Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc2939.1 Carica papaya HOM05D000190 ORTHO05D000113 1.2e-74 283.1 147 100.0
Prupe.1G574000 Prunus persica HOM05D000190 ORTHO05D000113 6.5e-44 181.0 145 68.3
Duzib052G0323 Durio zibethinus HOM05D000190 ORTHO05D000113 8.0e-42 174.1 146 66.4
Thecc.02G089800 Theobroma cacao HOM05D000190 ORTHO05D000113 3.0e-41 172.2 146 67.8
COL.COLO4_11762 Corchorus olitorius HOM05D000190 ORTHO05D000113 3.9e-41 171.8 147 67.3
Ciclev10003889m.g Citrus clementina HOM05D000190 ORTHO05D000113 5.2e-41 171.4 146 73.3
FAN18G3244 Fragaria x ananassa HOM05D000190 ORTHO05D000113 2.8e-39 165.6 145 64.8
FAN08G1394 Fragaria x ananassa HOM05D000190 ORTHO05D000113 3.7e-39 165.2 145 64.1
FvH4_5g28810 Fragaria vesca HOM05D000190 ORTHO05D000113 8.2e-39 164.1 145 64.1
FAN04G2027 Fragaria x ananassa HOM05D000190 ORTHO05D000113 1.4e-38 163.3 145 64.1
FAN13G1232 Fragaria x ananassa HOM05D000190 ORTHO05D000113 1.4e-38 163.3 145 64.1
RcHm_v2.0_Chr7g0221021 Rosa chinensis HOM05D000190 ORTHO05D000113 2.6e-37 159.1 145 62.8
QL02p099495 Quercus lobata HOM05D000190 ORTHO05D000113 5.9e-37 157.9 146 62.3
CiPaw.05G050200 Carya illinoinensis HOM05D000190 ORTHO05D000113 2.2e-36 156.0 148 64.2
Atru.chr6.677 Acer truncatum HOM05D000190 ORTHO05D000113 8.5e-36 154.1 148 62.2
Gorai.005G241700 Gossypium raimondii HOM05D000190 ORTHO05D000113 8.5e-36 154.1 147 64.6
Gohir.A03G192800 Gossypium hirsutum HOM05D000190 ORTHO05D000113 3.2e-35 152.1 146 64.4
Eucgr.I02745 Eucalyptus grandis HOM05D000190 ORTHO05D000113 4.2e-35 151.8 146 63.0
MELO3C019435.2 Cucumis melo HOM05D000190 ORTHO05D000113 1.0e-33 147.1 145 56.6
Sed0012752 Sechium edule HOM05D000190 ORTHO05D000113 1.0e-33 147.1 145 57.9
THA.LOC104809616 Tarenaya hassleriana HOM05D000190 ORTHO05D000113 1.8e-33 146.4 157 59.2
CANSAT11G1779 Cannabis sativa HOM05D000190 ORTHO05D000113 2.3e-33 146.0 151 58.9
VMungo0540G1527 Vigna mungo HOM05D000190 ORTHO05D000113 2.3e-33 146.0 145 61.4
CsaV3_3G019230 Cucumis sativus L. HOM05D000190 ORTHO05D000113 3.0e-33 145.6 148 57.4
Dinv24308 Davidia involucrata HOM05D000190 ORTHO05D000113 3.0e-33 145.6 148 62.8
Glyma.08G188600 Glycine max HOM05D000190 ORTHO05D000113 4.0e-33 145.2 146 61.0
MD08G1236900 Malus domestica HOM05D000190 ORTHO05D000113 4.0e-33 145.2 145 57.2
arahy.Tifrunner.gnm1.ann1.GMF3XI Arachis hypogaea HOM05D000190 ORTHO05D000113 5.7e-32 141.4 147 57.1
PGR142G0399 Punica granatum HOM05D000190 ORTHO05D000113 1.3e-31 140.2 151 57.6
A09p64800 Brassica napus HOM05D000190 ORTHO05D000113 1.7e-31 139.8 162 56.2
BolC8t52378H Brassica oleracea HOM05D000190 ORTHO05D000113 1.7e-31 139.8 162 56.2
BraA09t41815Z Brassica rapa HOM05D000190 ORTHO05D000113 1.7e-31 139.8 162 56.2
Thhalv10007202m.g Eutrema salsugineum HOM05D000190 ORTHO05D000113 8.2e-31 137.5 161 54.7
arahy.Tifrunner.gnm1.ann1.SY37LP Arachis hypogaea HOM05D000190 ORTHO05D000113 1.1e-30 137.1 147 56.5
C08p48390 Brassica napus HOM05D000190 ORTHO05D000113 1.4e-30 136.7 164 54.3
TWI59G1448 Tripterygium wilfordii HOM05D000190 ORTHO05D000113 1.8e-30 136.3 147 59.2
Sp1g09700 Schrenkiella parvula HOM05D000190 ORTHO05D000113 4.1e-30 135.2 160 54.4
TAR628G0556 Trochodendron aralioides HOM05D000190 ORTHO05D000113 5.3e-30 134.8 148 58.1
ClCG05G009500 Citrullus lanatus HOM05D000190 ORTHO05D000113 7.0e-30 134.4 145 53.8
Haze_01744 Corylus avellana HOM05D000190 ORTHO05D000113 1.2e-29 133.7 146 58.2
Carub.0001s1058 Capsella rubella HOM05D000190 ORTHO05D000113 7.7e-29 131.0 159 54.1
Ca_00057_v3 Cicer arietinum L. HOM05D000190 ORTHO05D000113 1.7e-28 129.8 147 55.1
Potri.004G218500 Populus trichocarpa HOM05D000190 ORTHO05D000113 2.2e-28 129.4 150 53.3
Phvul.006G216900 Phaseolus vulgaris HOM05D000190 ORTHO05D000113 2.9e-28 129.0 81 82.7
Glyma.12G169332 Glycine max HOM05D000190 ORTHO05D000113 3.8e-28 128.6 77 87.0
Rhsim11G0127200 Rhododendron simsii HOM05D000190 ORTHO05D000113 8.5e-28 127.5 146 51.4
AT1G11000 Arabidopsis thaliana HOM05D000190 ORTHO05D000113 1.9e-27 126.3 162 52.5
CARHR011210 Cardamine hirsuta HOM05D000190 ORTHO05D000113 5.5e-27 124.8 162 53.1
Aa31LG1G3890 Aethionema arabicum HOM05D000190 ORTHO05D000113 9.4e-27 124.0 150 56.0
Manes.07G020200 Manihot esculenta HOM05D000190 ORTHO05D000113 4.7e-26 121.7 127 59.8
Medtr2g006280 Medicago truncatula HOM05D000190 ORTHO05D000113 4.7e-26 121.7 148 51.4
CSS0001730 Camellia sinensis var. sinensis HOM05D000190 ORTHO05D000113 8.0e-26 120.9 146 52.7
TPR.G2093 Trifolium pratense HOM05D000190 ORTHO05D000113 2.3e-25 119.4 149 53.7
GSVIVG01023344001 Vitis vinifera HOM05D000190 ORTHO05D000113 2.3e-25 119.4 98 70.4
Sabra01G0165700 Salix brachista HOM05D000190 ORTHO05D000113 3.0e-25 119.0 122 59.0
Lj5C255T7 Lonicera japonica HOM05D000190 ORTHO05D000113 4.0e-25 118.6 150 50.0
Cc02_g22820 Coffea canephora HOM05D000190 ORTHO05D000113 5.2e-25 118.2 147 51.7
vmacro01740 Vaccinium macrocarpon HOM05D000190 ORTHO05D000113 6.8e-25 117.9 148 50.7
Psat3g090000 Pisum sativum HOM05D000190 ORTHO05D000113 8.8e-25 117.5 84 75.0
Nn5g27533 Nelumbo nucifera HOM05D000190 ORTHO05D000113 5.7e-24 114.8 152 50.7
HanXRQChr03g0065251 Helianthus annuus HOM05D000190 ORTHO05D000113 7.5e-24 114.4 145 53.8
Lsat_1_v5_gn_9_120900 Lactuca sativa HOM05D000190 ORTHO05D000113 2.2e-23 112.8 110 61.8
CAN.G1.40 Capsicum annuum HOM05D000190 ORTHO05D000113 3.7e-23 112.1 148 48.6
PGSC0003DMG400018975 Solanum tuberosum HOM05D000190 ORTHO05D000113 6.3e-23 111.3 155 47.7
Hma1.2p1_1108F.1_g257780 Hydrangea macrophylla HOM05D000190 ORTHO05D000113 8.3e-23 110.9 147 48.3
PSO782G0842 Papaver somniferum HOM05D000190 ORTHO05D000113 1.1e-22 110.5 152 51.3
Lalb_Chr18g0060981 Lupinus albus HOM05D000190 ORTHO05D000113 1.4e-22 110.2 81 75.3
Aqoxy6G00059 Aquilegia oxysepala HOM05D000190 ORTHO05D000113 3.1e-22 109.0 147 53.1
ECA240G2055 Erigeron canadensis HOM05D000190 ORTHO05D000113 5.4e-22 108.2 146 50.0
DCAR_029261 Daucus carota HOM05D000190 ORTHO05D000113 1.6e-21 106.7 149 47.7
PSO170G4559 Papaver somniferum HOM05D000190 ORTHO05D000113 1.6e-21 106.7 152 50.0
Solyc10g044510.2 Solanum lycopersicum HOM05D000190 ORTHO05D000113 2.7e-21 105.9 148 48.0
Sopen10g013100 Solanum pennellii HOM05D000190 ORTHO05D000113 5.9e-21 104.8 149 48.3
DCAR_006691 Daucus carota HOM05D000190 ORTHO05D000113 1.3e-20 103.6 107 60.7
Hund12948 Selenicereus undatus HOM05D000190 ORTHO05D000113 2.3e-20 102.8 147 49.0
Oeu034118.1 Olea europaea HOM05D000190 ORTHO05D000113 2.9e-20 102.4 147 51.0
AUR62014234 Chenopodium quinoa HOM05D000190 ORTHO05D000113 1.5e-19 100.1 146 47.9
AUR62038460 Chenopodium quinoa HOM05D000190 ORTHO05D000113 1.5e-19 100.1 146 48.6
Nitab4.5_0004129g0050 Nicotiana tabacum HOM05D000190 ORTHO05D000113 4.2e-19 98.6 154 44.2
EL10Ac6g14055 Beta vulgaris HOM05D000190 ORTHO05D000113 7.2e-19 97.8 146 47.3
Peaxi162Scf00003g03951 Petunia axillaris HOM05D000190 ORTHO05D000113 1.0e-17 94.0 149 47.0
Sc23g0004990 Simmondsia chinensis HOM05D000190 ORTHO05D000113 3.0e-17 92.4 111 51.4
MBI17_g01787_MAGBIO Magnolia biondii HOM05D000190 ORTHO05D000113 6.8e-17 91.3 69 76.8
SGA_v2.0_scaffold42G15926 Striga asiatica HOM05D000190 ORTHO05D000113 1.2e-16 90.5 150 47.3
Nitab4.5_0000667g0170 Nicotiana tabacum HOM05D000190 ORTHO05D000113 1.5e-16 90.1 152 46.1
Gohir.D02G213800 Gossypium hirsutum HOM05D000190 ORTHO05D000113 2.0e-16 89.7 58 82.8
Migut.N01052 Erythranthe guttata HOM05D000190 ORTHO05D000113 4.4e-16 88.6 148 45.9
SalBow3G0183 Salvia bowleyana HOM05D000190 ORTHO05D000113 7.5e-16 87.8 113 50.4
ATR1134G133 Amborella trichopoda HOM05D000190 ORTHO05D000113 1.8e-14 83.2 140 47.9
Os11g0181400 Oryza sativa ssp. japonica HOM05D000190 ORTHO05D000113 3.8e-12 75.5 81 53.1
Zm00001eb201210 Zea mays HOM05D000190 ORTHO05D000113 6.6e-12 74.7 91 52.7
Actinidia39021 Actinidia chinensis HOM05D000190 ORTHO05D000113 8.9e-09 64.3 105 46.7
ATR0579G158 Amborella trichopoda HOM05D000190 ORTHO05D000113 1.7e-07 60.1 57 59.6
MBI12_g10428_MAGBIO Magnolia biondii HOM05D000190 ORTHO05D000113 2.2e-07 59.7 66 57.6
TAR628G0052 Trochodendron aralioides HOM05D000190 ORTHO05D000113 3.2e-06 55.8 132 35.6
SEGI_29250 Sequoiadendron giganteum HOM05D000190 ORTHO05D000113 9.2e-06 54.3 131 35.1


User provided reference genes

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