Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc3.189 Carica papaya HOM05D003381 ORTHO05D003880 2.4e-32 141.7 80 100.0
Lj1g0021256 Lotus japonicus HOM05D003381 ORTHO05D003880 1.6e-20 102.4 77 70.1
Phvul.009G040500 Phaseolus vulgaris HOM05D003381 ORTHO05D003880 1.6e-20 102.4 77 71.4
Ca_16840_v3 Cicer arietinum L. HOM05D003381 ORTHO05D003880 7.9e-20 100.1 77 70.1
TPR.G35911 Trifolium pratense HOM05D003381 ORTHO05D003880 1.4e-19 99.4 77 68.8
Atru.chr12.2499 Acer truncatum HOM05D003381 ORTHO05D003880 1.8e-19 99.0 74 73.0
Atru.chr12.2523 Acer truncatum HOM05D003381 ORTHO05D003880 1.8e-19 99.0 74 73.0
Ciclev10022951m.g Citrus clementina HOM05D003381 ORTHO05D003880 1.8e-19 99.0 75 70.7
Lalb_Chr04g0252571 Lupinus albus HOM05D003381 ORTHO05D003880 1.1e-18 96.3 77 67.5
Potri.012G004500 Populus trichocarpa HOM05D003381 ORTHO05D003880 1.1e-18 96.3 75 69.3
Sabra12G0000400 Salix brachista HOM05D003381 ORTHO05D003880 1.5e-18 95.9 75 68.0
RcHm_v2.0_Chr1g0383321 Rosa chinensis HOM05D003381 ORTHO05D003880 3.3e-18 94.7 74 73.0
Sabra15G0000300 Salix brachista HOM05D003381 ORTHO05D003880 7.4e-18 93.6 75 69.3
CSS0005275 Camellia sinensis var. sinensis HOM05D003381 ORTHO05D003880 1.7e-17 92.4 73 71.2
Medtr3g093400 Medicago truncatula HOM05D003381 ORTHO05D003880 1.7e-17 92.4 77 64.9
Prupe.2G322300 Prunus persica HOM05D003381 ORTHO05D003880 1.7e-17 92.4 75 72.0
CAN.G303.62 Capsicum annuum HOM05D003381 ORTHO05D003880 2.2e-17 92.0 74 67.6
Lalb_Chr08g0239391 Lupinus albus HOM05D003381 ORTHO05D003880 2.2e-17 92.0 77 63.6
Nitab4.5_0007121g0010 Nicotiana tabacum HOM05D003381 ORTHO05D003880 2.2e-17 92.0 74 68.9
Sopen06g029340 Solanum pennellii HOM05D003381 ORTHO05D003880 2.2e-17 92.0 76 67.1
FAN03G2343 Fragaria x ananassa HOM05D003381 ORTHO05D003880 3.7e-17 91.3 74 68.9
Psat5g070520 Pisum sativum HOM05D003381 ORTHO05D003880 3.7e-17 91.3 77 64.9
AUR62005946 Chenopodium quinoa HOM05D003381 ORTHO05D003880 4.8e-17 90.9 75 62.7
Dinv29190 Davidia involucrata HOM05D003381 ORTHO05D003880 4.8e-17 90.9 74 66.2
Glyma.06G139300 Glycine max HOM05D003381 ORTHO05D003880 6.3e-17 90.5 77 66.2
Hma1.2p1_0115F.1_g055840 Hydrangea macrophylla HOM05D003381 ORTHO05D003880 6.3e-17 90.5 74 66.2
Manes.01G002300 Manihot esculenta HOM05D003381 ORTHO05D003880 6.3e-17 90.5 74 70.3
FAN10G2693 Fragaria x ananassa HOM05D003381 ORTHO05D003880 1.1e-16 89.7 74 68.9
FAN10G4285 Fragaria x ananassa HOM05D003381 ORTHO05D003880 1.1e-16 89.7 74 68.9
ClCG01G000030 Citrullus lanatus HOM05D003381 ORTHO05D003880 1.4e-16 89.4 74 68.9
Migut.F00121 Erythranthe guttata HOM05D003381 ORTHO05D003880 1.4e-16 89.4 73 69.9
CANSAT21G1431 Cannabis sativa HOM05D003381 ORTHO05D003880 1.8e-16 89.0 74 63.5
Peaxi162Scf00007g00254 Petunia axillaris HOM05D003381 ORTHO05D003880 1.8e-16 89.0 74 63.5
Solyc03g096760.1 Solanum lycopersicum HOM05D003381 ORTHO05D003880 2.4e-16 88.6 74 67.6
Sopen03g027490 Solanum pennellii HOM05D003381 ORTHO05D003880 2.4e-16 88.6 74 67.6
HanXRQChr08g0225861 Helianthus annuus HOM05D003381 ORTHO05D003880 3.1e-16 88.2 74 66.2
Psat5g070560 Pisum sativum HOM05D003381 ORTHO05D003880 3.1e-16 88.2 73 67.1
Potri.015G000500 Populus trichocarpa HOM05D003381 ORTHO05D003880 3.1e-16 88.2 75 65.3
TWI81G0192 Tripterygium wilfordii HOM05D003381 ORTHO05D003880 3.1e-16 88.2 74 67.6
Migut.F00967 Erythranthe guttata HOM05D003381 ORTHO05D003880 5.3e-16 87.4 73 68.5
Lalb_Chr11g0067571 Lupinus albus HOM05D003381 ORTHO05D003880 5.3e-16 87.4 74 63.5
Glyma.14G188300 Glycine max HOM05D003381 ORTHO05D003880 7.0e-16 87.0 77 64.9
Dinv17275 Davidia involucrata HOM05D003381 ORTHO05D003880 9.1e-16 86.7 74 63.5
unitig_60.g25635 Utricularia gibba HOM05D003381 ORTHO05D003880 1.2e-15 86.3 74 64.9
PGSC0003DMG400027025 Solanum tuberosum HOM05D003381 ORTHO05D003880 2.0e-15 85.5 74 64.9
THA.LOC104798994 Tarenaya hassleriana HOM05D003381 ORTHO05D003880 2.0e-15 85.5 78 61.5
LjContig00155g0019595 Lotus japonicus HOM05D003381 ORTHO05D003880 3.5e-15 84.7 77 63.6
SalBow4G2332 Salvia bowleyana HOM05D003381 ORTHO05D003880 4.5e-15 84.3 73 65.8
MSTRG.26951 Avicennia marina HOM05D003381 ORTHO05D003880 5.9e-15 84.0 73 64.4
Lalb_Chr10g0102971 Lupinus albus HOM05D003381 ORTHO05D003880 5.9e-15 84.0 77 61.0
Cc02_g00580 Coffea canephora HOM05D003381 ORTHO05D003880 7.7e-15 83.6 74 59.5
Glyma.04G225500 Glycine max HOM05D003381 ORTHO05D003880 7.7e-15 83.6 77 62.3
Phvul.008G187900 Phaseolus vulgaris HOM05D003381 ORTHO05D003880 7.7e-15 83.6 77 59.7
TWI81G0266 Tripterygium wilfordii HOM05D003381 ORTHO05D003880 7.7e-15 83.6 74 66.2
Sed0013785 Sechium edule HOM05D003381 ORTHO05D003880 1.0e-14 83.2 74 63.5
AT3G49570 Arabidopsis thaliana HOM05D003381 ORTHO05D003880 1.3e-14 82.8 78 62.8
Sp5g12530 Schrenkiella parvula HOM05D003381 ORTHO05D003880 1.3e-14 82.8 78 60.3
MD07G1303600 Malus domestica HOM05D003381 ORTHO05D003880 1.7e-14 82.4 74 66.2
AL5G29410 Arabidopsis lyrata HOM05D003381 ORTHO05D003880 2.2e-14 82.0 78 62.8
AL5G29420 Arabidopsis lyrata HOM05D003381 ORTHO05D003880 2.2e-14 82.0 78 62.8
Haze_00337 Corylus avellana HOM05D003381 ORTHO05D003880 2.2e-14 82.0 74 60.8
Migut.F00966 Erythranthe guttata HOM05D003381 ORTHO05D003880 2.9e-14 81.6 73 63.0
Carub.0005s1591 Capsella rubella HOM05D003381 ORTHO05D003880 3.8e-14 81.3 78 61.5
CANSAT21G0934 Cannabis sativa HOM05D003381 ORTHO05D003880 5.0e-14 80.9 74 59.5
Actinidia34289 Actinidia chinensis HOM05D003381 ORTHO05D003880 6.5e-14 80.5 74 63.5
AUR62028119 Chenopodium quinoa HOM05D003381 ORTHO05D003880 6.5e-14 80.5 75 60.0
Solyc03g096780.1 Solanum lycopersicum HOM05D003381 ORTHO05D003880 6.5e-14 80.5 74 62.2
Sopen03g027520 Solanum pennellii HOM05D003381 ORTHO05D003880 6.5e-14 80.5 74 62.2
CAN.G303.61 Capsicum annuum HOM05D003381 ORTHO05D003880 8.5e-14 80.1 73 65.8
ECA233G1855 Erigeron canadensis HOM05D003381 ORTHO05D003880 1.1e-13 79.7 74 59.5
MD01G1231600 Malus domestica HOM05D003381 ORTHO05D003880 1.1e-13 79.7 75 64.0
EL10Ac3g05129 Beta vulgaris HOM05D003381 ORTHO05D003880 1.5e-13 79.3 75 61.3
Carub.0005s1590 Capsella rubella HOM05D003381 ORTHO05D003880 1.5e-13 79.3 78 61.5
Carub.0006s2251 Capsella rubella HOM05D003381 ORTHO05D003880 1.5e-13 79.3 78 60.3
Thhalv10010815m.g Eutrema salsugineum HOM05D003381 ORTHO05D003880 1.5e-13 79.3 78 61.5
SalBow4G1643 Salvia bowleyana HOM05D003381 ORTHO05D003880 1.5e-13 79.3 66 62.1
CARHR158590 Cardamine hirsuta HOM05D003381 ORTHO05D003880 1.9e-13 79.0 76 59.2
Eucgr.K00481 Eucalyptus grandis HOM05D003381 ORTHO05D003880 1.9e-13 79.0 74 62.2
PGSC0003DMG400000545 Solanum tuberosum HOM05D003381 ORTHO05D003880 1.9e-13 79.0 74 62.2
Ah.13g071060 Amaranthus hybridus HOM05D003381 ORTHO05D003880 2.5e-13 78.6 74 60.8
BcaC07g39421 Brassica carinata HOM05D003381 ORTHO05D003880 2.5e-13 78.6 77 59.7
DCAR_010556 Daucus carota HOM05D003381 ORTHO05D003880 3.2e-13 78.2 74 60.8
Thhalv10005368m.g Eutrema salsugineum HOM05D003381 ORTHO05D003880 3.2e-13 78.2 73 61.6
HanXRQChr08g0225771 Helianthus annuus HOM05D003381 ORTHO05D003880 3.2e-13 78.2 74 60.8
HanXRQChr08g0225851 Helianthus annuus HOM05D003381 ORTHO05D003880 3.2e-13 78.2 74 60.8
HanXRQChr08g0225881 Helianthus annuus HOM05D003381 ORTHO05D003880 3.2e-13 78.2 74 60.8
Nitab4.5_0002691g0070 Nicotiana tabacum HOM05D003381 ORTHO05D003880 3.2e-13 78.2 74 60.8
Aqoxy5G04393 Aquilegia oxysepala HOM05D003381 ORTHO05D003880 4.2e-13 77.8 74 62.2
FvH4_7g33340 Fragaria vesca HOM05D003381 ORTHO05D003880 4.2e-13 77.8 74 62.2
Gohir.A08G106600 Gossypium hirsutum HOM05D003381 ORTHO05D003880 4.2e-13 77.8 74 59.5
Sp2g22730 Schrenkiella parvula HOM05D003381 ORTHO05D003880 4.2e-13 77.8 73 61.6
SGA_v2.0_scaffold351G49675 Striga asiatica HOM05D003381 ORTHO05D003880 4.2e-13 77.8 73 61.6
AT5G24660 Arabidopsis thaliana HOM05D003381 ORTHO05D003880 5.5e-13 77.4 77 59.7
TAR374G1397 Trochodendron aralioides HOM05D003381 ORTHO05D003880 5.5e-13 77.4 74 62.2
CSS0002942 Camellia sinensis var. sinensis HOM05D003381 ORTHO05D003880 7.2e-13 77.0 74 62.2
COL.COLO4_14402 Corchorus olitorius HOM05D003381 ORTHO05D003880 7.2e-13 77.0 53 75.5
Migut.F00119 Erythranthe guttata HOM05D003381 ORTHO05D003880 9.4e-13 76.6 74 60.8
PGSC0003DMG400000547 Solanum tuberosum HOM05D003381 ORTHO05D003880 1.2e-12 76.3 74 62.2
TAR375G0964 Trochodendron aralioides HOM05D003381 ORTHO05D003880 1.2e-12 76.3 73 61.6
C08p24550 Brassica napus HOM05D003381 ORTHO05D003880 1.6e-12 75.9 75 58.7
BolC8t50074H Brassica oleracea HOM05D003381 ORTHO05D003880 1.6e-12 75.9 75 58.7
Nitab4.5_0002691g0080 Nicotiana tabacum HOM05D003381 ORTHO05D003880 1.6e-12 75.9 74 60.8
AL6G36270 Arabidopsis lyrata HOM05D003381 ORTHO05D003880 2.1e-12 75.5 72 61.1
BcaB01g00694 Brassica carinata HOM05D003381 ORTHO05D003880 2.1e-12 75.5 75 58.7
C02p60110 Brassica napus HOM05D003381 ORTHO05D003880 2.1e-12 75.5 73 60.3
CARHR188800 Cardamine hirsuta HOM05D003381 ORTHO05D003880 2.1e-12 75.5 73 60.3
SGA_v2.0_scaffold44G16873 Striga asiatica HOM05D003381 ORTHO05D003880 2.1e-12 75.5 73 63.0
Carub.0006s2252 Capsella rubella HOM05D003381 ORTHO05D003880 2.7e-12 75.1 73 58.9
PSO675G1709 Papaver somniferum HOM05D003381 ORTHO05D003880 2.7e-12 75.1 75 61.3
Sc14g0006700 Simmondsia chinensis HOM05D003381 ORTHO05D003880 2.7e-12 75.1 73 58.9
CsaV3_5G000160 Cucumis sativus L. HOM05D003381 ORTHO05D003880 3.6e-12 74.7 73 64.4
PSO541G0132 Papaver somniferum HOM05D003381 ORTHO05D003880 3.6e-12 74.7 75 61.3
BcaC03g17951 Brassica carinata HOM05D003381 ORTHO05D003880 4.7e-12 74.3 73 58.9
A06p18190 Brassica napus HOM05D003381 ORTHO05D003880 4.7e-12 74.3 78 59.0
BolC2t12066H Brassica oleracea HOM05D003381 ORTHO05D003880 4.7e-12 74.3 73 58.9
BraA02t08981Z Brassica rapa HOM05D003381 ORTHO05D003880 4.7e-12 74.3 73 58.9
BraA06t24903Z Brassica rapa HOM05D003381 ORTHO05D003880 4.7e-12 74.3 78 59.0
Peaxi162Scf00815g00116 Petunia axillaris HOM05D003381 ORTHO05D003880 4.7e-12 74.3 74 58.1
Sopen03g027500 Solanum pennellii HOM05D003381 ORTHO05D003880 4.7e-12 74.3 74 58.1
BolC8t50073H Brassica oleracea HOM05D003381 ORTHO05D003880 6.1e-12 73.9 78 59.0
Oeu063749.1 Olea europaea HOM05D003381 ORTHO05D003880 6.1e-12 73.9 74 58.1
Gohir.A08G106800 Gossypium hirsutum HOM05D003381 ORTHO05D003880 8.0e-12 73.6 77 58.4
VMungo1309G1451 Vigna mungo HOM05D003381 ORTHO05D003880 8.0e-12 73.6 77 57.1
A06p18160 Brassica napus HOM05D003381 ORTHO05D003880 1.0e-11 73.2 75 56.0
AUR62005945 Chenopodium quinoa HOM05D003381 ORTHO05D003880 1.0e-11 73.2 73 57.5
Ah.13g071070 Amaranthus hybridus HOM05D003381 ORTHO05D003880 1.4e-11 72.8 74 55.4
Sp5g12540 Schrenkiella parvula HOM05D003381 ORTHO05D003880 1.4e-11 72.8 78 56.4
BcaNung02004 Brassica carinata HOM05D003381 ORTHO05D003880 1.8e-11 72.4 73 57.5
A06p35480 Brassica napus HOM05D003381 ORTHO05D003880 1.8e-11 72.4 73 57.5
C07p43060 Brassica napus HOM05D003381 ORTHO05D003880 1.8e-11 72.4 73 57.5
BolC7t44833H Brassica oleracea HOM05D003381 ORTHO05D003880 1.8e-11 72.4 73 57.5
BraA06t26471Z Brassica rapa HOM05D003381 ORTHO05D003880 1.8e-11 72.4 73 57.5
EL10Ac3g05128 Beta vulgaris HOM05D003381 ORTHO05D003880 2.3e-11 72.0 74 56.8
Gohir.D08G117900 Gossypium hirsutum HOM05D003381 ORTHO05D003880 2.3e-11 72.0 77 57.1
AT5G24655 Arabidopsis thaliana HOM05D003381 ORTHO05D003880 4.0e-11 71.2 77 54.5
BcaC07g39418 Brassica carinata HOM05D003381 ORTHO05D003880 4.0e-11 71.2 78 56.4
BcaC09g49963 Brassica carinata HOM05D003381 ORTHO05D003880 5.2e-11 70.9 59 62.7
Nitab4.5_0000115g0190 Nicotiana tabacum HOM05D003381 ORTHO05D003880 5.2e-11 70.9 74 56.8
QL09p005975 Quercus lobata HOM05D003381 ORTHO05D003880 5.2e-11 70.9 74 56.8
HPP92_008910 Vanilla planifolia HOM05D003381 ORTHO05D003880 5.2e-11 70.9 74 56.8
Aa31LG11G3910 Aethionema arabicum HOM05D003381 ORTHO05D003880 6.7e-11 70.5 73 54.8
AL6G36260 Arabidopsis lyrata HOM05D003381 ORTHO05D003880 6.7e-11 70.5 77 54.5
Gorai.004G126500 Gossypium raimondii HOM05D003381 ORTHO05D003880 6.7e-11 70.5 77 55.8
Oeu017357.1 Olea europaea HOM05D003381 ORTHO05D003880 6.7e-11 70.5 73 57.5
HanXRQChr16g0499781 Helianthus annuus HOM05D003381 ORTHO05D003880 8.8e-11 70.1 72 52.8
QL11p009417 Quercus lobata HOM05D003381 ORTHO05D003880 8.8e-11 70.1 74 59.5
BcaC07g39419 Brassica carinata HOM05D003381 ORTHO05D003880 2.0e-10 68.9 75 56.0
Peaxi162Scf00685g10014 Petunia axillaris HOM05D003381 ORTHO05D003880 2.0e-10 68.9 52 65.4
PSO017G3293 Papaver somniferum HOM05D003381 ORTHO05D003880 2.6e-10 68.6 78 55.1
ECA232G1694 Erigeron canadensis HOM05D003381 ORTHO05D003880 3.3e-10 68.2 59 55.9
Gohir.D08G117850 Gossypium hirsutum HOM05D003381 ORTHO05D003880 3.3e-10 68.2 74 55.4
Gorai.004G126400 Gossypium raimondii HOM05D003381 ORTHO05D003880 3.3e-10 68.2 74 55.4
CAN.G65.142 Capsicum annuum HOM05D003381 ORTHO05D003880 9.7e-10 66.6 52 63.5
Nn3g18090 Nelumbo nucifera HOM05D003381 ORTHO05D003880 1.3e-09 66.2 73 58.9
PGR142G3642 Punica granatum HOM05D003381 ORTHO05D003880 2.2e-09 65.5 74 56.8
CARHR158580 Cardamine hirsuta HOM05D003381 ORTHO05D003880 2.8e-09 65.1 78 56.4
Nitab4.5_0002867g0010 Nicotiana tabacum HOM05D003381 ORTHO05D003880 4.8e-09 64.3 74 52.7
PGSC0003DMG400000546 Solanum tuberosum HOM05D003381 ORTHO05D003880 4.8e-09 64.3 74 54.1
ATR0579G061 Amborella trichopoda HOM05D003381 ORTHO05D003880 6.3e-09 63.9 74 52.7
COL.COLO4_14401 Corchorus olitorius HOM05D003381 ORTHO05D003880 6.3e-09 63.9 78 55.1
Zm00001eb220550 Zea mays HOM05D003381 ORTHO05D003880 8.2e-09 63.5 73 53.4
vmacro06476 Vaccinium macrocarpon HOM05D003381 ORTHO05D003880 1.1e-08 63.2 76 52.6
Eucgr.K00482 Eucalyptus grandis HOM05D003381 ORTHO05D003880 1.4e-08 62.8 74 55.4
Eucgr.K00530 Eucalyptus grandis HOM05D003381 ORTHO05D003880 1.4e-08 62.8 74 55.4
Oeu055427.1 Olea europaea HOM05D003381 ORTHO05D003880 1.8e-08 62.4 52 63.5
Duzib084G1005 Durio zibethinus HOM05D003381 ORTHO05D003880 2.4e-08 62.0 76 52.6
Solyc03g096770.1 Solanum lycopersicum HOM05D003381 ORTHO05D003880 2.4e-08 62.0 74 54.1
Solyc06g072990.1 Solanum lycopersicum HOM05D003381 ORTHO05D003880 2.4e-08 62.0 74 52.7
Lsat_1_v5_gn_8_4301 Lactuca sativa HOM05D003381 ORTHO05D003880 9.1e-08 60.1 74 51.4
Aa31LG4G18060 Aethionema arabicum HOM05D003381 ORTHO05D003880 1.2e-07 59.7 78 51.3
CiPaw.06G038100 Carya illinoinensis HOM05D003381 ORTHO05D003880 1.6e-07 59.3 88 47.7
Lsat_1_v5_gn_2_3421 Lactuca sativa HOM05D003381 ORTHO05D003880 2.0e-07 58.9 74 50.0
Zm00001eb043810 Zea mays HOM05D003381 ORTHO05D003880 2.0e-07 58.9 75 49.3
SEGI_09109 Sequoiadendron giganteum HOM05D003381 ORTHO05D003880 5.9e-07 57.4 77 48.1
Peaxi162Scf00542g00013 Petunia axillaris HOM05D003381 ORTHO05D003880 1.3e-06 56.2 53 66.0
SEGI_37007 Sequoiadendron giganteum HOM05D003381 ORTHO05D003880 1.3e-06 56.2 75 46.7
CDE04G0378 Ceratophyllum demersum HOM05D003381 ORTHO05D003880 1.7e-06 55.8 55 61.8
MBI04_g09823_MAGBIO Magnolia biondii HOM05D003381 ORTHO05D003880 2.2e-06 55.5 73 49.3
Sabra01G0056200 Salix brachista HOM05D000001 ORTHO05D003880 2.2e-06 55.5 46 69.6
CDE09G1369 Ceratophyllum demersum HOM05D001765 ORTHO05D003527 5.0e-06 54.3 75 49.3
SEGI_32370 Sequoiadendron giganteum HOM05D003381 ORTHO05D003880 6.5e-06 53.9 77 45.5
Lsat_1_v5_gn_8_4241 Lactuca sativa HOM05D003381 ORTHO05D003880 8.5e-06 53.5 74 47.3


User provided reference genes

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