Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc3.14 Carica papaya HOM05D005766 ORTHO05D007002 0.0e+00 1254.6 637 100.0
GSVIVG01028775001 Vitis vinifera HOM05D005766 ORTHO05D007002 5.3e-199 698.4 705 57.4
Cfa016332 Carpinus fangiana HOM05D005766 ORTHO05D007002 2.9e-197 692.6 707 57.3
Prupe.2G304700 Prunus persica HOM05D005766 ORTHO05D007002 1.9e-196 689.9 696 57.2
Duzib205G0439 Durio zibethinus HOM05D005766 ORTHO05D007002 2.1e-195 686.4 699 57.4
CANSAT21G0601 Cannabis sativa HOM05D005766 ORTHO05D007002 6.0e-195 684.9 700 58.3
Potri.015G026100 Populus trichocarpa HOM05D005766 ORTHO05D007002 5.6e-193 678.3 704 57.2
Thecc.03G188900 Theobroma cacao HOM05D005766 ORTHO05D007002 2.1e-192 676.4 700 56.4
TAR629G2087 Trochodendron aralioides HOM05D005766 ORTHO05D007002 1.1e-191 674.1 713 56.2
MD07G1282600 Malus domestica HOM05D005766 ORTHO05D007002 6.9e-191 671.4 724 55.2
Gohir.A12G254600 Gossypium hirsutum HOM05D005766 ORTHO05D007002 1.7e-189 666.8 701 56.3
Gorai.008G272400 Gossypium raimondii HOM05D005766 ORTHO05D007002 1.7e-189 666.8 700 56.6
Gohir.D12G254700 Gossypium hirsutum HOM05D005766 ORTHO05D007002 8.4e-189 664.5 701 56.1
PGR004G1861 Punica granatum HOM05D005766 ORTHO05D007002 4.3e-185 652.1 699 55.7
FAN06G2288 Fragaria x ananassa HOM05D005766 ORTHO05D007002 1.4e-183 647.1 644 58.2
CsaV3_3G021770 Cucumis sativus L. HOM05D005766 ORTHO05D007002 1.7e-181 640.2 697 53.5
Manes.14G020100 Manihot esculenta HOM05D005766 ORTHO05D007002 4.9e-181 638.6 675 55.1
FAN10G0167 Fragaria x ananassa HOM05D005766 ORTHO05D007002 6.5e-181 638.3 667 55.8
FAN10G3945 Fragaria x ananassa HOM05D005766 ORTHO05D007002 6.5e-181 638.3 667 55.8
Rhsim03G0196600 Rhododendron simsii HOM05D005766 ORTHO05D007002 4.2e-180 635.6 717 53.3
Nn1g01746 Nelumbo nucifera HOM05D005766 ORTHO05D007002 5.5e-180 635.2 710 53.9
MELO3C006963.2 Cucumis melo HOM05D005766 ORTHO05D007002 2.7e-179 632.9 699 54.1
ClCG05G008560 Citrullus lanatus HOM05D005766 ORTHO05D007002 8.7e-178 627.9 669 55.5
vmacro06594 Vaccinium macrocarpon HOM05D005766 ORTHO05D007002 1.1e-177 627.5 763 50.5
PSO170G0163 Papaver somniferum HOM05D005766 ORTHO05D007002 1.5e-177 627.1 707 51.8
Hma1.2p1_0327F.1_g126600 Hydrangea macrophylla HOM05D005766 ORTHO05D007002 1.1e-175 620.9 701 51.6
Lj1A1010T47 Lonicera japonica HOM05D005766 ORTHO05D007002 9.0e-175 617.8 682 54.5
Cc02_g02130 Coffea canephora HOM05D005766 ORTHO05D007002 1.2e-174 617.5 709 53.3
Phvul.007G077400 Phaseolus vulgaris HOM05D005766 ORTHO05D007002 6.5e-173 611.7 697 52.2
FAN03G2278 Fragaria x ananassa HOM05D005766 ORTHO05D007002 1.4e-172 610.5 684 52.8
Aqoxy5G04049 Aquilegia oxysepala HOM05D005766 ORTHO05D007002 1.3e-170 604.0 706 50.0
Hund04814 Selenicereus undatus HOM05D005766 ORTHO05D007002 1.1e-169 600.9 651 53.5
Eucgr.K00307 Eucalyptus grandis HOM05D005766 ORTHO05D007002 1.5e-169 600.5 693 51.8
Glyma.10G228700 Glycine max HOM05D005766 ORTHO05D007002 3.3e-169 599.4 698 51.4
Lj5g0016487 Lotus japonicus HOM05D005766 ORTHO05D007002 7.4e-169 598.2 700 52.3
Ah.07g206240 Amaranthus hybridus HOM05D005766 ORTHO05D007002 1.3e-168 597.4 710 51.3
Ciclev10004767m.g Citrus clementina HOM05D005766 ORTHO05D007002 4.8e-168 595.5 498 66.1
TPR.G7746 Trifolium pratense HOM05D005766 ORTHO05D007002 1.4e-167 594.0 699 52.4
Glyma.20G164300 Glycine max HOM05D005766 ORTHO05D007002 2.4e-167 593.2 697 50.8
Haze_00083 Corylus avellana HOM05D005766 ORTHO05D007002 5.3e-167 592.0 803 46.9
arahy.Tifrunner.gnm1.ann1.8957SA Arachis hypogaea HOM05D005766 ORTHO05D007002 5.9e-166 588.6 696 50.7
MD01G1212200 Malus domestica HOM05D005766 ORTHO05D007002 2.1e-163 580.1 695 49.9
FvH4_7g30700 Fragaria vesca HOM05D005766 ORTHO05D007002 1.1e-161 574.3 659 53.7
Sed0015140 Sechium edule HOM05D005766 ORTHO05D007002 1.5e-161 573.9 659 52.8
MBI07_g26934_MAGBIO Magnolia biondii HOM05D005766 ORTHO05D007002 1.5e-158 563.9 722 50.0
Lsat_1_v5_gn_2_61121 Lactuca sativa HOM05D005766 ORTHO05D007002 7.7e-158 561.6 702 47.9
Migut.F00259 Erythranthe guttata HOM05D005766 ORTHO05D007002 1.8e-154 550.4 696 47.4
CSS0024367 Camellia sinensis var. sinensis HOM05D005766 ORTHO05D007002 8.2e-152 541.6 507 60.6
SalBow4G0986 Salvia bowleyana HOM05D005766 ORTHO05D007002 1.4e-151 540.8 669 49.3
CSS0041625 Camellia sinensis var. sinensis HOM05D005766 ORTHO05D007002 4.1e-151 539.3 507 60.2
Sabra15G0019200 Salix brachista HOM05D005766 ORTHO05D007002 4.1e-151 539.3 704 49.3
FAN06G1885 Fragaria x ananassa HOM05D005766 ORTHO05D007002 1.2e-150 537.7 509 60.1
ATR1131G022 Amborella trichopoda HOM05D005766 ORTHO05D007002 4.5e-150 535.8 705 45.8
FAN01G0765 Fragaria x ananassa HOM05D005766 ORTHO05D007002 5.9e-150 535.4 509 60.1
Ca_10701_v3 Cicer arietinum L. HOM05D005766 ORTHO05D007002 9.7e-145 518.1 697 47.9
CiPaw.05G259700 Carya illinoinensis HOM05D005766 ORTHO05D007002 5.9e-142 508.8 591 52.3
Dinv28359 Davidia involucrata HOM05D005766 ORTHO05D007002 1.4e-138 497.7 570 53.2
arahy.Tifrunner.gnm1.ann1.M1FPNI Arachis hypogaea HOM05D005766 ORTHO05D007002 8.8e-138 495.0 670 46.4
TWI39G0494 Tripterygium wilfordii HOM05D005766 ORTHO05D007002 5.0e-133 479.2 682 46.8
SEGI_39054 Sequoiadendron giganteum HOM05D005766 ORTHO05D007002 5.4e-127 459.1 500 51.0
ECA238G0894 Erigeron canadensis HOM05D005766 ORTHO05D000105 1.7e-125 454.1 606 46.4
SGA_v2.0_scaffold192G40599 Striga asiatica HOM05D005766 ORTHO05D007002 3.8e-125 453.0 503 53.9
Mapoly0113s0021 Marchantia polymorpha HOM05D005766 ORTHO05D007002 8.6e-117 425.2 703 37.4
Sabra15G0021700 Salix brachista HOM05D005766 ORTHO05D007002 1.4e-114 417.9 499 51.9
RcHm_v2.0_Chr1g0379661 Rosa chinensis HOM05D005766 ORTHO05D007002 1.2e-113 414.8 498 52.6
Lalb_Chr06g0161411 Lupinus albus HOM05D005766 ORTHO05D007002 4.0e-106 389.8 497 50.3
QL11p056564 Quercus lobata HOM05D005766 ORTHO05D007002 3.0e-101 373.6 351 58.4
HPP92_022503 Vanilla planifolia HOM05D005766 ORTHO05D007002 6.6e-101 372.5 508 47.4
Sopen12g011340 Solanum pennellii HOM05D005766 ORTHO05D007002 1.9e-100 370.9 473 47.6
SMO203G0206 Selaginella moellendorffii HOM05D005766 ORTHO05D007002 3.3e-100 370.2 637 36.9
Peaxi162Scf00023g00720 Petunia axillaris HOM05D005766 ORTHO05D007002 9.5e-100 368.6 551 44.6
Sc13g0009380 Simmondsia chinensis HOM05D005766 ORTHO05D007002 1.6e-99 367.9 482 49.4
Medtr1g099380 Medicago truncatula HOM05D005766 ORTHO05D007002 2.4e-95 354.0 473 48.6
EL10Ac3g05375 Beta vulgaris HOM05D005766 ORTHO05D007002 9.2e-95 352.1 474 47.5
HanXRQChr14g0440231 Helianthus annuus HOM05D005766 ORTHO05D007002 1.1e-92 345.1 337 57.6
Atru.chr1.315 Acer truncatum HOM05D005766 ORTHO05D007002 4.7e-91 339.7 444 50.0
Oeu003335.2 Olea europaea HOM05D005766 ORTHO05D007002 4.4e-89 333.2 467 47.1
Psat6g194920 Pisum sativum HOM05D005766 ORTHO05D007002 1.4e-87 328.2 427 49.4
Nitab4.5_0000157g0190 Nicotiana tabacum HOM05D005766 ORTHO05D007002 7.1e-79 299.3 314 56.4
AagrBONN_evm.TU.Sc2ySwM_344.4899 Anthoceros agrestis HOM05D005766 ORTHO05D007002 2.1e-75 287.7 710 31.7
Atru.chr1.316 Acer truncatum HOM05D005766 ORTHO05D007002 2.8e-75 287.3 165 84.2
QL11p056568 Quercus lobata HOM05D005766 ORTHO05D007002 9.9e-73 278.9 165 79.4
RcHm_v2.0_Chr1g0379651 Rosa chinensis HOM05D005766 ORTHO05D007002 2.1e-70 271.2 202 65.8
CDE02G1402 Ceratophyllum demersum HOM05D001977 ORTHO05D002246 3.0e-69 267.3 287 53.7
unitig_37.g11976 Utricularia gibba HOM05D005766 ORTHO05D007002 2.0e-65 254.6 683 31.2
Psat6g194960 Pisum sativum HOM05D000038 ORTHO05D007763 1.2e-62 245.4 166 71.7
Sc13g0009390 Simmondsia chinensis HOM05D005766 ORTHO05D007002 1.6e-62 245.0 176 68.2
Actinidia08607 Actinidia chinensis HOM05D005766 ORTHO05D007002 7.9e-62 242.7 140 82.1
Zm00001eb221900 Zea mays HOM05D005766 ORTHO05D007002 1.1e-58 232.3 383 39.7
Lalb_Chr06g0161401 Lupinus albus HOM05D005766 ORTHO05D007002 3.8e-56 223.8 183 59.0
Nitab4.5_0001504g0110 Nicotiana tabacum HOM05D005766 ORTHO05D007002 1.4e-55 221.9 170 63.5
HanXRQChr14g0440221 Helianthus annuus HOM05D005766 ORTHO05D007002 3.2e-55 220.7 175 60.0
Medtr1g099390 Medicago truncatula HOM05D005766 ORTHO05D007002 4.2e-55 220.3 167 64.7
PGSC0003DMG400006615 Solanum tuberosum HOM05D005766 ORTHO05D007002 4.2e-55 220.3 165 62.4
Solyc12g021310.3 Solanum lycopersicum HOM05D005766 ORTHO05D007002 1.6e-54 218.4 165 61.2
Sopen12g011330 Solanum pennellii HOM05D005766 ORTHO05D007002 4.6e-54 216.9 165 60.0
AUR62021076 Chenopodium quinoa HOM05D005766 ORTHO05D007002 3.4e-49 200.7 133 75.9
AUR62031455 Chenopodium quinoa HOM05D000038 ORTHO05D007763 4.5e-49 200.3 133 75.9
QL09p011984 Quercus lobata HOM05D005766 ORTHO05D007002 8.5e-48 196.1 252 50.0
Glyma.09G181880 Glycine max HOM05D005766 ORTHO05D007002 2.5e-47 194.5 246 50.0
DCAR_008901 Daucus carota HOM05D000149 ORTHO05D000076 3.6e-46 190.7 127 72.4
QL09p011987 Quercus lobata HOM05D005766 ORTHO05D007002 2.3e-45 188.0 165 58.2
Actinidia08606 Actinidia chinensis HOM05D005766 ORTHO05D007002 2.5e-44 184.5 216 51.4
Glyma.18G131400 Glycine max HOM05D005766 ORTHO05D007002 4.3e-44 183.7 165 55.8
Nitab4.5_0014657g0010 Nicotiana tabacum HOM05D005766 ORTHO05D007002 1.7e-43 181.8 258 43.8
Os05g0299300 Oryza sativa ssp. japonica HOM05D005766 ORTHO05D007002 2.2e-43 181.4 130 63.1
CBR_g23333 Chara braunii HOM05D005766 ORTHO05D007002 8.2e-43 179.5 129 65.1
CAN.G71.5 Capsicum annuum HOM05D005766 ORTHO05D007002 4.5e-41 173.7 130 64.6
Duzib084G0599 Durio zibethinus HOM05D005766 ORTHO05D007002 2.1e-38 164.9 114 76.3
Glyma.03G072901 Glycine max HOM05D005766 ORTHO05D007002 7.9e-38 162.9 85 88.2
Nitab4.5_0000327g0060 Nicotiana tabacum HOM05D005766 ORTHO05D007002 1.4e-37 162.2 88 84.1
COL.COLO4_30253 Corchorus olitorius HOM05D005766 ORTHO05D007002 2.0e-33 148.3 206 49.0
arahy.Tifrunner.gnm1.ann1.DV56VC Arachis hypogaea HOM05D005766 ORTHO05D007002 2.5e-31 141.4 137 46.7
QL09p011981 Quercus lobata HOM05D005766 ORTHO05D007002 5.5e-31 140.2 81 80.2
CSS0010184 Camellia sinensis var. sinensis HOM05D005766 ORTHO05D007002 2.3e-29 134.8 78 80.8
Cfa000854 Carpinus fangiana HOM05D005766 ORTHO05D007002 2.2e-27 128.3 71 80.3
CSS0002634 Camellia sinensis var. sinensis HOM05D005766 ORTHO05D007002 8.2e-27 126.3 68 88.2
Actinidia08608 Actinidia chinensis HOM05D005766 ORTHO05D007002 3.8e-24 117.5 68 79.4
Cre01.g002700 Chlamydomonas reinhardtii HOM05D005766 ORTHO05D007002 1.9e-23 115.2 168 36.3
arahy.Tifrunner.gnm1.ann1.XWQU4Z Arachis hypogaea HOM05D005766 ORTHO05D007002 1.2e-20 105.9 83 60.2
TWI39G0059 Tripterygium wilfordii HOM05D005766 ORTHO05D007002 8.3e-19 99.8 68 66.2
PRCOL_00006853 Prasinoderma coloniale HOM05D005766 ORTHO05D007002 2.4e-18 98.2 633 22.4
TPR.G27363 Trifolium pratense HOM05D005766 ORTHO05D007002 8.5e-16 89.7 57 70.2
arahy.Tifrunner.gnm1.ann1.118EZC Arachis hypogaea HOM05D005766 ORTHO05D007002 2.1e-14 85.1 56 66.1
Oeu023563.1 Olea europaea HOM05D005766 ORTHO05D007002 4.1e-10 70.9 88 46.6
Glyma.08G028700 Glycine max HOM05D005766 ORTHO05D007002 4.5e-09 67.4 41 70.7
arahy.Tifrunner.gnm1.ann1.3HS4ZY Arachis hypogaea HOM05D005766 ORTHO05D007002 7.7e-09 66.6 69 55.1
Oeu044897.1 Olea europaea HOM05D005766 ORTHO05D007002 7.7e-09 66.6 88 44.3
Oeu016993.1 Olea europaea HOM05D005766 ORTHO05D007002 1.0e-08 66.2 88 44.3
arahy.Tifrunner.gnm1.ann1.AW6XP7 Arachis hypogaea HOM05D005766 ORTHO05D007002 3.8e-08 64.3 50 48.0
Oeu049881.1 Olea europaea HOM05D005766 ORTHO05D007002 3.8e-08 64.3 57 54.4
arahy.Tifrunner.gnm1.ann1.DC2VU6 Arachis hypogaea HOM05D000702 ORTHO05D007002 3.3e-07 61.2 147 35.4
CSS0035081 Camellia sinensis var. sinensis HOM05D005766 ORTHO05D007002 3.3e-07 61.2 38 76.3
Glyma.12G172150 Glycine max HOM05D005766 ORTHO05D007002 7.3e-07 60.1 84 46.4
CSS0038194 Camellia sinensis var. sinensis HOM05D005766 ORTHO05D007002 1.2e-06 59.3 38 73.7
CSS0045499 Camellia sinensis var. sinensis HOM05D005766 ORTHO05D007002 4.7e-06 57.4 38 71.1


User provided reference genes

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