Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc3.232 Carica papaya HOM05D005253 ORTHO05D006058 2.8e-154 548.9 342 100.0
Dinv38642 Davidia involucrata HOM05D005253 ORTHO05D006058 2.9e-95 352.8 345 64.3
GSVIVG01008154001 Vitis vinifera HOM05D005253 ORTHO05D006058 5.9e-88 328.6 346 60.1
TWI60G1362 Tripterygium wilfordii HOM05D005253 ORTHO05D006058 8.5e-87 324.7 344 60.5
TWI81G0215 Tripterygium wilfordii HOM05D005253 ORTHO05D006058 1.4e-81 307.4 344 58.4
Ciclev10020920m.g Citrus clementina HOM05D005253 ORTHO05D006058 5.3e-81 305.4 347 57.6
Duzib205G1609 Durio zibethinus HOM05D005253 ORTHO05D006058 5.0e-79 298.9 344 53.2
Rhsim08G0142100 Rhododendron simsii HOM05D005253 ORTHO05D006058 6.5e-79 298.5 346 55.8
Haze_18511 Corylus avellana HOM05D005253 ORTHO05D006058 1.1e-78 297.7 348 58.0
Gohir.D07G063700 Gossypium hirsutum HOM05D005253 ORTHO05D006058 1.9e-78 297.0 350 53.7
Cfa017731 Carpinus fangiana HOM05D005253 ORTHO05D006058 3.2e-78 296.2 347 57.3
MD14G1216600 Malus domestica HOM05D005253 ORTHO05D006058 5.5e-78 295.4 339 56.3
Gorai.001G067300 Gossypium raimondii HOM05D005253 ORTHO05D006058 3.9e-76 289.3 350 54.9
Prupe.5G210000 Prunus persica HOM05D005253 ORTHO05D006058 5.2e-76 288.9 340 56.5
Duzib068G0534 Durio zibethinus HOM05D005253 ORTHO05D006058 8.8e-76 288.1 345 56.5
Glyma.05G018200 Glycine max HOM05D005253 ORTHO05D006058 1.1e-75 287.7 339 55.5
vmacro17641 Vaccinium macrocarpon HOM05D005253 ORTHO05D006058 1.5e-75 287.3 369 51.5
Gohir.A09G243900 Gossypium hirsutum HOM05D005253 ORTHO05D006058 4.4e-75 285.8 345 52.8
THA.LOC104818357 Tarenaya hassleriana HOM05D005253 ORTHO05D006058 4.4e-75 285.8 341 54.0
Potri.004G107000 Populus trichocarpa HOM05D005253 ORTHO05D006058 3.7e-74 282.7 348 53.4
MD06G1205700 Malus domestica HOM05D005253 ORTHO05D006058 1.4e-73 280.8 339 54.6
Gorai.006G268700 Gossypium raimondii HOM05D005253 ORTHO05D006058 3.1e-73 279.6 345 54.5
Glyma.17G081700 Glycine max HOM05D005253 ORTHO05D006058 1.2e-72 277.7 339 54.3
CSS0036905 Camellia sinensis var. sinensis HOM05D005253 ORTHO05D006058 5.0e-71 272.3 345 54.5
Gohir.A07G058832 Gossypium hirsutum HOM05D005253 ORTHO05D006058 6.5e-71 271.9 350 52.0
ClCG04G011560 Citrullus lanatus HOM05D005253 ORTHO05D006058 3.2e-70 269.6 351 56.7
Dinv17459 Davidia involucrata HOM05D005253 ORTHO05D006058 3.2e-70 269.6 324 57.4
TAR371G0033 Trochodendron aralioides HOM05D005253 ORTHO05D006058 7.5e-67 258.5 347 50.7
Manes.14G089100 Manihot esculenta HOM05D005253 ORTHO05D006058 1.7e-66 257.3 346 51.4
Thhalv10014100m.g Eutrema salsugineum HOM05D005253 ORTHO05D006058 2.2e-66 256.9 343 49.0
Sed0023471 Sechium edule HOM05D005253 ORTHO05D006058 2.2e-66 256.9 351 51.0
CANSAT80G0823 Cannabis sativa HOM05D005253 ORTHO05D006058 1.4e-65 254.2 346 48.6
Atru.chr4.1592 Acer truncatum HOM05D005253 ORTHO05D006058 3.1e-65 253.1 345 58.6
Gohir.D09G244600 Gossypium hirsutum HOM05D005253 ORTHO05D006058 9.1e-65 251.5 345 48.4
Lalb_Chr13g0302681 Lupinus albus HOM05D005253 ORTHO05D006058 1.2e-64 251.1 333 52.9
Phvul.003G182200 Phaseolus vulgaris HOM05D005253 ORTHO05D006058 1.2e-64 251.1 337 51.3
Medtr4g109960 Medicago truncatula HOM05D005253 ORTHO05D006058 2.0e-64 250.4 340 47.6
COL.COLO4_27496 Corchorus olitorius HOM05D005253 ORTHO05D006058 2.9e-63 246.5 346 47.4
VMungo1215G3162 Vigna mungo HOM05D005253 ORTHO05D006058 2.9e-63 246.5 337 51.3
arahy.Tifrunner.gnm1.ann1.TSF3K2 Arachis hypogaea HOM05D005253 ORTHO05D006058 5.0e-63 245.7 344 50.3
MELO3C002054.2 Cucumis melo HOM05D005253 ORTHO05D006058 5.0e-63 245.7 356 53.1
FAN08G1625 Fragaria x ananassa HOM05D005253 ORTHO05D006058 8.5e-63 245.0 342 52.6
FvH4_5g13401 Fragaria vesca HOM05D005253 ORTHO05D006058 1.1e-62 244.6 342 53.5
Nitab4.5_0002467g0110 Nicotiana tabacum HOM05D005253 ORTHO05D006058 1.5e-62 244.2 352 51.7
MSTRG.9581 Avicennia marina HOM05D005253 ORTHO05D006058 1.9e-62 243.8 348 54.0
AL6G18490 Arabidopsis lyrata HOM05D005253 ORTHO05D006058 5.5e-62 242.3 340 46.5
Hma1.2p1_0060F.1_g032740 Hydrangea macrophylla HOM05D005253 ORTHO05D006058 9.4e-62 241.5 382 44.5
Lj4g0025893 Lotus japonicus HOM05D005253 ORTHO05D006058 1.6e-61 240.7 342 48.2
TPR.G1989 Trifolium pratense HOM05D005253 ORTHO05D006058 1.6e-61 240.7 340 46.8
FAN13G1214 Fragaria x ananassa HOM05D005253 ORTHO05D006058 2.1e-61 240.4 342 52.9
Peaxi162Scf00017g03254 Petunia axillaris HOM05D005253 ORTHO05D006058 2.7e-61 240.0 353 50.7
PSO017G7367 Papaver somniferum HOM05D005253 ORTHO05D006058 3.6e-61 239.6 343 45.2
RcHm_v2.0_Chr7g0183731 Rosa chinensis HOM05D005253 ORTHO05D006058 4.7e-61 239.2 343 52.2
Solyc03g114760.3 Solanum lycopersicum HOM05D005253 ORTHO05D006058 4.7e-61 239.2 351 52.1
MBI14_g08108_MAGBIO Magnolia biondii HOM05D005253 ORTHO05D006058 6.1e-61 238.8 348 49.4
Nitab4.5_0005994g0050 Nicotiana tabacum HOM05D005253 ORTHO05D006058 6.1e-61 238.8 347 51.3
arahy.Tifrunner.gnm1.ann1.399KXC Arachis hypogaea HOM05D005253 ORTHO05D006058 4.0e-60 236.1 344 49.4
AT5G08120 Arabidopsis thaliana HOM05D005253 ORTHO05D006058 6.8e-60 235.3 340 44.7
FAN18G4071 Fragaria x ananassa HOM05D005253 ORTHO05D006058 8.8e-60 235.0 358 51.1
Lsat_1_v5_gn_5_23380 Lactuca sativa HOM05D005253 ORTHO05D006058 8.8e-60 235.0 344 50.0
CARHR205070 Cardamine hirsuta HOM05D005253 ORTHO05D006058 1.2e-59 234.6 338 49.7
PSO478G2666 Papaver somniferum HOM05D005253 ORTHO05D006058 1.2e-59 234.6 344 48.5
Sopen03g033840 Solanum pennellii HOM05D005253 ORTHO05D006058 9.8e-59 231.5 351 51.3
Ca_21755_v3 Cicer arietinum L. HOM05D005253 ORTHO05D006058 1.3e-58 231.1 340 53.5
Nitab4.5_0002041g0040 Nicotiana tabacum HOM05D005253 ORTHO05D006058 8.3e-58 228.4 356 48.3
TPR.G2086 Trifolium pratense HOM05D005253 ORTHO05D006058 1.1e-57 228.0 309 46.9
PGSC0003DMG400024524 Solanum tuberosum HOM05D005253 ORTHO05D006058 1.4e-57 227.6 351 51.0
Manes.06G080800 Manihot esculenta HOM05D005253 ORTHO05D006058 9.1e-57 224.9 343 49.6
PGR044G0085 Punica granatum HOM05D005253 ORTHO05D006058 9.1e-57 224.9 345 48.4
Eucgr.K02550 Eucalyptus grandis HOM05D005253 ORTHO05D006058 4.5e-56 222.6 257 58.8
Sabra04G0074900 Salix brachista HOM05D005253 ORTHO05D006058 5.9e-56 222.2 281 59.8
Nn3g17535 Nelumbo nucifera HOM05D005253 ORTHO05D006058 7.7e-56 221.9 345 47.8
QL10p020742 Quercus lobata HOM05D005253 ORTHO05D006058 2.3e-55 220.3 515 37.9
BraA10t44904Z Brassica rapa HOM05D005253 ORTHO05D006058 1.1e-54 218.0 338 43.2
Cc04_g08280 Coffea canephora HOM05D005253 ORTHO05D006058 2.5e-54 216.9 353 43.9
BcaB08g37285 Brassica carinata HOM05D005253 ORTHO05D006058 7.2e-54 215.3 338 44.1
C09p68830 Brassica napus HOM05D005253 ORTHO05D006058 7.2e-54 215.3 338 44.1
EL10Ac5g11189 Beta vulgaris HOM05D005253 ORTHO05D006058 9.5e-54 214.9 298 50.3
SGA_v2.0_scaffold65G22104 Striga asiatica HOM05D005253 ORTHO05D006058 1.2e-53 214.5 346 47.1
ECA246G0831 Erigeron canadensis HOM05D005253 ORTHO05D006058 1.6e-53 214.2 343 46.1
Aqoxy3G03749 Aquilegia oxysepala HOM05D005253 ORTHO05D006058 1.0e-52 211.5 341 46.0
Hund09956 Selenicereus undatus HOM05D005253 ORTHO05D006058 1.0e-52 211.5 339 47.8
Aa31LG3G18420 Aethionema arabicum HOM05D005253 ORTHO05D006058 3.0e-52 209.9 342 50.0
AUR62039667 Chenopodium quinoa HOM05D005253 ORTHO05D006058 3.0e-52 209.9 297 50.5
CsaV3_1G006260 Cucumis sativus L. HOM05D005253 ORTHO05D006058 4.0e-52 209.5 354 49.7
Peaxi162Scf00365g00114 Petunia axillaris HOM05D005253 ORTHO05D006058 1.2e-51 208.0 348 41.7
Sc04g0003900 Simmondsia chinensis HOM05D005253 ORTHO05D006058 1.2e-51 208.0 302 45.7
Ah.02g114240 Amaranthus hybridus HOM05D005253 ORTHO05D006058 1.3e-50 204.5 303 49.5
unitig_578.g15937 Utricularia gibba HOM05D005253 ORTHO05D006058 2.8e-50 203.4 339 47.5
BolC9t59630H Brassica oleracea HOM05D005253 ORTHO05D006058 8.3e-50 201.8 338 43.8
Sp6g34840 Schrenkiella parvula HOM05D005253 ORTHO05D006058 4.1e-49 199.5 344 44.2
SalBow7G2030 Salvia bowleyana HOM05D005253 ORTHO05D006058 4.5e-48 196.1 353 43.6
SHI17413 Sapria himalayana HOM05D005253 ORTHO05D006058 1.3e-47 194.5 334 43.7
DCAR_010175 Daucus carota HOM05D005253 ORTHO05D006058 2.3e-47 193.7 350 44.3
Oeu014427.1 Olea europaea HOM05D005253 ORTHO05D006058 2.3e-47 193.7 346 47.7
Migut.D01615 Erythranthe guttata HOM05D005253 ORTHO05D006058 5.0e-47 192.6 345 47.5
CAN.G982.39 Capsicum annuum HOM05D005253 ORTHO05D006058 9.5e-46 188.3 449 38.1
Thecc.03G108400 Theobroma cacao HOM05D005253 ORTHO05D006058 1.2e-45 188.0 239 55.6
A10p28550 Brassica napus HOM05D005253 ORTHO05D006058 1.6e-45 187.6 338 39.9
ATR0691G224 Amborella trichopoda HOM05D005253 ORTHO05D006058 2.1e-45 187.2 332 42.2
Hund02544 Selenicereus undatus HOM05D005253 ORTHO05D006058 2.1e-45 187.2 313 47.3
Carub.0006s0700 Capsella rubella HOM05D005253 ORTHO05D006058 3.6e-45 186.4 336 44.0
PSO063G5368 Papaver somniferum HOM05D005253 ORTHO05D006058 6.1e-45 185.7 350 44.6
PSO782G3834 Papaver somniferum HOM05D005253 ORTHO05D006058 8.0e-45 185.3 350 41.7
Ah.11g047400 Amaranthus hybridus HOM05D005253 ORTHO05D006058 1.4e-44 184.5 295 42.4
Lj9C438G4 Lonicera japonica HOM05D005253 ORTHO05D006058 2.3e-44 183.7 335 44.8
Lj1g0009577 Lotus japonicus HOM05D005253 ORTHO05D006058 2.3e-44 183.7 307 46.3
unitig_8.g4498 Utricularia gibba HOM05D005253 ORTHO05D006058 1.2e-43 181.4 345 44.1
HanXRQChr05g0157441 Helianthus annuus HOM05D005253 ORTHO05D006058 2.9e-42 176.8 344 41.9
Prupe.8G074000 Prunus persica HOM05D005253 ORTHO05D006058 6.4e-42 175.6 237 45.6
AUR62032138 Chenopodium quinoa HOM05D005253 ORTHO05D006058 1.4e-41 174.5 267 49.1
HanXRQChr02g0051141 Helianthus annuus HOM05D005253 ORTHO05D006058 1.9e-41 174.1 339 42.5
CiPaw.16G080100 Carya illinoinensis HOM05D005253 ORTHO05D006058 1.2e-40 171.4 258 50.8
Aqoxy3G00549 Aquilegia oxysepala HOM05D005253 ORTHO05D006058 1.3e-39 167.9 341 41.6
Glyma.04G159100 Glycine max HOM05D005253 ORTHO05D006058 4.3e-38 162.9 340 33.2
CDE05G1733 Ceratophyllum demersum HOM05D005253 ORTHO05D006058 4.7e-37 159.5 321 40.5
Psat4g046080 Pisum sativum HOM05D005253 ORTHO05D006058 1.1e-36 158.3 340 44.4
Nitab4.5_0001797g0020 Nicotiana tabacum HOM05D005253 ORTHO05D006058 9.8e-35 151.8 256 46.1
Actinidia04794 Actinidia chinensis HOM05D005253 ORTHO05D006058 1.1e-33 148.3 125 66.4
Zm00001eb380690 Zea mays HOM05D005253 ORTHO05D006058 3.5e-32 143.3 311 34.4
HPP92_019902 Vanilla planifolia HOM05D005253 ORTHO05D006058 8.6e-31 138.7 287 38.0
arahy.Tifrunner.gnm1.ann1.U6KDHT Arachis hypogaea HOM05D005253 ORTHO05D006058 1.9e-30 137.5 320 45.9
arahy.Tifrunner.gnm1.ann1.4B3W67 Arachis hypogaea HOM05D005253 ORTHO05D006058 4.3e-30 136.3 320 44.4
Zm00001eb280850 Zea mays HOM05D005253 ORTHO05D006058 1.6e-29 134.4 294 35.0
BcaB08g37286 Brassica carinata HOM05D005460 ORTHO05D006058 3.6e-29 133.3 191 47.6
Os06g0284800 Oryza sativa ssp. japonica HOM05D005253 ORTHO05D006058 5.8e-27 125.9 293 42.0
CDE02G3817 Ceratophyllum demersum HOM05D005253 ORTHO05D006058 1.1e-25 121.7 303 33.7
HPP92_015550 Vanilla planifolia HOM05D005253 ORTHO05D006058 2.4e-25 120.6 287 32.4
Actinidia10441 Actinidia chinensis HOM05D005253 ORTHO05D006058 3.2e-25 120.2 117 59.8
Nn4g23536 Nelumbo nucifera HOM05D005253 ORTHO05D006058 3.3e-22 110.2 91 62.6
Nn4g23537 Nelumbo nucifera HOM05D005253 ORTHO05D006058 4.3e-22 109.8 103 60.2
Oeu014549.1 Olea europaea HOM05D005253 ORTHO05D006058 8.1e-21 105.5 108 60.2
TPR.G28909 Trifolium pratense HOM05D005253 ORTHO05D006058 1.9e-17 94.4 98 59.2
TAR629G1609 Trochodendron aralioides HOM05D004464 ORTHO05D005135 9.2e-17 92.0 299 35.1
Peaxi162Scf00091g00143 Petunia axillaris HOM05D005253 ORTHO05D006058 3.0e-15 87.0 235 30.6
Oeu051243.1 Olea europaea HOM05D005253 ORTHO05D006058 1.2e-13 81.6 89 51.7
Gohir.D13G101706 Gossypium hirsutum HOM05D005253 ORTHO05D006058 6.2e-13 79.3 89 55.1
Actinidia04795 Actinidia chinensis HOM05D005253 ORTHO05D006058 8.1e-13 79.0 131 42.0
SEGI_36320 Sequoiadendron giganteum HOM05D005253 ORTHO05D006058 8.1e-13 79.0 340 28.8
Os09g0476000 Oryza sativa ssp. japonica HOM05D005253 ORTHO05D006058 1.8e-12 77.8 262 29.8
PSO063G4277 Papaver somniferum HOM05D005253 ORTHO05D006058 9.9e-11 72.0 88 48.9
BraA02t04942Z Brassica rapa HOM05D009919 ORTHO05D012044 2.3e-07 60.8 50 64.0
Zm00001eb315970 Zea mays HOM05D005253 ORTHO05D006058 3.9e-07 60.1 189 34.4
RcHm_v2.0_Chr4g0401411 Rosa chinensis HOM05D034610 ORTHO05D006058 4.3e-06 56.6 83 49.4


User provided reference genes

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