Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc3.150 Carica papaya HOM05D005840 ORTHO05D007144 1.2e-169 599.7 298 100.0
TWI14G0550 Tripterygium wilfordii HOM05D005840 ORTHO05D007144 1.9e-95 353.2 272 66.2
Thecc.03G209000 Theobroma cacao HOM05D005840 ORTHO05D007144 5.6e-95 351.7 299 62.5
Dinv35383 Davidia involucrata HOM05D005840 ORTHO05D007144 8.1e-94 347.8 288 63.9
PGSC0003DMG400000562 Solanum tuberosum HOM05D005840 ORTHO05D007144 1.2e-92 344.0 293 60.4
Manes.01G043400 Manihot esculenta HOM05D005840 ORTHO05D007144 2.0e-92 343.2 296 60.8
Solyc03g081220.1 Solanum lycopersicum HOM05D005840 ORTHO05D007144 7.6e-92 341.3 293 59.7
PGR042G3207 Punica granatum HOM05D005840 ORTHO05D007144 1.0e-91 340.9 294 61.2
QL09p007163 Quercus lobata HOM05D005840 ORTHO05D007144 1.0e-91 340.9 278 65.1
CSS0020402 Camellia sinensis var. sinensis HOM05D005840 ORTHO05D007144 1.7e-91 340.1 279 64.5
TAR375G0732 Trochodendron aralioides HOM05D005840 ORTHO05D007144 2.9e-91 339.3 303 61.7
Potri.015G002500 Populus trichocarpa HOM05D005840 ORTHO05D007144 3.8e-91 339.0 300 60.3
Sopen03g021950 Solanum pennellii HOM05D005840 ORTHO05D007144 8.4e-91 337.8 294 59.2
Duzib084G0063 Durio zibethinus HOM05D005840 ORTHO05D007144 7.1e-90 334.7 291 61.5
Sabra15G0001600 Salix brachista HOM05D005840 ORTHO05D007144 1.2e-89 334.0 268 63.8
Sp2g22870 Schrenkiella parvula HOM05D005840 ORTHO05D007144 1.6e-89 333.6 302 59.9
Prupe.2G319100 Prunus persica HOM05D005840 ORTHO05D007144 2.7e-89 332.8 299 60.9
Nn3g18788 Nelumbo nucifera HOM05D005840 ORTHO05D007144 6.0e-89 331.6 277 62.5
RcHm_v2.0_Chr1g0382901 Rosa chinensis HOM05D005840 ORTHO05D007144 7.9e-89 331.3 298 62.8
CARHR188950 Cardamine hirsuta HOM05D005840 ORTHO05D007144 1.3e-88 330.5 305 58.7
AL6G36040 Arabidopsis lyrata HOM05D005840 ORTHO05D007144 1.8e-88 330.1 306 59.5
Thhalv10005309m.g Eutrema salsugineum HOM05D005840 ORTHO05D007144 6.7e-88 328.2 306 58.2
Aa31LG11G3710 Aethionema arabicum HOM05D005840 ORTHO05D007144 8.7e-88 327.8 306 58.5
CAN.G303.23 Capsicum annuum HOM05D005840 ORTHO05D007144 8.7e-88 327.8 294 58.5
TPR.G33360 Trifolium pratense HOM05D005840 ORTHO05D007144 3.3e-87 325.9 305 57.7
Lalb_Chr23g0271941 Lupinus albus HOM05D005840 ORTHO05D007144 5.7e-87 325.1 304 56.9
CANSAT21G1965 Cannabis sativa HOM05D005840 ORTHO05D007144 7.4e-87 324.7 299 59.2
Psat5g071840 Pisum sativum HOM05D005840 ORTHO05D007144 7.4e-87 324.7 306 58.2
THA.LOC104798983 Tarenaya hassleriana HOM05D005840 ORTHO05D007144 9.6e-87 324.3 304 60.2
Nitab4.5_0000319g0020 Nicotiana tabacum HOM05D005840 ORTHO05D007144 1.6e-86 323.6 295 59.0
Atru.chr12.2435 Acer truncatum HOM05D005840 ORTHO05D007144 2.1e-86 323.2 301 61.5
Nitab4.5_0010809g0010 Nicotiana tabacum HOM05D005840 ORTHO05D007144 2.8e-86 322.8 295 58.6
Ciclev10021557m.g Citrus clementina HOM05D005840 ORTHO05D007144 3.7e-86 322.4 294 63.3
Gorai.004G125300 Gossypium raimondii HOM05D005840 ORTHO05D007144 6.3e-86 321.6 299 61.2
A06p35290 Brassica napus HOM05D005840 ORTHO05D007144 1.1e-85 320.9 301 58.1
A09p06480 Brassica napus HOM05D005840 ORTHO05D007144 1.1e-85 320.9 306 57.5
AT5G24460 Arabidopsis thaliana HOM05D005840 ORTHO05D007144 1.4e-85 320.5 306 57.5
Ca_16781_v3 Cicer arietinum L. HOM05D005840 ORTHO05D007144 1.8e-85 320.1 301 58.1
Medtr3g092810 Medicago truncatula HOM05D005840 ORTHO05D007144 1.8e-85 320.1 307 56.7
BcaNung01236 Brassica carinata HOM05D005840 ORTHO05D007144 2.4e-85 319.7 308 57.5
BraA09t36291Z Brassica rapa HOM05D005840 ORTHO05D007144 3.1e-85 319.3 306 56.9
Carub.0006s2229 Capsella rubella HOM05D005840 ORTHO05D007144 3.1e-85 319.3 303 59.4
Gohir.A08G104700 Gossypium hirsutum HOM05D005840 ORTHO05D007144 3.1e-85 319.3 299 61.2
Lalb_Chr08g0239571 Lupinus albus HOM05D005840 ORTHO05D007144 9.0e-85 317.8 307 56.0
BraA06t26455Z Brassica rapa HOM05D005840 ORTHO05D007144 1.2e-84 317.4 318 55.3
BcaC04g23543 Brassica carinata HOM05D005840 ORTHO05D007144 1.5e-84 317.0 306 56.5
C09p07230 Brassica napus HOM05D005840 ORTHO05D007144 1.5e-84 317.0 306 56.5
BolC9t53635H Brassica oleracea HOM05D005840 ORTHO05D007144 1.5e-84 317.0 306 56.9
Cc02_g00800 Coffea canephora HOM05D005840 ORTHO05D007144 1.5e-84 317.0 295 60.0
Sed0003210 Sechium edule HOM05D005840 ORTHO05D007144 2.0e-84 316.6 295 61.4
FvH4_7g32940 Fragaria vesca HOM05D005840 ORTHO05D007144 3.4e-84 315.8 302 59.9
MD07G1299300 Malus domestica HOM05D005840 ORTHO05D007144 1.0e-83 314.3 284 59.9
ClCG01G000060 Citrullus lanatus HOM05D005840 ORTHO05D007144 2.2e-83 313.2 236 66.5
DCAR_008987 Daucus carota HOM05D005840 ORTHO05D007144 2.9e-83 312.8 294 58.5
BcaB04g19821 Brassica carinata HOM05D005840 ORTHO05D007144 1.1e-82 310.8 227 67.4
C07p43220 Brassica napus HOM05D005840 ORTHO05D007144 1.1e-82 310.8 227 67.4
Gohir.A11G016700 Gossypium hirsutum HOM05D005840 ORTHO05D007144 1.1e-82 310.8 294 57.8
MELO3C005919.2 Cucumis melo HOM05D005840 ORTHO05D007144 1.9e-82 310.1 277 58.1
Gorai.007G017300 Gossypium raimondii HOM05D005840 ORTHO05D007144 2.5e-82 309.7 300 57.7
Gohir.D11G016500 Gossypium hirsutum HOM05D005840 ORTHO05D007144 5.5e-82 308.5 300 56.7
VMungo1309G2416 Vigna mungo HOM05D005840 ORTHO05D007144 5.5e-82 308.5 301 56.1
Lj1g0001826 Lotus japonicus HOM05D005840 ORTHO05D007144 1.2e-81 307.4 310 53.5
COL.COLO4_14373 Corchorus olitorius HOM05D005840 ORTHO05D007144 2.1e-81 306.6 214 70.1
Lsat_1_v5_gn_9_49980 Lactuca sativa HOM05D005840 ORTHO05D007144 2.7e-81 306.2 303 56.4
CiPaw.06G041000 Carya illinoinensis HOM05D005840 ORTHO05D007144 3.6e-81 305.8 212 69.8
CsaV3_5G000100 Cucumis sativus L. HOM05D005840 ORTHO05D007144 3.6e-81 305.8 271 59.4
FAN10G3655 Fragaria x ananassa HOM05D005840 ORTHO05D007144 6.1e-81 305.1 300 58.0
FAN10G0422 Fragaria x ananassa HOM05D005840 ORTHO05D007144 7.9e-81 304.7 301 58.5
MD01G1228500 Malus domestica HOM05D005840 ORTHO05D007144 7.9e-81 304.7 269 60.6
Oeu023690.1 Olea europaea HOM05D005840 ORTHO05D007144 7.9e-81 304.7 283 59.0
FAN03G2485 Fragaria x ananassa HOM05D005840 ORTHO05D007144 3.9e-80 302.4 299 57.9
Phvul.009G044800 Phaseolus vulgaris HOM05D005840 ORTHO05D007144 3.9e-80 302.4 309 54.7
Haze_00300 Corylus avellana HOM05D005840 ORTHO05D007144 1.5e-79 300.4 220 66.8
Glyma.06G136800 Glycine max HOM05D005840 ORTHO05D007144 1.9e-79 300.1 298 55.7
PSO063G5360 Papaver somniferum HOM05D005840 ORTHO05D007144 3.3e-79 299.3 308 55.2
Hma1.2p1_0094F.1_g047400 Hydrangea macrophylla HOM05D005840 ORTHO05D007144 4.3e-79 298.9 216 69.0
Glyma.04G228100 Glycine max HOM05D005840 ORTHO05D007144 6.3e-78 295.0 302 54.6
SGA_v2.0_scaffold18G08468 Striga asiatica HOM05D005840 ORTHO05D007144 2.4e-77 293.1 285 56.8
Peaxi162Scf00912g10012 Petunia axillaris HOM05D005840 ORTHO05D007144 9.0e-77 291.2 210 68.6
MSTRG.26975 Avicennia marina HOM05D005840 ORTHO05D007144 1.2e-76 290.8 279 55.6
Sc19g0000580 Simmondsia chinensis HOM05D005840 ORTHO05D007144 1.5e-76 290.4 276 55.4
FAN01G0139 Fragaria x ananassa HOM05D005840 ORTHO05D007144 2.0e-76 290.0 300 56.7
MSTRG.8611 Avicennia marina HOM05D005840 ORTHO05D007144 3.4e-76 289.3 303 53.5
Oeu055391.1 Olea europaea HOM05D005840 ORTHO05D007144 4.5e-76 288.9 221 66.1
MBI12_g45814_MAGBIO Magnolia biondii HOM05D005840 ORTHO05D007144 1.7e-75 287.0 306 53.6
HanXRQChr10g0305331 Helianthus annuus HOM05D005840 ORTHO05D007144 2.2e-75 286.6 297 55.6
AUR62028079 Chenopodium quinoa HOM05D005840 ORTHO05D007144 3.8e-75 285.8 316 54.4
Rhsim03G0215700 Rhododendron simsii HOM05D005840 ORTHO05D007144 5.0e-75 285.4 219 65.8
Migut.F00150 Erythranthe guttata HOM05D005840 ORTHO05D007144 6.5e-75 285.0 291 53.6
SalBow6G2506 Salvia bowleyana HOM05D005840 ORTHO05D007144 6.5e-75 285.0 285 54.4
PSO782G2283 Papaver somniferum HOM05D005840 ORTHO05D007144 2.5e-74 283.1 207 67.6
vmacro22785 Vaccinium macrocarpon HOM05D005840 ORTHO05D007144 2.5e-74 283.1 331 51.1
Lj3P895T18 Lonicera japonica HOM05D005840 ORTHO05D007144 1.2e-73 280.8 230 61.7
Actinidia34271 Actinidia chinensis HOM05D005840 ORTHO05D007144 1.6e-73 280.4 208 67.8
Lsat_1_v5_gn_2_135020 Lactuca sativa HOM05D005840 ORTHO05D007144 2.7e-73 279.6 294 52.7
Ah.13g070770 Amaranthus hybridus HOM05D005840 ORTHO05D007144 1.4e-72 277.3 307 51.5
AUR62005991 Chenopodium quinoa HOM05D005840 ORTHO05D007144 6.7e-72 275.0 316 53.2
ECA232G4892 Erigeron canadensis HOM05D005840 ORTHO05D007144 3.3e-71 272.7 214 61.2
unitig_37.g11995 Utricularia gibba HOM05D005840 ORTHO05D007144 5.7e-71 271.9 299 48.2
CDE04G1956 Ceratophyllum demersum HOM05D005840 ORTHO05D007144 9.1e-69 264.6 207 62.8
vmacro06444 Vaccinium macrocarpon HOM05D005840 ORTHO05D007144 4.5e-68 262.3 272 54.8
EL10Ac3g05171 Beta vulgaris HOM05D005840 ORTHO05D007144 7.7e-68 261.5 213 62.0
CDE12G0905 Ceratophyllum demersum HOM05D005840 ORTHO05D007144 7.7e-68 261.5 211 60.7
Aqoxy6G02459 Aquilegia oxysepala HOM05D005840 ORTHO05D007144 8.5e-67 258.1 217 60.8
Aqoxy6G02489 Aquilegia oxysepala HOM05D005840 ORTHO05D007144 8.5e-67 258.1 217 60.8
Sed0025728 Sechium edule HOM05D005840 ORTHO05D007144 5.5e-66 255.4 209 62.2
Cc11_g13290 Coffea canephora HOM05D005840 ORTHO05D007144 9.7e-63 244.6 236 59.3
Actinidia08699 Actinidia chinensis HOM05D005840 ORTHO05D007144 4.8e-62 242.3 214 59.8
unitig_92.g28240 Utricularia gibba HOM05D005840 ORTHO05D007144 1.3e-59 234.2 200 59.0
unitig_0.g2444 Utricularia gibba HOM05D005840 ORTHO05D007144 9.4e-58 228.0 200 56.5
BcaB04g19819 Brassica carinata HOM05D005840 ORTHO05D007144 6.1e-57 225.3 192 59.4
HPP92_022381 Vanilla planifolia HOM05D005840 ORTHO05D007144 8.8e-56 221.5 216 56.5
SHI02291 Sapria himalayana HOM05D005840 ORTHO05D007144 1.1e-53 214.5 211 55.9
SEGI_38224 Sequoiadendron giganteum HOM05D005840 ORTHO05D007144 4.1e-53 212.6 257 44.4
ATR0661G235 Amborella trichopoda HOM05D005840 ORTHO05D007144 1.1e-50 204.5 220 52.3
COL.COLO4_35601 Corchorus olitorius HOM05D005840 ORTHO05D007144 3.6e-41 172.9 209 46.4
Zm00001eb272540 Zea mays HOM05D005840 ORTHO05D007144 4.7e-41 172.6 221 48.9
Os06g0712200 Oryza sativa ssp. japonica HOM05D005840 ORTHO05D007144 1.4e-40 171.0 223 47.5
BcaNung02020 Brassica carinata HOM05D005840 ORTHO05D007144 5.2e-40 169.1 129 64.3
Mapoly0031s0111 Marchantia polymorpha HOM05D005840 ORTHO05D007144 1.2e-39 167.9 218 43.6
COL.COLO4_12096 Corchorus olitorius HOM05D005840 ORTHO05D007144 1.4e-37 161.0 178 51.1
SMO140G0013 Selaginella moellendorffii HOM05D005840 ORTHO05D007144 2.4e-37 160.2 217 42.4
Pp3c3_29470 Physcomitrium patens HOM05D005840 ORTHO05D007144 5.4e-37 159.1 237 41.8
CBR_g20004 Chara braunii HOM05D005840 ORTHO05D007144 1.1e-34 151.4 183 48.6
BcaB04g19822 Brassica carinata HOM05D005840 ORTHO05D007144 1.9e-34 150.6 122 61.5
Gohir.D08G116401 Gossypium hirsutum HOM05D005840 ORTHO05D007144 1.4e-29 134.4 118 59.3
Duzib114G0266 Durio zibethinus HOM05D005840 ORTHO05D007144 7.0e-21 105.5 137 45.3
SalBow4G0698 Salvia bowleyana HOM05D001856 ORTHO05D007144 4.6e-20 102.8 120 45.8
CAN.G2.4 Capsicum annuum HOM05D005840 ORTHO05D007144 3.3e-18 96.7 78 61.5
SalBow6G2140 Salvia bowleyana HOM05D005840 ORTHO05D007144 1.6e-17 94.4 61 65.6
Cre01.g012300 Chlamydomonas reinhardtii HOM05D005840 ORTHO05D007144 4.0e-16 89.7 149 40.3
MCO06G087 Micromonas commoda HOM05D005840 ORTHO05D007144 6.8e-16 89.0 171 36.3
COL.COLO4_35602 Corchorus olitorius HOM05D005840 ORTHO05D007144 7.1e-13 79.0 101 40.6
Potri.010G149800 Populus trichocarpa HOM05D005840 ORTHO05D007144 1.3e-11 74.7 78 46.2


User provided reference genes

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