Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc3.191 Carica papaya HOM05D006040 ORTHO05D007134 9.5e-225 783.1 374 100.0
Cfa018660 Carpinus fangiana HOM05D006040 ORTHO05D007134 6.1e-123 444.9 369 61.8
Dinv29187 Davidia involucrata HOM05D006040 ORTHO05D007134 6.1e-123 444.9 402 56.7
TWI13G0007 Tripterygium wilfordii HOM05D006040 ORTHO05D007134 8.0e-123 444.5 401 57.9
TWI74G0239 Tripterygium wilfordii HOM05D006040 ORTHO05D007134 8.0e-123 444.5 401 57.9
QL01p000066 Quercus lobata HOM05D006040 ORTHO05D007134 3.0e-122 442.6 371 60.1
Prupe.2G322500 Prunus persica HOM05D006040 ORTHO05D007134 1.5e-121 440.3 396 56.6
Sabra12G0000200 Salix brachista HOM05D006040 ORTHO05D007134 4.9e-120 435.3 370 59.2
Hma1.2p1_1235F.1_g269220 Hydrangea macrophylla HOM05D006040 ORTHO05D007134 1.9e-119 433.3 370 59.7
Lj3C891T14 Lonicera japonica HOM05D006040 ORTHO05D007134 1.9e-119 433.3 350 62.0
Potri.012G004300 Populus trichocarpa HOM05D006040 ORTHO05D007134 4.1e-119 432.2 370 59.2
Thecc.03G212500 Theobroma cacao HOM05D006040 ORTHO05D007134 1.2e-118 430.6 351 62.1
MD07G1303900 Malus domestica HOM05D006040 ORTHO05D007134 2.7e-118 429.5 377 56.8
GSVIVG01038686001 Vitis vinifera HOM05D006040 ORTHO05D007134 6.0e-118 428.3 367 60.5
TAR375G0263 Trochodendron aralioides HOM05D006040 ORTHO05D007134 1.3e-117 427.2 404 54.7
Lalb_Chr10g0102951 Lupinus albus HOM05D006040 ORTHO05D007134 3.0e-117 426.0 371 58.8
Manes.05G196800 Manihot esculenta HOM05D006040 ORTHO05D007134 3.9e-117 425.6 375 56.8
Atru.chr12.2497 Acer truncatum HOM05D006040 ORTHO05D007134 6.6e-117 424.9 356 60.4
Atru.chr12.2521 Acer truncatum HOM05D006040 ORTHO05D007134 6.6e-117 424.9 356 60.4
CsaV3_2G035690 Cucumis sativus L. HOM05D006040 ORTHO05D007134 6.6e-117 424.9 381 55.9
PGR042G3864 Punica granatum HOM05D006040 ORTHO05D007134 1.1e-116 424.1 366 56.3
ClCG02G007980 Citrullus lanatus HOM05D006040 ORTHO05D007134 7.3e-116 421.4 365 58.6
FvH4_7g32290 Fragaria vesca HOM05D006040 ORTHO05D007134 1.2e-115 420.6 402 55.0
Rhsim09G0211300 Rhododendron simsii HOM05D006040 ORTHO05D007134 1.6e-115 420.2 383 58.0
Eucgr.A00979 Eucalyptus grandis HOM05D006040 ORTHO05D007134 2.1e-115 419.9 383 56.4
FAN20G2114 Fragaria x ananassa HOM05D006040 ORTHO05D007134 2.1e-115 419.9 402 54.7
MELO3C024776.2 Cucumis melo HOM05D006040 ORTHO05D007134 6.2e-115 418.3 363 57.6
Sed0006638 Sechium edule HOM05D006040 ORTHO05D007134 6.2e-115 418.3 377 55.4
Medtr5g068730 Medicago truncatula HOM05D006040 ORTHO05D007134 1.4e-114 417.2 388 54.6
CANSAT21G0186 Cannabis sativa HOM05D006040 ORTHO05D007134 3.1e-114 416.0 360 58.6
RcHm_v2.0_Chr1g0383341 Rosa chinensis HOM05D006040 ORTHO05D007134 3.1e-114 416.0 375 56.5
Ca_05537_v3 Cicer arietinum L. HOM05D006040 ORTHO05D007134 1.2e-113 414.1 384 56.2
Psat2g061600 Pisum sativum HOM05D006040 ORTHO05D007134 1.5e-113 413.7 384 55.7
arahy.Tifrunner.gnm1.ann1.QSB9JP Arachis hypogaea HOM05D006040 ORTHO05D007134 2.6e-113 412.9 365 59.2
FAN03G3503 Fragaria x ananassa HOM05D006040 ORTHO05D007134 3.4e-113 412.5 403 53.8
Actinidia18692 Actinidia chinensis HOM05D006040 ORTHO05D007134 4.4e-113 412.1 385 55.8
LjContig00155g0021870 Lotus japonicus HOM05D006040 ORTHO05D007134 9.8e-113 411.0 383 56.4
arahy.Tifrunner.gnm1.ann1.53C9AK Arachis hypogaea HOM05D006040 ORTHO05D007134 1.3e-112 410.6 365 58.9
Glyma.02G220600 Glycine max HOM05D006040 ORTHO05D007134 1.7e-112 410.2 392 53.8
FAN10G3876 Fragaria x ananassa HOM05D006040 ORTHO05D007134 3.7e-112 409.1 401 53.9
Gorai.004G126800 Gossypium raimondii HOM05D006040 ORTHO05D007134 6.4e-112 408.3 354 58.2
TPR.G27916 Trifolium pratense HOM05D006040 ORTHO05D007134 1.9e-111 406.8 381 54.6
FAN06G3790 Fragaria x ananassa HOM05D006040 ORTHO05D007134 4.1e-111 405.6 395 53.9
FAN10G2970 Fragaria x ananassa HOM05D006040 ORTHO05D007134 7.0e-111 404.8 401 52.9
PSO063G2217 Papaver somniferum HOM05D006040 ORTHO05D007134 3.5e-110 402.5 396 54.5
VMungo0647G0797 Vigna mungo HOM05D006040 ORTHO05D007134 7.8e-110 401.4 401 52.4
Aqoxy3G00220 Aquilegia oxysepala HOM05D006040 ORTHO05D007134 1.5e-108 397.1 376 55.3
PSO017G1458 Papaver somniferum HOM05D006040 ORTHO05D007134 1.1e-106 391.0 411 52.8
Lalb_Chr08g0239381 Lupinus albus HOM05D006040 ORTHO05D007134 2.2e-104 383.3 381 54.3
Lj1g0004094 Lotus japonicus HOM05D006040 ORTHO05D007134 2.9e-104 382.9 384 53.6
Ca_16841_v3 Cicer arietinum L. HOM05D006040 ORTHO05D007134 8.3e-104 381.3 346 55.5
THA.LOC104798996 Tarenaya hassleriana HOM05D006040 ORTHO05D007134 3.2e-103 379.4 360 54.7
Os02g0106700 Oryza sativa ssp. japonica HOM05D006040 ORTHO05D007134 5.4e-103 378.6 361 52.6
SalBow2G1501 Salvia bowleyana HOM05D006040 ORTHO05D007134 7.1e-103 378.3 371 53.1
Cc02_g00560 Coffea canephora HOM05D006040 ORTHO05D007134 9.2e-103 377.9 372 52.2
Psat5g070440 Pisum sativum HOM05D006040 ORTHO05D007134 3.5e-102 375.9 346 55.2
Sc25g0001060 Simmondsia chinensis HOM05D006040 ORTHO05D007134 4.6e-102 375.6 361 52.4
TPR.G35913 Trifolium pratense HOM05D006040 ORTHO05D007134 1.3e-101 374.0 358 53.6
CSS0020482 Camellia sinensis var. sinensis HOM05D006040 ORTHO05D007134 2.3e-101 373.2 376 53.7
Zm00001eb209800 Zea mays HOM05D006040 ORTHO05D007134 3.0e-101 372.9 340 55.3
AUR62005943 Chenopodium quinoa HOM05D006040 ORTHO05D007134 6.6e-101 371.7 367 52.3
Peaxi162Scf00815g00228 Petunia axillaris HOM05D006040 ORTHO05D007134 8.6e-101 371.3 347 54.8
AUR62028121 Chenopodium quinoa HOM05D006040 ORTHO05D007134 1.1e-100 370.9 364 52.5
Nitab4.5_0000115g0200 Nicotiana tabacum HOM05D006040 ORTHO05D007134 1.5e-100 370.5 344 53.5
Phvul.009G040600 Phaseolus vulgaris HOM05D006040 ORTHO05D007134 3.3e-100 369.4 358 54.2
ATR0579G018 Amborella trichopoda HOM05D006040 ORTHO05D007134 5.6e-100 368.6 362 52.8
Medtr3g093420 Medicago truncatula HOM05D006040 ORTHO05D007134 9.5e-100 367.9 374 51.9
PGSC0003DMG400026928 Solanum tuberosum HOM05D006040 ORTHO05D007134 9.5e-100 367.9 353 55.0
ECA238G4129 Erigeron canadensis HOM05D006040 ORTHO05D007134 2.1e-99 366.7 341 55.1
Zm00001eb229510 Zea mays HOM05D006040 ORTHO05D007134 2.1e-99 366.7 342 54.1
EL10Ac3g05126 Beta vulgaris HOM05D006040 ORTHO05D007134 2.8e-99 366.3 365 51.0
Hund21080 Selenicereus undatus HOM05D006040 ORTHO05D007134 2.4e-98 363.2 363 51.2
Glyma.06G139400 Glycine max HOM05D006040 ORTHO05D007134 3.1e-98 362.8 358 53.9
MSTRG.18 Avicennia marina HOM05D006040 ORTHO05D007134 4.0e-98 362.5 337 54.9
Sopen06g029320 Solanum pennellii HOM05D006040 ORTHO05D007134 5.2e-98 362.1 352 53.7
HanXRQChr14g0463001 Helianthus annuus HOM05D006040 ORTHO05D007134 8.9e-98 361.3 322 56.8
Solyc06g072970.3 Solanum lycopersicum HOM05D006040 ORTHO05D007134 8.9e-98 361.3 352 54.3
HPP92_012812 Vanilla planifolia HOM05D006040 ORTHO05D007134 8.9e-98 361.3 363 51.5
Nitab4.5_0003012g0150 Nicotiana tabacum HOM05D006040 ORTHO05D007134 7.6e-97 358.2 388 48.7
SEGI_40721 Sequoiadendron giganteum HOM05D006040 ORTHO05D007134 2.2e-96 356.7 397 48.1
CAN.G65.140 Capsicum annuum HOM05D006040 ORTHO05D007134 3.8e-96 355.9 367 52.0
Migut.F00965 Erythranthe guttata HOM05D006040 ORTHO05D007134 8.4e-96 354.8 339 54.9
Thhalv10004343m.g Eutrema salsugineum HOM05D006040 ORTHO05D007134 1.2e-94 350.9 380 50.0
SGA_v2.0_scaffold59G20786 Striga asiatica HOM05D006040 ORTHO05D007134 1.0e-93 347.8 352 51.1
DCAR_010554 Daucus carota HOM05D006040 ORTHO05D007134 2.3e-93 346.7 353 52.4
Sp2g22720 Schrenkiella parvula HOM05D006040 ORTHO05D007134 5.1e-93 345.5 376 50.0
AT5G24680 Arabidopsis thaliana HOM05D006040 ORTHO05D007134 3.3e-92 342.8 350 51.4
FvH4_7g33360 Fragaria vesca HOM05D006040 ORTHO05D007134 9.6e-92 341.3 302 57.9
Carub.0006s2254 Capsella rubella HOM05D006040 ORTHO05D007134 4.7e-91 339.0 373 48.5
Lsat_1_v5_gn_8_36881 Lactuca sativa HOM05D006040 ORTHO05D007134 3.4e-89 332.8 334 52.1
A06p35530 Brassica napus HOM05D006040 ORTHO05D007134 4.4e-89 332.4 373 50.1
AL6G36290 Arabidopsis lyrata HOM05D006040 ORTHO05D007134 7.6e-89 331.6 341 51.9
BraA06t26478Z Brassica rapa HOM05D006040 ORTHO05D007134 1.3e-88 330.9 360 50.8
unitig_578.g16670 Utricularia gibba HOM05D006040 ORTHO05D007134 8.4e-88 328.2 336 52.1
Gohir.A08G107000 Gossypium hirsutum HOM05D006040 ORTHO05D007134 4.6e-86 322.4 354 50.0
C07p43010 Brassica napus HOM05D006040 ORTHO05D007134 3.9e-85 319.3 345 51.0
BolC7t44830H Brassica oleracea HOM05D006040 ORTHO05D007134 3.9e-85 319.3 345 51.0
Phvul.008G187700 Phaseolus vulgaris HOM05D006040 ORTHO05D007134 5.3e-82 308.9 324 50.3
Glyma.14G187200 Glycine max HOM05D006040 ORTHO05D007134 1.5e-81 307.4 361 49.0
COL.COLO4_14403 Corchorus olitorius HOM05D002417 ORTHO05D002589 1.6e-78 297.4 254 57.5
Aa31LG11G3920 Aethionema arabicum HOM05D006040 ORTHO05D007134 4.6e-78 295.8 470 38.7
Duzib068G0842 Durio zibethinus HOM05D006040 ORTHO05D007134 5.6e-76 288.9 254 56.7
MBI12_g33183_MAGBIO Magnolia biondii HOM05D006040 ORTHO05D007134 2.1e-75 287.0 323 50.5
Pp3c12_6120 Physcomitrium patens HOM05D006040 ORTHO05D007134 2.8e-75 286.6 423 38.8
BcaNung01250 Brassica carinata HOM05D006040 ORTHO05D007134 4.8e-75 285.8 348 48.9
FAN01G0445 Fragaria x ananassa HOM05D006040 ORTHO05D007134 6.9e-74 282.0 303 52.1
Haze_00002 Corylus avellana HOM05D006040 ORTHO05D007134 9.0e-74 281.6 196 69.9
Pp3c13_14780 Physcomitrium patens HOM05D006040 ORTHO05D007134 4.5e-73 279.3 432 38.7
Pp3c20_10180 Physcomitrium patens HOM05D006040 ORTHO05D007134 1.3e-69 267.7 403 37.2
vmacro10175 Vaccinium macrocarpon HOM05D006040 ORTHO05D007134 6.7e-69 265.4 269 52.0
Pp3c25_2290 Physcomitrium patens HOM05D006040 ORTHO05D007134 2.0e-65 253.8 459 33.8
Mapoly0044s0025 Marchantia polymorpha HOM05D006040 ORTHO05D007134 6.7e-61 238.8 537 31.8
Glyma.04G225400 Glycine max HOM05D006040 ORTHO05D007134 2.2e-59 233.8 244 49.6
Mapoly0088s0074 Marchantia polymorpha HOM05D006040 ORTHO05D007134 1.5e-57 227.6 553 29.5
VMungo1309G2872 Vigna mungo HOM05D006040 ORTHO05D007134 9.7e-52 208.4 335 38.5
CARHR188790 Cardamine hirsuta HOM05D006040 ORTHO05D007134 9.1e-50 201.8 173 56.6
MD01G1231800 Malus domestica HOM05D006040 ORTHO05D007134 4.5e-49 199.5 147 61.9
Gohir.D08G118000 Gossypium hirsutum HOM05D006040 ORTHO05D007134 2.3e-45 187.2 281 39.5
CBR_g29958 Chara braunii HOM05D006040 ORTHO05D007134 6.7e-45 185.7 184 51.1
Lalb_Chr14g0364691 Lupinus albus HOM05D006040 ORTHO05D007134 6.7e-45 185.7 172 54.7
Pp3c23_1100 Physcomitrium patens HOM05D006040 ORTHO05D007134 3.1e-42 176.8 170 48.8
CBR_g3746 Chara braunii HOM05D000019 ORTHO05D000002 7.0e-42 175.6 154 54.5
FvH4_7g33700 Fragaria vesca HOM05D006040 ORTHO05D007134 1.7e-35 154.5 268 36.9
SEGI_00936 Sequoiadendron giganteum HOM05D006040 ORTHO05D007134 2.2e-35 154.1 146 50.0
SEGI_39404 Sequoiadendron giganteum HOM05D006040 ORTHO05D007134 2.8e-35 153.7 155 47.7
SMO347G0626 Selaginella moellendorffii HOM05D006040 ORTHO05D007134 2.5e-31 140.6 191 42.4
Oeu063747.1 Olea europaea HOM05D006040 ORTHO05D007134 1.1e-23 115.2 100 56.0
SEGI_38707 Sequoiadendron giganteum HOM05D006040 ORTHO05D007134 2.1e-22 110.9 155 38.1
MD01G1231900 Malus domestica HOM05D006040 ORTHO05D007134 2.0e-20 104.4 105 53.3
CDE04G3558 Ceratophyllum demersum HOM05D006040 ORTHO05D007134 2.0e-12 77.8 58 63.8
Cre05.g240500 Chlamydomonas reinhardtii HOM05D006040 ORTHO05D007134 3.7e-11 73.6 54 63.0
Haze_17391 Corylus avellana HOM05D001765 ORTHO05D005876 4.9e-11 73.2 63 57.1
Oeu063748.2 Olea europaea HOM05D003307 ORTHO05D003798 9.2e-10 68.9 52 55.8
SalBow2G3456 Salvia bowleyana HOM05D000168 ORTHO05D007134 2.8e-06 57.4 38 71.1


User provided reference genes

Program Settings