Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc3.236 Carica papaya HOM05D004085 ORTHO05D005189 1.3e-190 669.5 326 100.0
Gorai.007G040300 Gossypium raimondii HOM05D004085 ORTHO05D005189 4.5e-130 468.4 341 68.0
Gohir.D11G037500 Gossypium hirsutum HOM05D004085 ORTHO05D005189 2.9e-129 465.7 339 68.1
Gohir.A11G034100 Gossypium hirsutum HOM05D004085 ORTHO05D005189 7.2e-128 461.1 326 69.9
DCAR_011575 Daucus carota HOM05D004085 ORTHO05D005189 4.1e-123 445.3 338 65.1
Potri.015G048700 Populus trichocarpa HOM05D004085 ORTHO05D005189 7.0e-123 444.5 338 66.0
PGSC0003DMG402004079 Solanum tuberosum HOM05D004085 ORTHO05D005189 7.0e-123 444.5 337 64.7
Dinv07974 Davidia involucrata HOM05D004085 ORTHO05D005189 9.1e-123 444.1 346 66.5
Sabra15G0078600 Salix brachista HOM05D004085 ORTHO05D005189 2.0e-122 443.0 337 65.9
Hma1.2p1_0595F.1_g186285 Hydrangea macrophylla HOM05D004085 ORTHO05D005189 4.5e-122 441.8 336 65.8
Solyc06g069390.4 Solanum lycopersicum HOM05D004085 ORTHO05D005189 4.5e-122 441.8 337 64.4
TAR629G1999 Trochodendron aralioides HOM05D004085 ORTHO05D005189 4.5e-122 441.8 337 65.3
PGR044G1995 Punica granatum HOM05D004085 ORTHO05D005189 1.0e-121 440.7 344 65.4
CSS0028863 Camellia sinensis var. sinensis HOM05D004085 ORTHO05D005189 1.3e-121 440.3 336 66.1
CAN.G587.59 Capsicum annuum HOM05D004085 ORTHO05D005189 2.3e-121 439.5 337 64.4
Sopen06g026660 Solanum pennellii HOM05D004085 ORTHO05D005189 2.9e-121 439.1 337 63.8
GSVIVG01008152001 Vitis vinifera HOM05D004085 ORTHO05D005189 5.0e-121 438.3 336 64.0
COL.COLO4_27493 Corchorus olitorius HOM05D004085 ORTHO05D005189 6.5e-121 438.0 314 68.2
Manes.06G081100 Manihot esculenta HOM05D004085 ORTHO05D005189 1.9e-120 436.4 340 66.2
Nitab4.5_0002863g0020 Nicotiana tabacum HOM05D004085 ORTHO05D005189 9.5e-120 434.1 337 64.1
Migut.D01616 Erythranthe guttata HOM05D004085 ORTHO05D005189 1.2e-119 433.7 337 63.2
Aqoxy3G03746 Aquilegia oxysepala HOM05D004085 ORTHO05D005189 6.8e-118 427.9 336 61.9
PSO063G3410 Papaver somniferum HOM05D004085 ORTHO05D005189 6.8e-118 427.9 338 61.8
PSO409G0049 Papaver somniferum HOM05D004085 ORTHO05D005189 6.8e-118 427.9 338 61.5
Nn4g23533 Nelumbo nucifera HOM05D004085 ORTHO05D005189 5.7e-117 424.9 336 61.0
Nitab4.5_0002449g0030 Nicotiana tabacum HOM05D004085 ORTHO05D005189 7.5e-117 424.5 322 65.8
Dinv34021 Davidia involucrata HOM05D004085 ORTHO05D005189 9.8e-117 424.1 337 61.7
Lsat_1_v5_gn_5_23401 Lactuca sativa HOM05D004085 ORTHO05D005189 6.3e-116 421.4 337 62.9
vmacro10475 Vaccinium macrocarpon HOM05D004085 ORTHO05D005189 1.4e-115 420.2 337 60.8
Rhsim09G0122200 Rhododendron simsii HOM05D004085 ORTHO05D005189 2.7e-114 416.0 337 60.5
HanXRQChr05g0157451 Helianthus annuus HOM05D004085 ORTHO05D005189 1.7e-113 413.3 337 62.6
Actinidia07768 Actinidia chinensis HOM05D004085 ORTHO05D005189 8.6e-113 411.0 342 60.5
ECA246G2852 Erigeron canadensis HOM05D004085 ORTHO05D005189 1.1e-112 410.6 337 61.4
Peaxi162Scf00013g00834 Petunia axillaris HOM05D004085 ORTHO05D005189 1.5e-112 410.2 329 62.6
CSS0006421 Camellia sinensis var. sinensis HOM05D004085 ORTHO05D005189 7.3e-112 407.9 336 61.9
Eucgr.J01102 Eucalyptus grandis HOM05D004085 ORTHO05D005189 3.6e-111 405.6 336 58.3
Hma1.2p1_0428F.1_g150850 Hydrangea macrophylla HOM05D004085 ORTHO05D005189 3.6e-111 405.6 338 60.1
CANSAT64G3016 Cannabis sativa HOM05D004085 ORTHO05D005189 1.4e-110 403.7 337 59.1
Atru.chr11.1559 Acer truncatum HOM05D004085 ORTHO05D005189 3.0e-110 402.5 336 57.7
CsaV3_6G033900 Cucumis sativus L. HOM05D004085 ORTHO05D005189 4.0e-110 402.1 337 58.5
Duzib251G0046 Durio zibethinus HOM05D004085 ORTHO05D005189 6.8e-110 401.4 337 59.1
TWI75G0426 Tripterygium wilfordii HOM05D004085 ORTHO05D005189 6.8e-110 401.4 338 58.9
Lj3A1027G87 Lonicera japonica HOM05D004085 ORTHO05D005189 8.9e-110 401.0 381 53.0
Peaxi162Scf00873g00113 Petunia axillaris HOM05D004085 ORTHO05D005189 8.9e-110 401.0 339 58.1
ATR0691G189 Amborella trichopoda HOM05D004085 ORTHO05D005189 1.2e-109 400.6 337 60.5
DCAR_007209 Daucus carota HOM05D004085 ORTHO05D005189 1.5e-109 400.2 337 57.3
Nitab4.5_0001071g0010 Nicotiana tabacum HOM05D004085 ORTHO05D005189 1.5e-109 400.2 337 57.6
MSTRG.7728 Avicennia marina HOM05D004085 ORTHO05D005189 2.0e-109 399.8 339 59.9
Sopen04g001280 Solanum pennellii HOM05D004085 ORTHO05D005189 2.6e-109 399.4 337 57.3
ClCG08G010600 Citrullus lanatus HOM05D004085 ORTHO05D005189 4.4e-109 398.7 337 57.6
MELO3C011402.2 Cucumis melo HOM05D004085 ORTHO05D005189 9.8e-109 397.5 337 57.6
MD16G1055900 Malus domestica HOM05D004085 ORTHO05D005189 9.8e-109 397.5 343 59.2
PGSC0003DMG400001937 Solanum tuberosum HOM05D004085 ORTHO05D005189 1.3e-108 397.1 337 57.3
CiPaw.05G122000 Carya illinoinensis HOM05D004085 ORTHO05D005189 1.7e-108 396.7 337 57.3
Prupe.1G293400 Prunus persica HOM05D004085 ORTHO05D005189 2.2e-108 396.4 340 58.2
Thecc.02G322800 Theobroma cacao HOM05D004085 ORTHO05D005189 1.1e-107 394.0 337 58.2
Cc11_g11560 Coffea canephora HOM05D004085 ORTHO05D005189 1.4e-107 393.7 339 57.8
Ciclev10032152m.g Citrus clementina HOM05D004085 ORTHO05D005189 3.2e-107 392.5 337 57.0
SGA_v2.0_scaffold36G14490 Striga asiatica HOM05D004085 ORTHO05D005189 5.4e-107 391.7 324 59.3
Phvul.003G280600 Phaseolus vulgaris HOM05D004085 ORTHO05D005189 7.0e-107 391.3 337 57.6
Manes.05G115200 Manihot esculenta HOM05D004085 ORTHO05D005189 1.6e-106 390.2 336 56.2
Nitab4.5_0000591g0050 Nicotiana tabacum HOM05D004085 ORTHO05D005189 1.6e-106 390.2 335 56.4
MSTRG.779 Avicennia marina HOM05D004085 ORTHO05D005189 2.7e-106 389.4 339 57.2
MD13G1056600 Malus domestica HOM05D004085 ORTHO05D005189 4.6e-106 388.7 343 57.7
Medtr8g066120 Medicago truncatula HOM05D004085 ORTHO05D005189 2.3e-105 386.3 339 56.3
Sed0007813 Sechium edule HOM05D004085 ORTHO05D005189 2.3e-105 386.3 341 56.9
THA.LOC104805212 Tarenaya hassleriana HOM05D004085 ORTHO05D005189 2.3e-105 386.3 339 55.8
Cfa008850 Carpinus fangiana HOM05D004085 ORTHO05D005189 3.0e-105 386.0 324 59.3
Haze_11859 Corylus avellana HOM05D004085 ORTHO05D005189 5.0e-105 385.2 390 51.8
Lj5A137T62 Lonicera japonica HOM05D004085 ORTHO05D005189 8.6e-105 384.4 296 67.6
ECA233G2807 Erigeron canadensis HOM05D004085 ORTHO05D005189 1.5e-104 383.6 336 57.1
CDE01G0369 Ceratophyllum demersum HOM05D004085 ORTHO05D005189 1.9e-104 383.3 337 56.1
arahy.Tifrunner.gnm1.ann1.34XV9Z Arachis hypogaea HOM05D004085 ORTHO05D005189 4.3e-104 382.1 337 56.4
FAN12G2772 Fragaria x ananassa HOM05D004085 ORTHO05D005189 4.3e-104 382.1 332 55.7
Gohir.A03G106500 Gossypium hirsutum HOM05D004085 ORTHO05D005189 4.3e-104 382.1 340 55.6
Glyma.05G183800 Glycine max HOM05D004085 ORTHO05D005189 7.3e-104 381.3 337 55.8
PGR102G0161 Punica granatum HOM05D004085 ORTHO05D005189 7.3e-104 381.3 336 56.0
VMungo0251G3520 Vigna mungo HOM05D004085 ORTHO05D005189 1.2e-103 380.6 359 54.3
Lalb_Chr20g0117031 Lupinus albus HOM05D004085 ORTHO05D005189 2.8e-103 379.4 335 56.7
Psat4g122760 Pisum sativum HOM05D004085 ORTHO05D005189 3.6e-103 379.0 339 55.5
Ca_22870_v3 Cicer arietinum L. HOM05D004085 ORTHO05D005189 4.7e-103 378.6 341 55.7
Gohir.D02G131700 Gossypium hirsutum HOM05D004085 ORTHO05D005189 4.7e-103 378.6 340 55.3
Gorai.005G147600 Gossypium raimondii HOM05D004085 ORTHO05D005189 6.2e-103 378.3 340 55.3
SalBow2G2246 Salvia bowleyana HOM05D004085 ORTHO05D005189 8.0e-103 377.9 339 55.2
Mapoly0007s0171 Marchantia polymorpha HOM05D004085 ORTHO05D005189 1.4e-102 377.1 345 55.7
Psat4g118760 Pisum sativum HOM05D004085 ORTHO05D005189 1.4e-102 377.1 338 55.6
Ah.03g138610 Amaranthus hybridus HOM05D004085 ORTHO05D005189 2.3e-102 376.3 336 55.7
BcaC06g31165 Brassica carinata HOM05D004085 ORTHO05D005189 2.3e-102 376.3 338 55.6
Carub.0005s0294 Capsella rubella HOM05D004085 ORTHO05D005189 3.1e-102 375.9 338 55.3
FAN22G1834 Fragaria x ananassa HOM05D004085 ORTHO05D005189 3.1e-102 375.9 332 55.1
Zm00001eb276680 Zea mays HOM05D004085 ORTHO05D005189 4.0e-102 375.6 340 57.1
HanXRQChr12g0365061 Helianthus annuus HOM05D004085 ORTHO05D005189 6.8e-102 374.8 336 55.7
RcHm_v2.0_Chr4g0437351 Rosa chinensis HOM05D004085 ORTHO05D005189 1.2e-101 374.0 335 54.3
Cpa.g.sc1.168 Carica papaya HOM05D004085 ORTHO05D005189 1.5e-101 373.6 338 54.4
Sc14g0007770 Simmondsia chinensis HOM05D004085 ORTHO05D005189 2.6e-101 372.9 338 55.3
AL5G13590 Arabidopsis lyrata HOM05D004085 ORTHO05D005189 3.4e-101 372.5 338 54.7
Thhalv10004640m.g Eutrema salsugineum HOM05D004085 ORTHO05D005189 3.4e-101 372.5 338 55.3
Aa31LG2G6920 Aethionema arabicum HOM05D004085 ORTHO05D005189 4.4e-101 372.1 352 52.8
AL3G42500 Arabidopsis lyrata HOM05D004085 ORTHO05D005189 7.5e-101 371.3 337 54.9
AT2G03800 Arabidopsis thaliana HOM05D004085 ORTHO05D005189 9.8e-101 370.9 338 54.7
Lj4g0023791 Lotus japonicus HOM05D004085 ORTHO05D005189 1.3e-100 370.5 337 54.9
Sp2g14620 Schrenkiella parvula HOM05D004085 ORTHO05D005189 2.2e-100 369.8 338 54.7
A02p33630 Brassica napus HOM05D004085 ORTHO05D005189 2.9e-100 369.4 338 54.7
BcaC03g17242 Brassica carinata HOM05D004085 ORTHO05D005189 3.7e-100 369.0 338 54.7
BcaC06g31143 Brassica carinata HOM05D004085 ORTHO05D005189 4.9e-100 368.6 338 54.7
A06p42850 Brassica napus HOM05D004085 ORTHO05D005189 4.9e-100 368.6 338 54.7
BolC2t11263H Brassica oleracea HOM05D004085 ORTHO05D005189 1.1e-99 367.5 338 54.4
BraA06t27197Z Brassica rapa HOM05D004085 ORTHO05D005189 1.1e-99 367.5 338 54.7
C07p34240 Brassica napus HOM05D004085 ORTHO05D005189 1.4e-99 367.1 338 54.4
BolC7t43952H Brassica oleracea HOM05D004085 ORTHO05D005189 1.4e-99 367.1 338 54.4
BcaB07g30279 Brassica carinata HOM05D004085 ORTHO05D005189 1.9e-99 366.7 338 55.3
C02p51780 Brassica napus HOM05D004085 ORTHO05D005189 2.4e-99 366.3 338 54.4
CARHR146210 Cardamine hirsuta HOM05D004085 ORTHO05D005189 2.4e-99 366.3 338 54.1
Lalb_Chr15g0084991 Lupinus albus HOM05D004085 ORTHO05D005189 3.2e-99 365.9 337 54.0
CSS0016924 Camellia sinensis var. sinensis HOM05D004085 ORTHO05D005189 2.7e-98 362.8 337 53.4
Os08g0339200 Oryza sativa ssp. japonica HOM05D004085 ORTHO05D005189 2.7e-98 362.8 337 55.8
Hund25155 Selenicereus undatus HOM05D004085 ORTHO05D005189 3.9e-97 359.0 389 48.1
Duzib248G1362 Durio zibethinus HOM05D004085 ORTHO05D005189 8.6e-97 357.8 337 53.7
Eucgr.K02549 Eucalyptus grandis HOM05D004085 ORTHO05D005189 8.6e-97 357.8 322 58.1
MBI14_g08107_MAGBIO Magnolia biondii HOM05D004085 ORTHO05D005189 1.9e-96 356.7 291 61.9
CSS0030921 Camellia sinensis var. sinensis HOM05D004085 ORTHO05D005189 9.5e-96 354.4 338 52.7
Lsat_1_v5_gn_8_36601 Lactuca sativa HOM05D004085 ORTHO05D005189 1.4e-94 350.5 336 54.5
FAN07G2517 Fragaria x ananassa HOM05D004085 ORTHO05D005189 8.3e-92 341.3 421 44.9
AUR62003058 Chenopodium quinoa HOM05D004085 ORTHO05D005189 7.1e-91 338.2 337 50.1
AUR62007873 Chenopodium quinoa HOM05D004085 ORTHO05D005189 1.2e-90 337.4 337 50.1
EL10Ac6g14673 Beta vulgaris HOM05D004085 ORTHO05D005189 7.8e-90 334.7 357 49.3
HPP92_003714 Vanilla planifolia HOM05D004085 ORTHO05D005189 1.3e-89 334.0 310 54.5
AagrBONN_evm.TU.Sc2ySwM_344.2928 Anthoceros agrestis HOM05D004085 ORTHO05D005189 1.7e-89 333.6 338 50.3
Migut.L01162 Erythranthe guttata HOM05D004085 ORTHO05D005189 3.9e-89 332.4 306 54.9
Pp3c4_31680 Physcomitrium patens HOM05D004085 ORTHO05D005189 3.9e-89 332.4 339 49.3
Pp3c3_10070 Physcomitrium patens HOM05D004085 ORTHO05D005189 8.6e-89 331.3 329 52.0
SMO146G0350 Selaginella moellendorffii HOM05D004085 ORTHO05D005189 6.2e-87 325.1 344 49.4
SHI14335 Sapria himalayana HOM05D004085 ORTHO05D005189 7.6e-85 318.2 355 47.3
Oeu045347.1 Olea europaea HOM05D004085 ORTHO05D005189 1.3e-84 317.4 219 69.9
MD16G1055500 Malus domestica HOM05D004085 ORTHO05D005189 1.9e-83 313.5 319 52.4
PGSC0003DMG401004079 Solanum tuberosum HOM05D004085 ORTHO05D005189 1.9e-80 303.5 192 75.5
COL.COLO4_27802 Corchorus olitorius HOM05D004085 ORTHO05D005189 9.0e-78 294.7 338 48.8
Nn3g17533 Nelumbo nucifera HOM05D004085 ORTHO05D005189 7.1e-75 285.0 300 51.3
CBR_g34346 Chara braunii HOM05D004085 ORTHO05D005189 7.8e-74 281.6 382 40.8
FvH4_4g29300 Fragaria vesca HOM05D004085 ORTHO05D005189 6.9e-70 268.5 219 59.4
BraA02t08382Z Brassica rapa HOM05D004085 ORTHO05D005189 2.2e-68 263.5 222 59.0
arahy.Tifrunner.gnm1.ann1.A9XC2E Arachis hypogaea HOM05D004085 ORTHO05D005189 2.1e-66 256.9 181 68.5
CSS0002590 Camellia sinensis var. sinensis HOM05D004085 ORTHO05D005189 1.8e-65 253.8 312 49.0
Oeu045348.1 Olea europaea HOM05D004085 ORTHO05D005189 7.9e-58 228.4 144 74.3
Os09g0248000 Oryza sativa ssp. japonica HOM05D004085 ORTHO05D005189 1.0e-57 228.0 165 65.5
C07p34190 Brassica napus HOM05D004085 ORTHO05D005189 9.6e-56 221.5 189 58.7
unitig_22.g6891 Utricularia gibba HOM05D004085 ORTHO05D005189 1.8e-54 217.2 238 46.2
TPR.G27985 Trifolium pratense HOM05D004085 ORTHO05D005189 3.2e-51 206.5 151 64.9
MBI10_g36395_MAGBIO Magnolia biondii HOM05D004085 ORTHO05D005189 1.1e-40 171.4 167 51.5
Peaxi162Scf00098g00096 Petunia axillaris HOM05D004085 ORTHO05D005189 1.8e-38 164.1 128 60.2
Solyc04g005300.4 Solanum lycopersicum HOM05D004085 ORTHO05D005189 2.0e-37 160.6 138 52.9
SEGI_05680 Sequoiadendron giganteum HOM05D004085 ORTHO05D005189 1.7e-31 141.0 111 58.6
Duzib068G1264 Durio zibethinus HOM05D004085 ORTHO05D005189 1.7e-28 131.0 68 86.8
BolC7t43946H Brassica oleracea HOM05D004085 ORTHO05D005189 5.0e-28 129.4 118 52.5
Thecc.03G108100 Theobroma cacao HOM05D004085 ORTHO05D026373 3.9e-25 119.8 88 63.6
TPR.G3316 Trifolium pratense HOM05D004085 ORTHO05D026373 6.7e-25 119.0 98 55.1
Lj5A720T31 Lonicera japonica HOM05D004085 ORTHO05D026373 4.4e-24 116.3 155 45.2
TPR.G40588 Trifolium pratense HOM05D004085 ORTHO05D005189 4.4e-24 116.3 68 73.5
BolC7t43934H Brassica oleracea HOM05D004085 ORTHO05D005189 2.8e-23 113.6 104 55.8
HPP92_003722 Vanilla planifolia HOM05D004085 ORTHO05D005189 6.3e-23 112.5 210 36.7
Lj3C737G8 Lonicera japonica HOM05D004085 ORTHO05D005189 1.8e-22 110.9 75 66.7
Actinidia04797 Actinidia chinensis HOM05D004085 ORTHO05D026373 2.6e-21 107.1 74 68.9
SEGI_34269 Sequoiadendron giganteum HOM05D004085 ORTHO05D005189 2.8e-15 87.0 82 52.4
MD05G1127700 Malus domestica HOM05D004085 ORTHO05D005189 6.3e-15 85.9 83 55.4
BcaC06g31148 Brassica carinata HOM05D004085 ORTHO05D005189 1.5e-11 74.7 72 50.0
Eucgr.B03119 Eucalyptus grandis HOM05D004085 ORTHO05D195170 5.7e-08 62.8 56 55.4
Ciclev10024148m.g Citrus clementina HOM05D004085 ORTHO05D043374 9.8e-08 62.0 45 60.0


User provided reference genes

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