah.07g208030 Amaranthus hybridus HOM05D001737 ORTHO05D001735 2.9e-17 92.8 53 79.2
Ah.07g208040 Amaranthus hybridus HOM05D005948 ORTHO05D007689 3.7e-17 92.4 53 81.1
Ah.07g208140 Amaranthus hybridus HOM05D005948 ORTHO05D007689 1.4e-16 90.5 53 79.2
CAN.G152.16 Capsicum annuum HOM05D005948 ORTHO05D007689 1.4e-16 90.5 58 72.4
Cc02_g04060 Coffea canephora HOM05D005948 ORTHO05D007689 1.4e-16 90.5 53 77.4
Ca_14119_v3 Cicer arietinum L. HOM05D005948 ORTHO05D007689 1.9e-16 90.1 96 51.0
Glyma.04G117400 Glycine max HOM05D005948 ORTHO05D007689 1.9e-16 90.1 99 48.5
Lsat_1_v5_gn_8_9260 Lactuca sativa HOM05D005948 ORTHO05D007689 1.9e-16 90.1 71 64.8
SalBow4G1013 Salvia bowleyana HOM05D005948 ORTHO05D007689 2.4e-16 89.7 52 76.9
SalBow4G1780 Salvia bowleyana HOM05D005948 ORTHO05D007689 2.4e-16 89.7 52 76.9
TPR.G20847 Trifolium pratense HOM05D005948 ORTHO05D007689 3.2e-16 89.4 75 57.3
Medtr3g009160 Medicago truncatula HOM05D005948 ORTHO05D007689 4.1e-16 89.0 53 75.5
TAR375G0868 Trochodendron aralioides HOM05D005948 ORTHO05D007689 4.1e-16 89.0 96 52.1
Dinv22965 Davidia involucrata HOM05D005948 ORTHO05D007689 5.4e-16 88.6 54 74.1
unitig_46.g18766 Utricularia gibba HOM05D005948 ORTHO05D007689 1.6e-15 87.0 76 57.9
Psat5g230800 Pisum sativum HOM05D005948 ORTHO05D007689 2.1e-15 86.7 57 70.2
ECA233G5295 Erigeron canadensis HOM05D005948 ORTHO05D007689 4.6e-15 85.5 53 75.5
HanXRQChr08g0223861 Helianthus annuus HOM05D005948 ORTHO05D007689 4.6e-15 85.5 53 75.5
Ah.07g207990 Amaranthus hybridus HOM05D005948 ORTHO05D007689 1.0e-14 84.3 53 71.7
Lalb_Chr18g0048781 Lupinus albus HOM05D005948 ORTHO05D007689 1.0e-14 84.3 53 73.6
VMungo1080G1213 Vigna mungo HOM05D005948 ORTHO05D007689 1.0e-14 84.3 80 56.2
Os06g0686500 Oryza sativa ssp. japonica HOM05D005948 ORTHO05D007689 1.7e-14 83.6 65 66.2
CDE02G2841 Ceratophyllum demersum HOM05D005948 ORTHO05D007689 2.3e-14 83.2 69 60.9
Lj3g0024133 Lotus japonicus HOM05D005948 ORTHO05D007689 2.3e-14 83.2 96 46.9
PSO063G6398 Papaver somniferum HOM05D005948 ORTHO05D007689 2.3e-14 83.2 53 73.6
Oeu021716.2 Olea europaea HOM05D005948 ORTHO05D007689 3.9e-14 82.4 53 71.7
Phvul.005G006700 Phaseolus vulgaris HOM05D005948 ORTHO05D007689 1.1e-13 80.9 55 67.3
arahy.Tifrunner.gnm1.ann1.1LKT55 Arachis hypogaea HOM05D005948 ORTHO05D007689 4.3e-13 79.0 53 64.2
arahy.Tifrunner.gnm1.ann1.UP65TY Arachis hypogaea HOM05D005948 ORTHO05D007689 9.6e-13 77.8 52 65.4
ATR0115G032 Amborella trichopoda HOM05D005948 ORTHO05D007689 2.1e-12 76.6 55 65.5
Zm00001eb225650 Zea mays HOM05D005948 ORTHO05D007689 3.6e-12 75.9 53 67.9
PGR142G1204 Punica granatum HOM05D005948 ORTHO05D007689 6.2e-12 75.1 73 54.8
HPP92_003266 Vanilla planifolia HOM05D005948 ORTHO05D007689 6.2e-12 75.1 57 61.4
SEGI_04204 Sequoiadendron giganteum HOM05D005948 ORTHO05D007689 4.4e-10 68.9 53 60.4
Cfa008218 Carpinus fangiana HOM05D005948 ORTHO05D007689 7.6e-10 68.2 68 51.5
AagrBONN_evm.TU.Sc2ySwM_228.3357 Anthoceros agrestis HOM05D005948 ORTHO05D007689 2.4e-08 63.2 52 53.8
Pp3c16_10250 Physcomitrium patens HOM05D005948 ORTHO05D007689 4.6e-07 58.9 52 50.0
Mapoly0001s0567 Marchantia polymorpha HOM05D005948 ORTHO05D007689 1.0e-06 57.8 54 44.4
SMO172G0186 Selaginella moellendorffii HOM05D005948 ORTHO05D007689 2.3e-06 56.6 54 42.6


User provided reference genes

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