Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc3.164 Carica papaya HOM05D006657 ORTHO05D005964 0.0e+00 2159.4 1073 100.0
QL09p006779 Quercus lobata HOM05D006657 ORTHO05D005964 2.6e-97 361.3 1273 28.7
Haze_00307 Corylus avellana HOM05D006657 ORTHO05D005964 4.8e-96 357.1 1256 29.5
Cfa016147 Carpinus fangiana HOM05D006657 ORTHO05D005964 9.1e-95 352.8 1248 29.5
GSVIVG01038660001 Vitis vinifera HOM05D006657 ORTHO05D005964 3.8e-85 320.9 1280 28.4
Manes.01G044100 Manihot esculenta HOM05D006657 ORTHO05D005964 2.1e-83 315.1 1234 28.1
Cpa.g.sc9.388 Carica papaya HOM05D006657 ORTHO05D005964 1.2e-81 309.3 341 57.5
Duzib205G0597 Durio zibethinus HOM05D006657 ORTHO05D005964 1.5e-76 292.4 1195 28.4
Dinv17292 Davidia involucrata HOM05D006657 ORTHO05D005964 2.5e-76 291.6 1168 28.9
CiPaw.05G206100 Carya illinoinensis HOM05D006657 ORTHO05D005964 4.7e-75 287.3 1289 27.8
Thecc.03G210000 Theobroma cacao HOM05D006657 ORTHO05D005964 4.7e-75 287.3 1229 28.1
Potri.015G003700 Populus trichocarpa HOM05D006657 ORTHO05D005964 3.0e-74 284.6 1288 28.3
Prupe.2G320100 Prunus persica HOM05D006657 ORTHO05D005964 2.6e-73 281.6 1274 27.8
Duzib084G0166 Durio zibethinus HOM05D006657 ORTHO05D005964 1.9e-71 275.4 1187 27.8
Potri.012G007000 Populus trichocarpa HOM05D006657 ORTHO05D005964 5.6e-68 263.8 1236 28.2
Sabra12G0004100 Salix brachista HOM05D006657 ORTHO05D005964 1.1e-66 259.6 1289 28.6
Sabra15G0002400 Salix brachista HOM05D006657 ORTHO05D005964 2.6e-65 255.0 1289 28.4
Sabra12G0008600 Salix brachista HOM05D006657 ORTHO05D005964 1.3e-64 252.7 1265 28.5
Ciclev10018632m.g Citrus clementina HOM05D006657 ORTHO05D005964 5.4e-63 247.3 1247 26.9
Actinidia34275 Actinidia chinensis HOM05D006657 ORTHO05D005964 1.2e-62 246.1 1357 26.2
FvH4_7g33030 Fragaria vesca HOM05D006657 ORTHO05D005964 1.2e-62 246.1 1266 26.5
COL.COLO4_14382 Corchorus olitorius HOM05D006657 ORTHO05D005964 3.5e-62 244.6 1161 27.1
Atru.chr12.2479 Acer truncatum HOM05D006657 ORTHO05D005964 2.3e-61 241.9 914 27.9
Duzib068G0081 Durio zibethinus HOM05D006657 ORTHO05D005964 4.3e-60 237.7 1171 27.0
FAN03G1526 Fragaria x ananassa HOM05D006657 ORTHO05D005964 2.0e-57 228.8 1282 26.3
FAN10G2847 Fragaria x ananassa HOM05D006657 ORTHO05D005964 4.4e-57 227.6 1265 26.2
FAN10G1617 Fragaria x ananassa HOM05D006657 ORTHO05D005964 7.5e-57 226.9 1262 25.9
Dinv29204 Davidia involucrata HOM05D006657 ORTHO05D005964 2.4e-55 221.9 1033 29.4
Gohir.D08G117100 Gossypium hirsutum HOM05D006657 ORTHO05D005964 1.2e-54 219.5 1174 25.8
CSS0010102 Camellia sinensis var. sinensis HOM05D006657 ORTHO05D005964 2.1e-54 218.8 1330 26.2
Gorai.004G125800 Gossypium raimondii HOM05D006657 ORTHO05D005964 1.3e-53 216.1 1201 26.0
TWI23G1261 Tripterygium wilfordii HOM05D006657 ORTHO05D005964 3.6e-51 208.0 1232 25.2
MD01G1229500 Malus domestica HOM05D006657 ORTHO05D005964 4.4e-49 201.1 1227 25.8
RcHm_v2.0_Chr1g0383041 Rosa chinensis HOM05D006657 ORTHO05D005964 3.8e-48 198.0 1175 26.6
MD07G1301500 Malus domestica HOM05D006657 ORTHO05D005964 6.4e-48 197.2 1236 24.9
CANSAT21G0900 Cannabis sativa HOM05D006657 ORTHO05D005964 3.2e-47 194.9 1232 25.6
TAR374G0213 Trochodendron aralioides HOM05D006657 ORTHO05D005964 1.1e-44 186.4 942 26.3
TAR375G0071 Trochodendron aralioides HOM05D006657 ORTHO05D005964 9.6e-44 183.3 944 26.8
Oeu055400.1 Olea europaea HOM05D006657 ORTHO05D005964 9.6e-36 156.8 932 25.3
Gohir.A08G105800 Gossypium hirsutum HOM05D006657 ORTHO05D005964 4.8e-35 154.5 649 28.2
TWI14G0251 Tripterygium wilfordii HOM05D006657 ORTHO05D005964 3.0e-29 135.2 450 30.4
Actinidia08706 Actinidia chinensis HOM05D006657 ORTHO05D005964 1.1e-28 133.3 1065 24.0
vmacro06453 Vaccinium macrocarpon HOM05D006657 ORTHO05D005964 1.5e-28 132.9 887 25.3
Nn1g05264 Nelumbo nucifera HOM05D006657 ORTHO05D005964 1.9e-28 132.5 909 24.8
vmacro10166 Vaccinium macrocarpon HOM05D006657 ORTHO05D005964 1.9e-28 132.5 865 26.0
Rhsim09G0210400 Rhododendron simsii HOM05D006657 ORTHO05D005964 1.3e-27 129.8 880 26.5
CiPaw.06G040100 Carya illinoinensis HOM05D006657 ORTHO05D005964 9.0e-26 123.6 436 30.0
Sc13g0010540 Simmondsia chinensis HOM05D006657 ORTHO05D005964 1.9e-23 115.9 1184 24.0
FAN01G2018 Fragaria x ananassa HOM05D006657 ORTHO05D005964 4.6e-22 111.3 472 28.6
Sopen03g021870 Solanum pennellii HOM05D006657 ORTHO05D005964 4.6e-22 111.3 915 23.8
Migut.F00140 Erythranthe guttata HOM05D006657 ORTHO05D005964 1.8e-21 109.4 855 24.8
PGSC0003DMG400000558 Solanum tuberosum HOM05D006657 ORTHO05D005964 3.0e-21 108.6 896 24.8
TAR629G3494 Trochodendron aralioides HOM05D006657 ORTHO05D005964 5.6e-20 104.4 470 26.8
Cc07_g20200 Coffea canephora HOM05D006657 ORTHO05D005964 1.3e-19 103.2 1137 22.8
Rhsim03G0216600 Rhododendron simsii HOM05D006657 ORTHO05D005964 1.3e-19 103.2 862 23.5
Solyc03g080140.3 Solanum lycopersicum HOM05D006657 ORTHO05D005964 1.3e-19 103.2 905 23.9
TAR629G2606 Trochodendron aralioides HOM05D006657 ORTHO05D005964 3.1e-18 98.6 514 26.7
Lj1A1029T62 Lonicera japonica HOM05D006657 ORTHO05D005964 6.9e-18 97.4 487 26.7
Glyma.06G138000 Glycine max HOM05D006657 ORTHO05D005964 1.2e-17 96.7 459 25.5
arahy.Tifrunner.gnm1.ann1.UMZ78C Arachis hypogaea HOM05D006657 ORTHO05D005964 2.6e-17 95.5 998 21.9
CAN.G303.40 Capsicum annuum HOM05D006657 ORTHO05D005964 5.8e-17 94.4 904 23.7
Oeu029332.2 Olea europaea HOM05D006657 ORTHO05D005964 4.9e-16 91.3 380 26.1
Peaxi162Scf00912g00114 Petunia axillaris HOM05D006657 ORTHO05D005964 1.1e-15 90.1 885 24.3
Lj1g0002697 Lotus japonicus HOM05D006657 ORTHO05D005964 7.1e-15 87.4 435 28.0
DCAR_008990 Daucus carota HOM05D006657 ORTHO05D005964 9.3e-15 87.0 897 23.3
PGR042G1854 Punica granatum HOM05D006657 ORTHO05D005964 1.2e-14 86.7 1186 21.2
CsaV3_4G008600 Cucumis sativus L. HOM05D006657 ORTHO05D005964 1.0e-13 83.6 1121 22.2
Medtr3g093000 Medicago truncatula HOM05D006657 ORTHO05D005964 1.8e-13 82.8 427 25.5
arahy.Tifrunner.gnm1.ann1.UB23H3 Arachis hypogaea HOM05D006657 ORTHO05D005964 3.0e-13 82.0 1005 21.2
SalBow4G2934 Salvia bowleyana HOM05D006657 ORTHO05D005964 5.1e-13 81.3 876 22.5
SGA_v2.0_scaffold44G16853 Striga asiatica HOM05D006657 ORTHO05D005964 5.1e-13 81.3 836 24.4
Atru.chr12.2480 Acer truncatum HOM05D006657 ORTHO05D005964 6.7e-13 80.9 264 30.7
BcaC01g02410 Brassica carinata HOM05D009821 ORTHO05D005964 1.1e-12 80.1 60 63.3
C03p65560 Brassica napus HOM05D009821 ORTHO05D005964 1.1e-12 80.1 60 63.3
BolC3t18811H Brassica oleracea HOM05D009821 ORTHO05D005964 1.1e-12 80.1 60 63.3
ECA233G2144 Erigeron canadensis HOM05D006657 ORTHO05D005964 1.1e-12 80.1 750 24.7
THA.LOC104799674 Tarenaya hassleriana HOM05D009821 ORTHO05D005964 1.5e-12 79.7 87 49.4
CARHR158490 Cardamine hirsuta HOM05D009821 ORTHO05D005964 2.5e-12 79.0 76 53.9
Sed0019147 Sechium edule HOM05D006657 ORTHO05D005964 3.3e-12 78.6 1107 22.5
BcaB02g09591 Brassica carinata HOM05D009821 ORTHO05D005964 4.3e-12 78.2 60 61.7
Psat5g071280 Pisum sativum HOM05D006657 ORTHO05D005964 4.3e-12 78.2 418 25.8
A06p28240 Brassica napus HOM05D009821 ORTHO05D005964 9.7e-12 77.0 60 61.7
BraA06t25767Z Brassica rapa HOM05D009821 ORTHO05D005964 9.7e-12 77.0 60 61.7
SalBow4G2342 Salvia bowleyana HOM05D006657 ORTHO05D005964 9.7e-12 77.0 84 50.0
Nitab4.5_0006821g0010 Nicotiana tabacum HOM05D006657 ORTHO05D005964 1.3e-11 76.6 922 24.1
HanXRQChr08g0226001 Helianthus annuus HOM05D006657 ORTHO05D005964 1.6e-11 76.3 369 23.6
AT3G49490 Arabidopsis thaliana HOM05D009821 ORTHO05D005964 2.2e-11 75.9 75 52.0
Cc00_g14340 Coffea canephora HOM05D006657 ORTHO05D005964 4.8e-11 74.7 60 65.0
A01p24720 Brassica napus HOM05D009821 ORTHO05D005964 6.3e-11 74.3 60 56.7
BraA01t02384Z Brassica rapa HOM05D009821 ORTHO05D005964 6.3e-11 74.3 60 56.7
Ca_16789_v3 Cicer arietinum L. HOM05D006657 ORTHO05D005964 6.3e-11 74.3 54 64.8
Ca_16805_v3 Cicer arietinum L. HOM05D006657 ORTHO05D005964 6.3e-11 74.3 54 64.8
Lalb_Chr23g0272001 Lupinus albus HOM05D006657 ORTHO05D005964 6.3e-11 74.3 88 46.6
Nitab4.5_0000021g0080 Nicotiana tabacum HOM05D006657 ORTHO05D005964 6.3e-11 74.3 917 24.0
VMungo1309G0886 Vigna mungo HOM05D006657 ORTHO05D005964 6.3e-11 74.3 404 25.7
Carub.0005s1582 Capsella rubella HOM05D009821 ORTHO05D005964 8.2e-11 73.9 66 51.5
Phvul.009G038600 Phaseolus vulgaris HOM05D006657 ORTHO05D005964 8.2e-11 73.9 411 24.8
Sp5g12600 Schrenkiella parvula HOM05D009821 ORTHO05D005964 1.1e-10 73.6 60 60.0
BcaB05g23119 Brassica carinata HOM05D009821 ORTHO05D005964 1.4e-10 73.2 60 58.3
C01p30840 Brassica napus HOM05D009821 ORTHO05D005964 1.8e-10 72.8 61 55.7
C08p24510 Brassica napus HOM05D009821 ORTHO05D005964 2.4e-10 72.4 60 58.3
Aa31LG11G3790 Aethionema arabicum HOM05D009821 ORTHO05D005964 3.1e-10 72.0 60 58.3
BcaB01g00702 Brassica carinata HOM05D009821 ORTHO05D005964 3.1e-10 72.0 61 60.7
BcaC07g39413 Brassica carinata HOM05D009821 ORTHO05D005964 3.1e-10 72.0 80 50.0
BcaC09g49952 Brassica carinata HOM05D009821 ORTHO05D005964 3.1e-10 72.0 51 64.7
A06p18270 Brassica napus HOM05D009821 ORTHO05D005964 3.1e-10 72.0 75 49.3
BolC1t03016H Brassica oleracea HOM05D009821 ORTHO05D005964 3.1e-10 72.0 51 64.7
BraA06t24910Z Brassica rapa HOM05D009821 ORTHO05D005964 3.1e-10 72.0 75 49.3
BolC8t50069H Brassica oleracea HOM05D009821 ORTHO05D005964 4.1e-10 71.6 80 50.0
DCAR_020382 Daucus carota HOM05D006657 ORTHO05D005964 6.9e-10 70.9 915 23.2
Aqoxy5G04358 Aquilegia oxysepala HOM05D006657 ORTHO05D005964 1.2e-09 70.1 868 21.8
Glyma.04G227100 Glycine max HOM05D006657 ORTHO05D005964 1.2e-09 70.1 98 39.8
AL5G29280 Arabidopsis lyrata HOM05D009821 ORTHO05D005964 2.0e-09 69.3 182 31.9
SGA_v2.0_scaffold18G08476 Striga asiatica HOM05D006657 ORTHO05D005964 2.0e-09 69.3 100 41.0
Ah.07g204540 Amaranthus hybridus HOM05D006657 ORTHO05D005964 2.6e-09 68.9 60 60.0
Lalb_Chr11g0067471 Lupinus albus HOM05D006657 ORTHO05D005964 2.6e-09 68.9 88 44.3
Eucgr.K00044 Eucalyptus grandis HOM05D006657 ORTHO05D005964 7.7e-09 67.4 132 34.8
Lsat_1_v5_gn_2_134840 Lactuca sativa HOM05D006657 ORTHO05D005964 2.2e-08 65.9 781 23.0
Ah.13g070870 Amaranthus hybridus HOM05D006657 ORTHO05D005964 2.9e-08 65.5 58 60.3
Eucgr.A00967 Eucalyptus grandis HOM05D006657 ORTHO05D005964 2.9e-08 65.5 492 22.2
Potri.002G230100 Populus trichocarpa HOM05D006657 ORTHO05D005964 2.9e-08 65.5 75 50.7
AUR62005972 Chenopodium quinoa HOM05D006657 ORTHO05D005964 3.8e-08 65.1 53 62.3
AUR62028098 Chenopodium quinoa HOM05D006657 ORTHO05D005964 5.0e-08 64.7 75 50.7
Potri.003G206701 Populus trichocarpa HOM05D006657 ORTHO05D005964 5.0e-08 64.7 75 49.3
EL10Ac3g05155 Beta vulgaris HOM05D006657 ORTHO05D005964 6.5e-08 64.3 77 50.6
MBI04_g41177_MAGBIO Magnolia biondii HOM05D006657 ORTHO05D005964 6.5e-08 64.3 200 32.5
THA.LOC104803312 Tarenaya hassleriana HOM05D009821 ORTHO05D005964 1.4e-07 63.2 56 51.8
unitig_0.g2439 Utricularia gibba HOM05D006657 ORTHO05D005964 1.4e-07 63.2 68 48.5
Cpa.g.sc3.425 Carica papaya HOM05D025056 ORTHO05D005964 1.9e-07 62.8 39 79.5
Potri.001G452300 Populus trichocarpa HOM05D011672 ORTHO05D011012 1.9e-07 62.8 75 49.3
Potri.004G080501 Populus trichocarpa HOM05D006657 ORTHO05D005964 4.2e-07 61.6 75 49.3
CDE02G0079 Ceratophyllum demersum HOM05D006657 ORTHO05D005964 9.4e-07 60.5 97 41.2
MSTRG.26967 Avicennia marina HOM05D006657 ORTHO05D005964 1.2e-06 60.1 906 22.3
Lj1P1029T48 Lonicera japonica HOM05D006657 ORTHO05D005964 1.2e-06 60.1 129 36.4
TPR.G33400 Trifolium pratense HOM05D006657 ORTHO05D005964 1.2e-06 60.1 324 25.3
MBI12_g20086_MAGBIO Magnolia biondii HOM05D006657 ORTHO05D005964 2.7e-06 58.9 331 24.2
Hund23980 Selenicereus undatus HOM05D006657 ORTHO05D005964 2.7e-06 58.9 253 29.6
PSO782G1897 Papaver somniferum HOM05D006657 ORTHO05D005964 3.6e-06 58.5 396 24.0
MBI04_g37612_MAGBIO Magnolia biondii HOM05D006657 ORTHO05D005964 4.6e-06 58.2 200 31.0
PSO170G0737 Papaver somniferum HOM05D006657 ORTHO05D005964 4.6e-06 58.2 396 24.0


User provided reference genes

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