Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc3.114 Carica papaya HOM05D006088 ORTHO05D007281 3.8e-290 1000.7 494 100.0
Atru.chr12.2268 Acer truncatum HOM05D006088 ORTHO05D007281 7.4e-193 677.6 515 67.0
Potri.015G009500 Populus trichocarpa HOM05D006088 ORTHO05D007281 2.8e-192 675.6 521 67.0
Atru.chr12.2276 Acer truncatum HOM05D006088 ORTHO05D007281 1.4e-191 673.3 515 66.6
Dinv29251 Davidia involucrata HOM05D006088 ORTHO05D007281 1.6e-187 659.8 525 65.1
Sabra15G0007500 Salix brachista HOM05D006088 ORTHO05D007281 6.1e-187 657.9 521 65.6
QL09p007776 Quercus lobata HOM05D006088 ORTHO05D007281 3.1e-183 645.6 525 63.8
Duzib068G0049 Durio zibethinus HOM05D006088 ORTHO05D007281 6.5e-181 637.9 510 66.1
THA.LOC104814937 Tarenaya hassleriana HOM05D006088 ORTHO05D007281 3.2e-180 635.6 509 64.4
Prupe.2G314700 Prunus persica HOM05D006088 ORTHO05D007281 2.7e-179 632.5 523 63.7
Thecc.03G202800 Theobroma cacao HOM05D006088 ORTHO05D007281 2.3e-178 629.4 510 64.5
Actinidia34240 Actinidia chinensis HOM05D006088 ORTHO05D007281 5.7e-177 624.8 520 63.1
Ca_12770_v3 Cicer arietinum L. HOM05D006088 ORTHO05D007281 4.8e-176 621.7 514 62.3
Gohir.A09G186501 Gossypium hirsutum HOM05D006088 ORTHO05D007281 6.3e-176 621.3 510 63.5
Rhsim03G0211500 Rhododendron simsii HOM05D006088 ORTHO05D007281 6.3e-176 621.3 520 62.9
Gohir.D09G180600 Gossypium hirsutum HOM05D006088 ORTHO05D007281 1.1e-175 620.5 507 63.7
RcHm_v2.0_Chr1g0381781 Rosa chinensis HOM05D006088 ORTHO05D007281 1.8e-175 619.8 521 62.6
FAN01G2391 Fragaria x ananassa HOM05D006088 ORTHO05D007281 2.4e-175 619.4 518 62.9
TWI39G0339 Tripterygium wilfordii HOM05D006088 ORTHO05D007281 7.0e-175 617.8 520 62.9
COL.COLO4_16809 Corchorus olitorius HOM05D006088 ORTHO05D007281 1.2e-174 617.1 510 64.5
CSS0044490 Camellia sinensis var. sinensis HOM05D006088 ORTHO05D007281 1.6e-174 616.7 504 64.1
FAN10G3213 Fragaria x ananassa HOM05D006088 ORTHO05D007281 2.0e-174 616.3 517 62.5
MD07G1295100 Malus domestica HOM05D006088 ORTHO05D007281 2.0e-174 616.3 519 62.2
FAN03G2371 Fragaria x ananassa HOM05D006088 ORTHO05D007281 4.5e-174 615.1 517 62.7
FAN03G2860 Fragaria x ananassa HOM05D006088 ORTHO05D007281 4.5e-174 615.1 517 62.7
FAN10G3559 Fragaria x ananassa HOM05D006088 ORTHO05D007281 4.5e-174 615.1 517 62.1
GSVIVG01038590001 Vitis vinifera HOM05D006088 ORTHO05D007281 1.0e-173 614.0 524 62.0
TPR.G24535 Trifolium pratense HOM05D006088 ORTHO05D007281 2.3e-173 612.8 514 62.1
FvH4_7g32160 Fragaria vesca HOM05D006088 ORTHO05D007281 2.9e-173 612.5 517 62.1
vmacro06404 Vaccinium macrocarpon HOM05D006088 ORTHO05D007281 3.8e-173 612.1 564 59.0
Nn1g00333 Nelumbo nucifera HOM05D006088 ORTHO05D007281 2.1e-171 606.3 518 60.6
Thhalv10004042m.g Eutrema salsugineum HOM05D006088 ORTHO05D007281 2.8e-171 605.9 509 63.7
Sp2g22980 Schrenkiella parvula HOM05D006088 ORTHO05D007281 2.8e-171 605.9 509 62.5
TAR629G2736 Trochodendron aralioides HOM05D006088 ORTHO05D007281 4.7e-171 605.1 526 60.8
FAN06G1538 Fragaria x ananassa HOM05D006088 ORTHO05D007281 6.1e-171 604.7 517 61.7
Hma1.2p1_0707F.1_g207070 Hydrangea macrophylla HOM05D006088 ORTHO05D007281 1.0e-170 604.0 507 61.7
Lj1A1022T49 Lonicera japonica HOM05D006088 ORTHO05D007281 4.0e-170 602.1 515 59.8
CANSAT21G0843 Cannabis sativa HOM05D006088 ORTHO05D007281 5.2e-170 601.7 517 59.8
Carub.0006s2216 Capsella rubella HOM05D006088 ORTHO05D007281 1.5e-169 600.1 509 61.5
PGR042G2967 Punica granatum HOM05D006088 ORTHO05D007281 1.5e-169 600.1 519 61.3
BraA02t09012Z Brassica rapa HOM05D006088 ORTHO05D007281 1.7e-168 596.7 511 61.8
A02p40650 Brassica napus HOM05D006088 ORTHO05D007281 2.8e-168 595.9 510 62.2
AT5G24340 Arabidopsis thaliana HOM05D006088 ORTHO05D007281 6.3e-168 594.7 509 62.1
BcaC03g17984 Brassica carinata HOM05D006088 ORTHO05D007281 8.3e-168 594.3 509 61.9
CSS0005298 Camellia sinensis var. sinensis HOM05D006088 ORTHO05D007281 1.1e-167 594.0 488 64.3
BolC2t12093H Brassica oleracea HOM05D006088 ORTHO05D007281 2.4e-167 592.8 509 61.7
BcaB07g29905 Brassica carinata HOM05D006088 ORTHO05D007281 4.1e-167 592.0 510 62.2
PGSC0003DMG400018542 Solanum tuberosum HOM05D006088 ORTHO05D007281 1.2e-166 590.5 511 61.3
BcaC03g17985 Brassica carinata HOM05D006088 ORTHO05D007281 2.7e-166 589.3 509 61.9
Eucgr.A01442 Eucalyptus grandis HOM05D006088 ORTHO05D007281 2.7e-166 589.3 519 59.9
Gorai.006G202600 Gossypium raimondii HOM05D006088 ORTHO05D007281 5.9e-166 588.2 490 62.7
Lj5g0026434 Lotus japonicus HOM05D006088 ORTHO05D007281 2.3e-165 586.3 525 60.0
Aa31LG11G3620 Aethionema arabicum HOM05D006088 ORTHO05D007281 3.8e-165 585.5 512 62.1
CsaV3_3G019690 Cucumis sativus L. HOM05D006088 ORTHO05D007281 3.3e-164 582.4 523 59.1
CARHR189110 Cardamine hirsuta HOM05D006088 ORTHO05D007281 4.3e-164 582.0 516 60.7
Sopen03g022590 Solanum pennellii HOM05D006088 ORTHO05D007281 4.3e-164 582.0 513 60.2
Glyma.13G078800 Glycine max HOM05D006088 ORTHO05D007281 1.2e-163 580.5 511 60.7
Psat6g035960 Pisum sativum HOM05D006088 ORTHO05D007281 3.6e-163 578.9 497 61.6
Cc02_g01220 Coffea canephora HOM05D006088 ORTHO05D007281 4.0e-162 575.5 491 62.3
MELO3C019378.2 Cucumis melo HOM05D006088 ORTHO05D007281 4.0e-162 575.5 511 58.7
PSO063G3091 Papaver somniferum HOM05D006088 ORTHO05D007281 5.2e-162 575.1 520 57.9
arahy.Tifrunner.gnm1.ann1.F1TPPK Arachis hypogaea HOM05D006088 ORTHO05D007281 4.4e-161 572.0 532 57.0
Lalb_Chr04g0253281 Lupinus albus HOM05D006088 ORTHO05D007281 5.8e-161 571.6 516 59.3
Phvul.001G074500 Phaseolus vulgaris HOM05D006088 ORTHO05D007281 4.9e-160 568.5 501 59.7
arahy.Tifrunner.gnm1.ann1.W8KES2 Arachis hypogaea HOM05D006088 ORTHO05D007281 1.1e-159 567.4 518 58.1
Oeu037044.1 Olea europaea HOM05D006088 ORTHO05D007281 3.2e-159 565.8 513 59.5
Sed0011789 Sechium edule HOM05D006088 ORTHO05D007281 3.2e-159 565.8 525 59.0
MSTRG.27009 Avicennia marina HOM05D006088 ORTHO05D007281 4.6e-158 562.0 512 59.2
SGA_v2.0_scaffold44G16827 Striga asiatica HOM05D006088 ORTHO05D007281 7.8e-158 561.2 509 59.3
C02p60380 Brassica napus HOM05D006088 ORTHO05D007281 2.3e-157 559.7 492 60.8
DCAR_014551 Daucus carota HOM05D006088 ORTHO05D007281 8.6e-157 557.8 509 57.4
EL10Ac3g05241 Beta vulgaris HOM05D006088 ORTHO05D007281 2.5e-156 556.2 531 55.4
CAN.G481.44 Capsicum annuum HOM05D006088 ORTHO05D007281 4.3e-156 555.4 533 56.8
Solyc03g082850.3 Solanum lycopersicum HOM05D006088 ORTHO05D007281 4.0e-154 548.9 504 58.5
Sc25g0000960 Simmondsia chinensis HOM05D006088 ORTHO05D007281 8.9e-154 547.7 518 56.8
Peaxi162Scf00740g00327 Petunia axillaris HOM05D006088 ORTHO05D007281 2.6e-153 546.2 502 57.8
HanXRQChr04g0100451 Helianthus annuus HOM05D006088 ORTHO05D007281 9.8e-153 544.3 509 56.6
vmacro06403 Vaccinium macrocarpon HOM05D006088 ORTHO05D007281 2.4e-151 539.7 493 59.0
AUR62006059 Chenopodium quinoa HOM05D006088 ORTHO05D007281 1.5e-148 530.4 525 55.8
Migut.F00188 Erythranthe guttata HOM05D006088 ORTHO05D007281 2.5e-148 529.6 497 57.9
BcaC03g17987 Brassica carinata HOM05D006088 ORTHO05D007281 1.8e-146 523.5 518 56.2
Hund21022 Selenicereus undatus HOM05D006088 ORTHO05D007281 3.1e-146 522.7 550 52.2
Aqoxy5G04265 Aquilegia oxysepala HOM05D006088 ORTHO05D007281 5.2e-146 521.9 529 52.6
MBI12_g21748_MAGBIO Magnolia biondii HOM05D006088 ORTHO05D007281 1.5e-145 520.4 509 54.2
AUR62035569 Chenopodium quinoa HOM05D006088 ORTHO05D007281 7.1e-143 511.5 506 55.3
Nitab4.5_0005326g0020 Nicotiana tabacum HOM05D006088 ORTHO05D007281 8.6e-141 504.6 520 53.3
Manes.01G039200 Manihot esculenta HOM05D006088 ORTHO05D007281 3.6e-139 499.2 437 61.8
Nitab4.5_0002780g0060 Nicotiana tabacum HOM05D006088 ORTHO05D007281 2.4e-138 496.5 496 54.4
ECA238G4490 Erigeron canadensis HOM05D006088 ORTHO05D007281 3.4e-137 492.7 520 52.1
HPP92_025612 Vanilla planifolia HOM05D006088 ORTHO05D007281 2.4e-135 486.5 531 48.4
Ciclev10020182m.g Citrus clementina HOM05D006088 ORTHO05D007281 1.2e-134 484.2 442 59.3
CiPaw.06G044500 Carya illinoinensis HOM05D006088 ORTHO05D007281 7.8e-134 481.5 440 58.2
unitig_52.g17713 Utricularia gibba HOM05D006088 ORTHO05D007281 1.1e-132 477.6 484 54.5
Lsat_1_v5_gn_2_135240 Lactuca sativa HOM05D006088 ORTHO05D007281 7.8e-126 454.9 515 50.3
Os07g0452400 Oryza sativa ssp. japonica HOM05D006088 ORTHO05D007281 2.1e-123 446.8 535 47.9
Glyma.14G150400 Glycine max HOM05D006088 ORTHO05D007281 4.0e-122 442.6 325 67.7
ATR0757G203 Amborella trichopoda HOM05D006088 ORTHO05D007281 1.4e-119 434.1 521 47.4
Zm00001eb096690 Zea mays HOM05D006088 ORTHO05D007281 4.0e-114 416.0 391 56.3
Hma1.2p1_0707F.1_g207060 Hydrangea macrophylla HOM05D006088 ORTHO05D007281 3.5e-110 402.9 394 54.3
AL6G35860 Arabidopsis lyrata HOM05D006088 ORTHO05D007281 3.3e-108 396.4 399 54.1
Ca_12778_v3 Cicer arietinum L. HOM05D006088 ORTHO05D007281 2.0e-105 387.1 384 54.4
CDE02G1851 Ceratophyllum demersum HOM05D006088 ORTHO05D007281 5.8e-105 385.6 520 44.0
SalBow4G2097 Salvia bowleyana HOM05D006088 ORTHO05D007281 9.7e-100 368.2 232 76.7
Haze_00251 Corylus avellana HOM05D006088 ORTHO05D007281 1.9e-79 300.8 448 43.8
arahy.Tifrunner.gnm1.ann1.IYG6N7 Arachis hypogaea HOM05D006088 ORTHO05D007281 6.1e-78 295.8 277 59.2
Haze_00245 Corylus avellana HOM05D006088 ORTHO05D007281 6.1e-78 295.8 448 43.3
A02p40390 Brassica napus HOM05D006088 ORTHO05D007281 3.1e-74 283.5 235 63.8
SMO266G0077 Selaginella moellendorffii HOM05D006088 ORTHO05D007281 2.0e-73 280.8 493 37.1
Mapoly0133s0016 Marchantia polymorpha HOM05D006088 ORTHO05D007281 3.5e-73 280.0 410 41.2
AagrBONN_evm.TU.Sc2ySwM_117.2926 Anthoceros agrestis HOM05D006088 ORTHO05D007281 4.5e-73 279.6 400 39.2
DCAR_010586 Daucus carota HOM05D006088 ORTHO05D007281 8.5e-72 275.4 236 58.5
Pp3c11_25950 Physcomitrium patens HOM05D006088 ORTHO05D007281 1.6e-65 254.6 411 37.5
arahy.Tifrunner.gnm1.ann1.GS5K3D Arachis hypogaea HOM05D006088 ORTHO05D007281 7.7e-57 225.7 272 48.9
CBR_g51519 Chara braunii HOM05D000019 ORTHO05D000353 2.3e-48 197.6 507 31.0
VMungo0647G0665 Vigna mungo HOM05D006088 ORTHO05D007281 1.0e-40 172.2 86 88.4
A02p40610 Brassica napus HOM05D006088 ORTHO05D007281 2.4e-34 151.0 159 56.6
PSO675G7769 Papaver somniferum HOM05D006088 ORTHO05D007281 9.2e-34 149.1 392 30.4
A02p40510 Brassica napus HOM05D006088 ORTHO05D007281 3.5e-33 147.1 159 56.0
PSO732G0342 Papaver somniferum HOM05D006088 ORTHO05D007281 5.1e-32 143.3 235 37.0
Dinv35357 Davidia involucrata HOM05D006088 ORTHO05D007281 9.5e-23 112.5 62 80.6
Cc11_g07360 Coffea canephora HOM05D006088 ORTHO05D007281 4.7e-22 110.2 156 41.7
Cfa016204 Carpinus fangiana HOM05D006088 ORTHO05D007281 6.8e-21 106.3 74 68.9
BraA02t09007Z Brassica rapa HOM05D006088 ORTHO05D007281 1.7e-19 101.7 112 50.9
CDE11G0933 Ceratophyllum demersum HOM05D006088 ORTHO05D007281 1.1e-18 99.0 91 58.2
TWI14G0770 Tripterygium wilfordii HOM05D006088 ORTHO05D007281 1.2e-12 79.0 73 60.3
A02p40350 Brassica napus HOM05D006088 ORTHO05D007281 1.5e-12 78.6 60 75.0
Lsat_1_v5_gn_7_72820 Lactuca sativa HOM05D006088 ORTHO05D007281 2.9e-11 74.3 92 45.7
Cc00_g34690 Coffea canephora HOM05D006088 ORTHO05D007281 1.4e-10 72.0 122 37.7
Cre02.g083900 Chlamydomonas reinhardtii HOM05D005361 ORTHO05D006518 7.1e-10 69.7 157 31.2
PRCOL_00002312 Prasinoderma coloniale HOM05D005361 ORTHO05D006518 9.3e-10 69.3 188 28.2
A02p40600 Brassica napus HOM05D006088 ORTHO05D007281 2.1e-09 68.2 32 81.2
Cpa.g.sc48.138 Carica papaya HOM05D005361 ORTHO05D006518 2.3e-08 64.7 174 27.0
PRCOL_00006842 Prasinoderma coloniale HOM05D005361 ORTHO05D006518 2.3e-08 64.7 183 27.3
FAN08G1915 Fragaria x ananassa HOM05D005361 ORTHO05D006518 3.0e-08 64.3 187 28.3
Zm00001eb347420 Zea mays HOM05D005361 ORTHO05D006518 3.0e-08 64.3 216 25.5
Gohir.A13G111600 Gossypium hirsutum HOM05D005361 ORTHO05D006518 3.9e-08 63.9 155 31.6
MD12G1208000 Malus domestica HOM05D005361 ORTHO05D006518 3.9e-08 63.9 191 26.2
DCAR_005413 Daucus carota HOM05D005361 ORTHO05D006518 5.1e-08 63.5 175 25.7
Prupe.6G315500 Prunus persica HOM05D005361 ORTHO05D006518 5.1e-08 63.5 188 26.1
FAN05G4787 Fragaria x ananassa HOM05D005361 ORTHO05D006518 8.7e-08 62.8 160 28.8
FvH4_6g07170 Fragaria vesca HOM05D005361 ORTHO05D006518 1.5e-07 62.0 157 29.3
FAN14G4398 Fragaria x ananassa HOM05D005361 ORTHO05D006518 1.5e-07 62.0 157 29.3
Carub.0002s0785 Capsella rubella HOM05D005361 ORTHO05D006518 1.9e-07 61.6 215 24.7
RcHm_v2.0_Chr3g0456811 Rosa chinensis HOM05D005361 ORTHO05D006518 1.9e-07 61.6 165 29.1
HanXRQChr10g0299251 Helianthus annuus HOM05D005361 ORTHO05D006518 2.5e-07 61.2 210 24.8
MBI18_g24951_MAGBIO Magnolia biondii HOM05D005361 ORTHO05D006518 2.5e-07 61.2 192 23.4
MD04G1195700 Malus domestica HOM05D005361 ORTHO05D006518 2.5e-07 61.2 159 26.4
Lj9A208G25 Lonicera japonica HOM05D005361 ORTHO05D006518 3.3e-07 60.8 182 23.1
CARHR289850 Cardamine hirsuta HOM05D005361 ORTHO05D006518 4.3e-07 60.5 210 25.7
CiPaw.07G027300 Carya illinoinensis HOM05D005361 ORTHO05D006518 4.3e-07 60.5 159 25.2
Aqoxy6G02436 Aquilegia oxysepala HOM05D005361 ORTHO05D006518 5.6e-07 60.1 191 24.6
Ciclev10000759m.g Citrus clementina HOM05D005361 ORTHO05D006518 5.6e-07 60.1 157 28.7
FvH4_5g34880 Fragaria vesca HOM05D005361 ORTHO05D006518 5.6e-07 60.1 187 27.8
Lsat_1_v5_gn_5_102760 Lactuca sativa HOM05D005361 ORTHO05D006518 5.6e-07 60.1 155 29.0
MELO3C015263.2 Cucumis melo HOM05D005361 ORTHO05D006518 7.3e-07 59.7 163 27.0
Sed0027360 Sechium edule HOM05D005361 ORTHO05D006518 7.3e-07 59.7 153 27.5
FAN04G2120 Fragaria x ananassa HOM05D005361 ORTHO05D006518 9.6e-07 59.3 189 27.5
Sp2g06550 Schrenkiella parvula HOM05D005361 ORTHO05D006518 9.6e-07 59.3 211 24.2
Ca_10160_v3 Cicer arietinum L. HOM05D005361 ORTHO05D006518 1.6e-06 58.5 162 25.9
SGA_v2.0_scaffold80G25882 Striga asiatica HOM05D005361 ORTHO05D006518 1.6e-06 58.5 156 26.9
CiPaw.08G157000 Carya illinoinensis HOM05D005361 ORTHO05D006518 2.1e-06 58.2 158 25.3
ECA234G3067 Erigeron canadensis HOM05D005361 ORTHO05D006518 2.8e-06 57.8 217 23.5
Atru.chr2.142 Acer truncatum HOM05D005361 ORTHO05D006518 3.6e-06 57.4 159 28.3
Oeu053699.1 Olea europaea HOM05D005361 ORTHO05D006518 3.6e-06 57.4 181 24.3
PRCOL_00005854 Prasinoderma coloniale HOM05D005361 ORTHO05D007281 3.6e-06 57.4 70 40.0
Rhsim11G0093500 Rhododendron simsii HOM05D005361 ORTHO05D006518 4.8e-06 57.0 161 24.8
RcHm_v2.0_Chr7g0235801 Rosa chinensis HOM05D005361 ORTHO05D006518 6.2e-06 56.6 157 28.7
HanXRQChr01g0020021 Helianthus annuus HOM05D001036 ORTHO05D001852 8.1e-06 56.2 57 42.1
MCO02G089 Micromonas commoda HOM05D005361 ORTHO05D006518 8.1e-06 56.2 45 55.6


User provided reference genes

Program Settings