Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc3.184 Carica papaya HOM05D004660 ORTHO05D005474 4.6e-82 307.8 146 100.0
Haze_00331 Corylus avellana HOM05D004660 ORTHO05D005474 7.1e-75 283.9 146 91.1
Glyma.04G225900 Glycine max HOM05D004660 ORTHO05D005474 2.7e-74 282.0 147 90.5
GSVIVG01038677001 Vitis vinifera HOM05D004660 ORTHO05D005474 7.8e-74 280.4 146 87.7
Glyma.06G138900 Glycine max HOM05D004660 ORTHO05D005474 1.0e-73 280.0 147 89.1
arahy.Tifrunner.gnm1.ann1.6FR5WN Arachis hypogaea HOM05D004660 ORTHO05D005474 6.6e-73 277.3 146 88.4
Duzib205G1429 Durio zibethinus HOM05D004660 ORTHO05D005474 6.6e-73 277.3 147 89.1
Phvul.008G188100 Phaseolus vulgaris HOM05D004660 ORTHO05D005474 6.6e-73 277.3 146 87.0
VMungo0647G0407 Vigna mungo HOM05D004660 ORTHO05D005474 8.7e-73 276.9 146 86.3
Hma1.2p1_0115F.1_g055760 Hydrangea macrophylla HOM05D004660 ORTHO05D005474 2.5e-72 275.4 146 87.0
Thecc.03G211800 Theobroma cacao HOM05D004660 ORTHO05D005474 4.3e-72 274.6 147 87.8
Atru.chr12.2504 Acer truncatum HOM05D004660 ORTHO05D005474 5.6e-72 274.2 146 88.4
Atru.chr12.2527 Acer truncatum HOM05D004660 ORTHO05D005474 5.6e-72 274.2 146 88.4
Glyma.02G221000 Glycine max HOM05D004660 ORTHO05D005474 1.6e-71 272.7 146 86.3
Lj1g0017846 Lotus japonicus HOM05D004660 ORTHO05D005474 2.1e-71 272.3 146 85.6
VMungo1309G2317 Vigna mungo HOM05D004660 ORTHO05D005474 2.1e-71 272.3 148 87.8
CiPaw.06G038500 Carya illinoinensis HOM05D004660 ORTHO05D005474 6.2e-71 270.8 147 87.1
Potri.015G000900 Populus trichocarpa HOM05D004660 ORTHO05D005474 6.2e-71 270.8 148 85.8
Ciclev10022731m.g Citrus clementina HOM05D004660 ORTHO05D005474 1.4e-70 269.6 146 85.6
Glyma.14G188500 Glycine max HOM05D004660 ORTHO05D005474 1.4e-70 269.6 146 84.9
vmacro10172 Vaccinium macrocarpon HOM05D004660 ORTHO05D005474 1.4e-70 269.6 146 85.6
Nitab4.5_0007121g0060 Nicotiana tabacum HOM05D004660 ORTHO05D005474 1.8e-70 269.2 146 84.9
Nitab4.5_0000021g0160 Nicotiana tabacum HOM05D004660 ORTHO05D005474 2.4e-70 268.9 146 84.9
CSS0012455 Camellia sinensis var. sinensis HOM05D004660 ORTHO05D005474 4.0e-70 268.1 146 85.6
CAN.G303.55 Capsicum annuum HOM05D004660 ORTHO05D005474 9.0e-70 266.9 146 85.6
CiPaw.05G208600 Carya illinoinensis HOM05D004660 ORTHO05D005474 1.2e-69 266.5 146 83.6
Rhsim09G0211000 Rhododendron simsii HOM05D004660 ORTHO05D005474 1.2e-69 266.5 146 83.6
Solyc03g079970.1 Solanum lycopersicum HOM05D004660 ORTHO05D005474 2.6e-69 265.4 146 82.9
PGSC0003DMG400000574 Solanum tuberosum HOM05D004660 ORTHO05D005474 2.6e-69 265.4 146 82.9
Thhalv10010801m.g Eutrema salsugineum HOM05D004660 ORTHO05D005474 3.4e-69 265.0 147 83.7
Lalb_Chr10g0102981 Lupinus albus HOM05D004660 ORTHO05D005474 3.4e-69 265.0 146 85.6
THA.LOC104814957 Tarenaya hassleriana HOM05D004660 ORTHO05D005474 3.4e-69 265.0 147 85.0
Gohir.D08G117700 Gossypium hirsutum HOM05D004660 ORTHO05D005474 5.8e-69 264.2 147 83.7
Gorai.004G126200 Gossypium raimondii HOM05D004660 ORTHO05D005474 5.8e-69 264.2 147 83.7
Ca_16837_v3 Cicer arietinum L. HOM05D004660 ORTHO05D005474 7.6e-69 263.8 144 83.3
Gohir.A08G106300 Gossypium hirsutum HOM05D004660 ORTHO05D005474 7.6e-69 263.8 147 84.4
Lj1P1031T30 Lonicera japonica HOM05D004660 ORTHO05D005474 7.6e-69 263.8 150 84.7
Phvul.009G040000 Phaseolus vulgaris HOM05D004660 ORTHO05D005474 7.6e-69 263.8 148 86.5
Sopen03g021700 Solanum pennellii HOM05D004660 ORTHO05D005474 7.6e-69 263.8 146 82.2
Manes.05G195800 Manihot esculenta HOM05D004660 ORTHO05D005474 9.9e-69 263.5 146 82.9
CSS0035101 Camellia sinensis var. sinensis HOM05D004660 ORTHO05D005474 1.3e-68 263.1 146 84.2
THA.LOC104803315 Tarenaya hassleriana HOM05D004660 ORTHO05D005474 1.7e-68 262.7 147 84.4
MSTRG.26954 Avicennia marina HOM05D004660 ORTHO05D005474 2.2e-68 262.3 146 80.1
TPR.G35910 Trifolium pratense HOM05D004660 ORTHO05D005474 2.2e-68 262.3 146 84.2
BcaB02g09594 Brassica carinata HOM05D004660 ORTHO05D005474 2.9e-68 261.9 146 82.2
QL09p006015 Quercus lobata HOM05D004660 ORTHO05D005474 2.9e-68 261.9 146 84.9
COL.COLO4_14397 Corchorus olitorius HOM05D004660 ORTHO05D005474 3.8e-68 261.5 138 87.7
DCAR_014568 Daucus carota HOM05D004660 ORTHO05D005474 6.4e-68 260.8 146 83.6
BraA06t25770Z Brassica rapa HOM05D004660 ORTHO05D005474 8.4e-68 260.4 146 80.8
Migut.F00125 Erythranthe guttata HOM05D004660 ORTHO05D005474 1.1e-67 260.0 146 81.5
FvH4_7g33300 Fragaria vesca HOM05D004660 ORTHO05D005474 1.1e-67 260.0 146 81.5
FAN10G1296 Fragaria x ananassa HOM05D004660 ORTHO05D005474 1.4e-67 259.6 146 81.5
FAN10G4080 Fragaria x ananassa HOM05D004660 ORTHO05D005474 1.4e-67 259.6 146 81.5
Oeu055424.1 Olea europaea HOM05D004660 ORTHO05D005474 1.4e-67 259.6 146 80.1
FAN01G2536 Fragaria x ananassa HOM05D004660 ORTHO05D005474 1.9e-67 259.2 146 82.2
LjContig00155g0012911 Lotus japonicus HOM05D004660 ORTHO05D005474 2.4e-67 258.8 146 82.2
Psat2g060520 Pisum sativum HOM05D004660 ORTHO05D005474 2.4e-67 258.8 147 83.7
Psat7g096840 Pisum sativum HOM05D004660 ORTHO05D005474 2.4e-67 258.8 147 83.7
TWI39G0024 Tripterygium wilfordii HOM05D004660 ORTHO05D005474 3.2e-67 258.5 146 81.5
Prupe.2G321900 Prunus persica HOM05D004660 ORTHO05D005474 5.4e-67 257.7 146 82.9
Sp5g12560 Schrenkiella parvula HOM05D004660 ORTHO05D005474 5.4e-67 257.7 146 80.1
CANSAT21G0927 Cannabis sativa HOM05D004660 ORTHO05D005474 7.1e-67 257.3 150 84.0
LjContig00312_ERROPOS870357g0003416 Lotus japonicus HOM05D004660 ORTHO05D005474 9.3e-67 256.9 147 82.3
Sp2g22770 Schrenkiella parvula HOM05D004660 ORTHO05D005474 1.2e-66 256.5 149 81.9
A06p28270 Brassica napus HOM05D004660 ORTHO05D005474 1.6e-66 256.1 146 80.1
Ca_05550_v3 Cicer arietinum L. HOM05D004660 ORTHO05D005474 1.6e-66 256.1 146 82.2
Hma1.2p1_0415F.1_g148340 Hydrangea macrophylla HOM05D004660 ORTHO05D005474 1.6e-66 256.1 148 81.1
Potri.012G004900 Populus trichocarpa HOM05D004660 ORTHO05D005474 2.1e-66 255.8 148 80.4
TPR.G27918 Trifolium pratense HOM05D004660 ORTHO05D005474 2.1e-66 255.8 148 83.8
AL5G29390 Arabidopsis lyrata HOM05D004660 ORTHO05D005474 2.7e-66 255.4 147 81.6
Peaxi162Scf01026g00258 Petunia axillaris HOM05D004660 ORTHO05D005474 2.7e-66 255.4 137 86.1
TWI23G0412 Tripterygium wilfordii HOM05D004660 ORTHO05D005474 3.5e-66 255.0 146 80.1
SGA_v2.0_scaffold44G16872 Striga asiatica HOM05D004660 ORTHO05D005474 4.6e-66 254.6 147 78.2
Psat5g071200 Pisum sativum HOM05D004660 ORTHO05D005474 6.0e-66 254.2 148 82.4
DCAR_020388 Daucus carota HOM05D004660 ORTHO05D005474 7.8e-66 253.8 146 81.5
RcHm_v2.0_Chr1g0383281 Rosa chinensis HOM05D004660 ORTHO05D005474 1.3e-65 253.1 147 80.3
ClCG07G009740 Citrullus lanatus HOM05D004660 ORTHO05D005474 1.7e-65 252.7 146 80.1
Sed0002848 Sechium edule HOM05D004660 ORTHO05D005474 1.7e-65 252.7 146 79.5
Carub.0006s2247 Capsella rubella HOM05D004660 ORTHO05D005474 2.3e-65 252.3 149 81.9
Thhalv10005081m.g Eutrema salsugineum HOM05D004660 ORTHO05D005474 2.3e-65 252.3 149 81.2
Aqoxy5G04391 Aquilegia oxysepala HOM05D004660 ORTHO05D005474 5.1e-65 251.1 148 79.1
Oeu061046.1 Olea europaea HOM05D004660 ORTHO05D005474 6.6e-65 250.8 146 78.8
Sed0024142 Sechium edule HOM05D004660 ORTHO05D005474 6.6e-65 250.8 146 79.5
TAR629G0239 Trochodendron aralioides HOM05D004660 ORTHO05D005474 6.6e-65 250.8 146 80.1
Lj3P891T43 Lonicera japonica HOM05D004660 ORTHO05D005474 8.7e-65 250.4 146 80.1
Medtr5g068660 Medicago truncatula HOM05D004660 ORTHO05D005474 1.1e-64 250.0 148 81.1
CsaV3_4G009710 Cucumis sativus L. HOM05D004660 ORTHO05D005474 1.5e-64 249.6 146 78.8
Gohir.A12G244500 Gossypium hirsutum HOM05D004660 ORTHO05D005474 4.3e-64 248.1 132 87.1
Gorai.008G263000 Gossypium raimondii HOM05D004660 ORTHO05D005474 4.3e-64 248.1 132 87.1
MBI12_g37476_MAGBIO Magnolia biondii HOM05D004660 ORTHO05D005474 4.3e-64 248.1 144 79.2
MELO3C024844.2 Cucumis melo HOM05D004660 ORTHO05D005474 7.3e-64 247.3 146 78.1
SalBow4G0874 Salvia bowleyana HOM05D004660 ORTHO05D005474 7.3e-64 247.3 146 76.0
Aa31LG11G3870 Aethionema arabicum HOM05D004660 ORTHO05D005474 1.3e-63 246.5 146 80.1
EL10Ac3g05134 Beta vulgaris HOM05D004660 ORTHO05D005474 1.3e-63 246.5 146 74.7
Migut.F00969 Erythranthe guttata HOM05D004660 ORTHO05D005474 1.3e-63 246.5 147 78.2
SGA_v2.0_scaffold18G08494 Striga asiatica HOM05D004660 ORTHO05D005474 1.3e-63 246.5 143 76.9
FAN03G0846 Fragaria x ananassa HOM05D004660 ORTHO05D005474 2.8e-63 245.4 140 80.7
MD01G1231200 Malus domestica HOM05D004660 ORTHO05D005474 2.8e-63 245.4 146 78.1
Gohir.D12G245400 Gossypium hirsutum HOM05D004660 ORTHO05D005474 4.8e-63 244.6 132 86.4
HanXRQChr01g0002691 Helianthus annuus HOM05D004660 ORTHO05D005474 4.8e-63 244.6 151 78.8
AUR62005951 Chenopodium quinoa HOM05D004660 ORTHO05D005474 6.2e-63 244.2 146 74.0
Sc19g0000390 Simmondsia chinensis HOM05D004660 ORTHO05D005474 6.2e-63 244.2 146 76.0
AUR62028114 Chenopodium quinoa HOM05D004660 ORTHO05D005474 8.1e-63 243.8 146 74.0
A01p24630 Brassica napus HOM05D004660 ORTHO05D005474 2.4e-62 242.3 147 79.6
BraA01t02375Z Brassica rapa HOM05D004660 ORTHO05D005474 2.4e-62 242.3 147 79.6
AL6G36220 Arabidopsis lyrata HOM05D004660 ORTHO05D005474 3.1e-62 241.9 148 79.7
BcaC09g49961 Brassica carinata HOM05D004660 ORTHO05D005474 3.1e-62 241.9 147 80.3
BolC1t03007H Brassica oleracea HOM05D004660 ORTHO05D005474 3.1e-62 241.9 147 80.3
CARHR188840 Cardamine hirsuta HOM05D004660 ORTHO05D005474 3.1e-62 241.9 150 78.7
arahy.Tifrunner.gnm1.ann1.N0NSHG Arachis hypogaea HOM05D004660 ORTHO05D005474 5.3e-62 241.1 130 85.4
THA.LOC104799676 Tarenaya hassleriana HOM05D004660 ORTHO05D005474 2.6e-61 238.8 147 76.2
Ah.13g071030 Amaranthus hybridus HOM05D004660 ORTHO05D005474 7.6e-61 237.3 146 72.6
C03p65490 Brassica napus HOM05D004660 ORTHO05D005474 9.9e-61 236.9 131 80.9
AT5G24610 Arabidopsis thaliana HOM05D004660 ORTHO05D005474 3.8e-60 235.0 147 79.6
Manes.01G050300 Manihot esculenta HOM05D004660 ORTHO05D005474 6.4e-60 234.2 125 84.0
Carub.0005s1588 Capsella rubella HOM05D004660 ORTHO05D005474 1.1e-59 233.4 139 79.1
AT3G49550 Arabidopsis thaliana HOM05D004660 ORTHO05D005474 2.4e-59 232.3 150 76.7
BcaNung01246 Brassica carinata HOM05D004660 ORTHO05D005474 4.2e-59 231.5 150 76.7
unitig_92.g28236 Utricularia gibba HOM05D004660 ORTHO05D005474 1.6e-58 229.6 146 69.2
Ah.13g069080 Amaranthus hybridus HOM05D004660 ORTHO05D005474 1.3e-57 226.5 146 69.9
A06p35410 Brassica napus HOM05D004660 ORTHO05D005474 1.3e-57 226.5 150 74.7
BraA06t26464Z Brassica rapa HOM05D004660 ORTHO05D005474 1.3e-57 226.5 150 74.7
BcaC03g17953 Brassica carinata HOM05D004660 ORTHO05D005474 1.8e-57 226.1 150 75.3
C02p60130 Brassica napus HOM05D004660 ORTHO05D005474 1.8e-57 226.1 150 75.3
BolC2t12069H Brassica oleracea HOM05D004660 ORTHO05D005474 1.8e-57 226.1 150 75.3
ATR0579G143 Amborella trichopoda HOM05D004660 ORTHO05D005474 2.3e-57 225.7 147 72.1
CSS0045456 Camellia sinensis var. sinensis HOM05D004660 ORTHO05D005474 3.9e-57 224.9 117 87.2
BcaB07g29917 Brassica carinata HOM05D004660 ORTHO05D005474 5.1e-57 224.6 150 77.3
A02p40180 Brassica napus HOM05D004660 ORTHO05D005474 6.7e-57 224.2 150 75.3
BraA02t08983Z Brassica rapa HOM05D004660 ORTHO05D005474 8.7e-57 223.8 150 75.3
arahy.Tifrunner.gnm1.ann1.0Y4BRG Arachis hypogaea HOM05D004660 ORTHO05D005474 1.5e-56 223.0 132 81.8
unitig_37.g11998 Utricularia gibba HOM05D004660 ORTHO05D005474 1.9e-56 222.6 146 67.8
CARHR158560 Cardamine hirsuta HOM05D004660 ORTHO05D005474 1.6e-55 219.5 151 69.5
Zm00001eb220600 Zea mays HOM05D004660 ORTHO05D005474 8.1e-55 217.2 146 70.5
BcaNung02008 Brassica carinata HOM05D004660 ORTHO05D005474 1.4e-54 216.5 148 73.6
C07p43100 Brassica napus HOM05D004660 ORTHO05D005474 1.4e-54 216.5 148 73.6
BolC7t44836H Brassica oleracea HOM05D004660 ORTHO05D005474 1.4e-54 216.5 148 73.6
Lsat_1_v5_gn_6_117240 Lactuca sativa HOM05D004660 ORTHO05D005474 1.4e-54 216.5 150 73.3
RcHm_v2.0_Chr4g0433201 Rosa chinensis HOM05D004660 ORTHO05D005474 3.4e-53 211.8 123 79.7
Nn3g18745 Nelumbo nucifera HOM05D004660 ORTHO05D005474 2.2e-52 209.1 134 74.6
Os10g0509100 Oryza sativa ssp. japonica HOM05D004660 ORTHO05D005474 6.4e-52 207.6 146 68.5
Zm00001eb043850 Zea mays HOM05D004660 ORTHO05D005474 6.0e-50 201.1 146 66.4
Cc02_g00620 Coffea canephora HOM05D004660 ORTHO05D005474 9.0e-46 187.2 146 65.8
Medtr3g093320 Medicago truncatula HOM05D004660 ORTHO05D005474 4.9e-44 181.4 146 67.1
CSS0032658 Camellia sinensis var. sinensis HOM05D004660 ORTHO05D005474 3.2e-43 178.7 146 65.8
BcaC01g02416 Brassica carinata HOM05D004660 ORTHO05D005474 7.1e-43 177.6 101 80.2
MD07G1303200 Malus domestica HOM05D004660 ORTHO05D005474 3.9e-41 171.8 101 80.2
SalBow2G1279 Salvia bowleyana HOM05D004660 ORTHO05D005474 2.2e-39 166.0 97 83.5
SEGI_20417 Sequoiadendron giganteum HOM05D004660 ORTHO05D005474 2.2e-36 156.0 148 55.4
Mapoly0204s0014 Marchantia polymorpha HOM05D004660 ORTHO05D005474 2.3e-33 146.0 122 59.0
Aa31LG4G18040 Aethionema arabicum HOM05D004660 ORTHO05D005474 2.1e-26 122.9 127 55.1
Actinidia08719 Actinidia chinensis HOM05D004660 ORTHO05D005474 6.1e-26 121.3 67 86.6
DCAR_001793 Daucus carota HOM05D000001 ORTHO05D000003 1.8e-25 119.8 75 78.7
SMO351G0342 Selaginella moellendorffii HOM05D004660 ORTHO05D005474 4.4e-24 115.2 166 42.8
AagrBONN_evm.TU.Sc2ySwM_117.1216 Anthoceros agrestis HOM05D004660 ORTHO05D005474 5.5e-19 98.2 90 52.2
arahy.Tifrunner.gnm1.ann1.RHW5C7 Arachis hypogaea HOM05D017329 ORTHO05D005474 6.5e-12 74.7 37 83.8
Cre07.g345800 Chlamydomonas reinhardtii HOM05D004660 ORTHO05D005474 5.5e-11 71.6 92 41.3
PRCOL_00007052 Prasinoderma coloniale HOM05D004660 ORTHO05D005474 3.7e-07 58.9 75 40.0
Peaxi162Scf00050g02313 Petunia axillaris HOM05D004162 ORTHO05D004543 9.1e-06 54.3 76 43.4


User provided reference genes

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