Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc292.9 Carica papaya HOM05D003561 ORTHO05D004351 0.0e+00 1128.6 553 100.0
Atru.chr5.2428 Acer truncatum HOM05D003561 ORTHO05D004351 7.7e-215 750.7 552 68.8
Cfa004615 Carpinus fangiana HOM05D003561 ORTHO05D004351 1.1e-213 746.9 555 67.0
QL11p032306 Quercus lobata HOM05D003561 ORTHO05D004351 3.3e-213 745.3 554 69.1
Haze_10212 Corylus avellana HOM05D003561 ORTHO05D004351 1.2e-212 743.4 563 67.1
CiPaw.05G014100 Carya illinoinensis HOM05D003561 ORTHO05D004351 1.6e-212 743.0 555 67.6
Prupe.8G138700 Prunus persica HOM05D003561 ORTHO05D004351 4.0e-211 738.4 555 67.6
Duzib132G1062 Durio zibethinus HOM05D003561 ORTHO05D004351 3.4e-210 735.3 551 67.5
Thecc.02G112400 Theobroma cacao HOM05D003561 ORTHO05D004351 9.8e-210 733.8 551 67.2
Potri.009G092500 Populus trichocarpa HOM05D003561 ORTHO05D004351 4.9e-209 731.5 553 66.5
Manes.10G073266 Manihot esculenta HOM05D003561 ORTHO05D004351 1.4e-203 713.4 556 64.2
MD05G1093800 Malus domestica HOM05D003561 ORTHO05D004351 2.6e-202 709.1 554 64.8
Ciclev10027851m.g Citrus clementina HOM05D003561 ORTHO05D004351 1.3e-201 706.8 549 65.8
RcHm_v2.0_Chr6g0254331 Rosa chinensis HOM05D003561 ORTHO05D004351 1.4e-200 703.4 551 65.2
COL.COLO4_32560 Corchorus olitorius HOM05D003561 ORTHO05D004351 2.4e-200 702.6 550 65.1
Sabra09G0071200 Salix brachista HOM05D003561 ORTHO05D004351 4.1e-200 701.8 554 64.1
FAN15G0682 Fragaria x ananassa HOM05D003561 ORTHO05D004351 1.6e-199 699.9 551 64.6
FAN24G1860 Fragaria x ananassa HOM05D003561 ORTHO05D004351 6.0e-199 698.0 551 64.2
FAN27G2112 Fragaria x ananassa HOM05D003561 ORTHO05D004351 9.5e-197 690.6 551 63.3
Potri.001G297600 Populus trichocarpa HOM05D003561 ORTHO05D004351 1.1e-195 687.2 549 63.0
FvH4_2g04670 Fragaria vesca HOM05D003561 ORTHO05D004351 3.4e-194 682.2 551 63.0
Gorai.005G233700 Gossypium raimondii HOM05D003561 ORTHO05D004351 3.4e-194 682.2 551 63.2
Lj5g0023418 Lotus japonicus HOM05D003561 ORTHO05D004351 3.4e-194 682.2 553 63.3
TAR381G0090 Trochodendron aralioides HOM05D003561 ORTHO05D004351 3.4e-194 682.2 552 63.2
Gohir.A03G184800 Gossypium hirsutum HOM05D003561 ORTHO05D004351 2.9e-193 679.1 556 62.4
Gohir.D02G206300 Gossypium hirsutum HOM05D003561 ORTHO05D004351 8.3e-193 677.6 551 62.8
GSVIVG01037885001 Vitis vinifera HOM05D003561 ORTHO05D004351 1.9e-192 676.4 552 63.4
Phvul.007G042500 Phaseolus vulgaris HOM05D003561 ORTHO05D004351 1.2e-191 673.7 559 62.3
Dinv15779 Davidia involucrata HOM05D003561 ORTHO05D004351 2.7e-191 672.5 553 64.0
Lalb_Chr02g0145171 Lupinus albus HOM05D003561 ORTHO05D004351 2.8e-188 662.5 554 61.4
arahy.Tifrunner.gnm1.ann1.Q24X8K Arachis hypogaea HOM05D003561 ORTHO05D004351 1.1e-187 660.6 548 61.3
CSS0023905 Camellia sinensis var. sinensis HOM05D003561 ORTHO05D004351 1.1e-187 660.6 550 62.0
Psat6g216560 Pisum sativum HOM05D003561 ORTHO05D004351 1.1e-187 660.6 557 61.2
Glyma.20G131200 Glycine max HOM05D003561 ORTHO05D004351 3.1e-187 659.1 553 62.0
VMungo0720G2973 Vigna mungo HOM05D003561 ORTHO05D004351 1.2e-186 657.1 560 60.2
Actinidia27978 Actinidia chinensis HOM05D003561 ORTHO05D004351 7.6e-186 654.4 558 60.9
arahy.Tifrunner.gnm1.ann1.IMHW03 Arachis hypogaea HOM05D003561 ORTHO05D004351 7.6e-186 654.4 548 60.8
Medtr1g106905 Medicago truncatula HOM05D003561 ORTHO05D004351 2.9e-185 652.5 554 61.4
CSS0037584 Camellia sinensis var. sinensis HOM05D003561 ORTHO05D004351 8.3e-185 651.0 559 60.8
Eucgr.G01293 Eucalyptus grandis HOM05D003561 ORTHO05D004351 1.6e-183 646.7 550 61.6
Nn5g30480 Nelumbo nucifera HOM05D003561 ORTHO05D004351 1.7e-182 643.3 560 59.3
Oeu011151.1 Olea europaea HOM05D003561 ORTHO05D004351 2.3e-182 642.9 558 59.9
Ca_11052_v3 Cicer arietinum L. HOM05D003561 ORTHO05D004351 3.0e-182 642.5 556 59.5
vmacro19460 Vaccinium macrocarpon HOM05D003561 ORTHO05D004351 1.5e-181 640.2 550 60.2
TPR.G27110 Trifolium pratense HOM05D003561 ORTHO05D004351 3.3e-181 639.0 565 59.6
PGR042G0884 Punica granatum HOM05D003561 ORTHO05D004351 1.2e-180 637.1 555 60.2
Lj5A216G104 Lonicera japonica HOM05D003561 ORTHO05D004351 2.1e-180 636.3 552 60.9
PGSC0003DMG400025758 Solanum tuberosum HOM05D003561 ORTHO05D004351 2.8e-180 636.0 553 60.2
Sopen01g049600 Solanum pennellii HOM05D003561 ORTHO05D004351 6.2e-180 634.8 553 59.9
Rhsim10G0161700 Rhododendron simsii HOM05D003561 ORTHO05D004351 1.4e-179 633.6 549 60.3
Glyma.10G259600 Glycine max HOM05D003561 ORTHO05D004351 4.0e-179 632.1 525 62.1
Rhsim05G0089400 Rhododendron simsii HOM05D003561 ORTHO05D004351 5.2e-179 631.7 555 60.2
Solyc01g107360.4 Solanum lycopersicum HOM05D003561 ORTHO05D004351 8.9e-179 630.9 553 59.7
Peaxi162Scf00016g02531 Petunia axillaris HOM05D003561 ORTHO05D004351 2.0e-178 629.8 555 59.3
MSTRG.16699 Avicennia marina HOM05D003561 ORTHO05D004351 5.8e-178 628.2 557 58.5
Nitab4.5_0001480g0050 Nicotiana tabacum HOM05D003561 ORTHO05D004351 4.2e-176 622.1 552 59.2
Nitab4.5_0010275g0030 Nicotiana tabacum HOM05D003561 ORTHO05D004351 9.3e-176 620.9 552 59.1
TWI75G1561 Tripterygium wilfordii HOM05D003561 ORTHO05D004351 1.6e-175 620.2 554 58.7
SalBow6G5634 Salvia bowleyana HOM05D003561 ORTHO05D004351 1.3e-174 617.1 553 59.0
DCAR_001664 Daucus carota HOM05D003561 ORTHO05D004351 3.0e-174 615.9 562 59.1
Migut.B00411 Erythranthe guttata HOM05D003561 ORTHO05D004351 6.6e-174 614.8 554 58.7
FAN20G0240 Fragaria x ananassa HOM05D003561 ORTHO05D004351 7.3e-173 611.3 521 61.0
Cc02_g19520 Coffea canephora HOM05D003561 ORTHO05D004351 3.5e-167 592.4 560 56.1
Haze_15327 Corylus avellana HOM05D003561 ORTHO05D004351 8.7e-166 587.8 563 55.4
Cfa004087 Carpinus fangiana HOM05D003561 ORTHO05D004351 9.6e-165 584.3 561 55.3
Aa31sc72G40 Aethionema arabicum HOM05D003561 ORTHO05D004351 6.2e-164 581.6 555 57.7
Aqoxy6G02799 Aquilegia oxysepala HOM05D003561 ORTHO05D004351 2.4e-163 579.7 565 54.7
SGA_v2.0_scaffold225G43001 Striga asiatica HOM05D003561 ORTHO05D004351 1.5e-162 577.0 551 56.6
PSO675G3219 Papaver somniferum HOM05D003561 ORTHO05D004351 1.3e-161 573.9 559 54.4
PSO541G3211 Papaver somniferum HOM05D003561 ORTHO05D004351 1.1e-160 570.9 559 54.2
Atru.chr3.226 Acer truncatum HOM05D003561 ORTHO05D004351 4.2e-160 568.9 552 54.9
Hund06710 Selenicereus undatus HOM05D003561 ORTHO05D004351 2.7e-159 566.2 564 54.1
COL.COLO4_11519 Corchorus olitorius HOM05D003561 ORTHO05D004351 1.0e-158 564.3 558 53.6
HanXRQChr04g0128551 Helianthus annuus HOM05D003561 ORTHO05D004351 3.0e-158 562.8 569 53.4
ECA236G4994 Erigeron canadensis HOM05D003561 ORTHO05D004351 5.1e-158 562.0 561 54.4
Thecc.01G067200 Theobroma cacao HOM05D003561 ORTHO05D004351 6.7e-158 561.6 562 52.1
CiPaw.01G008500 Carya illinoinensis HOM05D003561 ORTHO05D004351 7.4e-157 558.1 559 53.7
Potri.007G051500 Populus trichocarpa HOM05D003561 ORTHO05D004351 1.6e-156 557.0 565 52.9
Thhalv10024491m.g Eutrema salsugineum HOM05D003561 ORTHO05D004351 1.2e-154 550.8 550 55.6
AUR62027366 Chenopodium quinoa HOM05D003561 ORTHO05D004351 3.4e-154 549.3 557 52.6
Ah.09g232050 Amaranthus hybridus HOM05D003561 ORTHO05D004351 4.5e-154 548.9 563 52.8
CARHR242490 Cardamine hirsuta HOM05D003561 ORTHO05D004351 1.0e-153 547.7 548 55.3
Manes.13G115200 Manihot esculenta HOM05D003561 ORTHO05D004351 2.2e-153 546.6 568 52.8
Duzib147G0573 Durio zibethinus HOM05D003561 ORTHO05D004351 3.8e-153 545.8 565 50.3
THA.LOC104819541 Tarenaya hassleriana HOM05D003561 ORTHO05D004351 1.9e-152 543.5 549 53.7
BraA01t00401Z Brassica rapa HOM05D003561 ORTHO05D004351 9.3e-152 541.2 549 54.1
Ciclev10024935m.g Citrus clementina HOM05D003561 ORTHO05D004351 1.6e-151 540.4 553 52.3
A01p04120 Brassica napus HOM05D003561 ORTHO05D004351 4.6e-151 538.9 549 54.1
AL7G16990 Arabidopsis lyrata HOM05D003561 ORTHO05D004351 3.0e-150 536.2 552 54.7
BcaNung04991 Brassica carinata HOM05D003561 ORTHO05D004351 3.9e-150 535.8 549 53.7
Carub.0007s0608 Capsella rubella HOM05D003561 ORTHO05D004351 5.1e-150 535.4 551 54.8
SalBow6G0742 Salvia bowleyana HOM05D003561 ORTHO05D004351 5.1e-150 535.4 491 57.8
C01p04490 Brassica napus HOM05D003561 ORTHO05D004351 1.1e-149 534.3 549 53.6
BolC1t00435H Brassica oleracea HOM05D003561 ORTHO05D004351 1.1e-149 534.3 549 53.6
CSS0044154 Camellia sinensis var. sinensis HOM05D003561 ORTHO05D004351 4.3e-149 532.3 554 51.6
AUR62031283 Chenopodium quinoa HOM05D003561 ORTHO05D004351 4.3e-149 532.3 545 52.7
Lsat_1_v5_gn_7_85901 Lactuca sativa HOM05D003561 ORTHO05D004351 9.6e-149 531.2 566 52.1
DCAR_010841 Daucus carota HOM05D003561 ORTHO05D004351 4.1e-147 525.8 552 50.2
Actinidia12002 Actinidia chinensis HOM05D003561 ORTHO05D004351 5.3e-147 525.4 554 51.4
RcHm_v2.0_Chr6g0254291 Rosa chinensis HOM05D003561 ORTHO05D004351 6.9e-147 525.0 371 67.9
CANSAT01G2799 Cannabis sativa HOM05D003561 ORTHO05D004351 2.0e-146 523.5 563 50.8
Gohir.A02G153700 Gossypium hirsutum HOM05D003561 ORTHO05D004351 3.4e-146 522.7 549 51.2
Gohir.D03G026700 Gossypium hirsutum HOM05D003561 ORTHO05D004351 5.8e-146 521.9 549 51.2
Gorai.003G028400 Gossypium raimondii HOM05D003561 ORTHO05D004351 7.6e-146 521.5 549 50.8
AT4G34280 Arabidopsis thaliana HOM05D003561 ORTHO05D004351 8.4e-145 518.1 551 53.2
GSVIVG01000167001 Vitis vinifera HOM05D003561 ORTHO05D004351 8.4e-145 518.1 550 52.4
Prupe.6G225400 Prunus persica HOM05D003561 ORTHO05D004351 3.5e-143 512.7 549 50.3
Nitab4.5_0000284g0010 Nicotiana tabacum HOM05D003561 ORTHO05D004351 7.9e-143 511.5 551 50.3
Nitab4.5_0000604g0020 Nicotiana tabacum HOM05D003561 ORTHO05D004351 1.3e-142 510.8 551 50.5
vmacro05379 Vaccinium macrocarpon HOM05D003561 ORTHO05D004351 2.3e-142 510.0 553 50.3
Sp7g32080 Schrenkiella parvula HOM05D003561 ORTHO05D004351 3.9e-142 509.2 555 51.4
Hma1.2p1_0239F.1_g099850 Hydrangea macrophylla HOM05D003561 ORTHO05D004351 6.7e-142 508.4 552 51.1
Lj7C86G5 Lonicera japonica HOM05D003561 ORTHO05D004351 6.7e-142 508.4 548 50.5
FAN26G2049 Fragaria x ananassa HOM05D003561 ORTHO05D004351 1.9e-141 506.9 549 50.3
MD02G1180800 Malus domestica HOM05D003561 ORTHO05D004351 4.3e-141 505.8 550 49.6
Rhsim10G0104800 Rhododendron simsii HOM05D003561 ORTHO05D004351 4.3e-141 505.8 552 49.5
FAN19G0232 Fragaria x ananassa HOM05D003561 ORTHO05D004351 9.7e-141 504.6 549 50.3
Solyc02g064800.3 Solanum lycopersicum HOM05D003561 ORTHO05D004351 1.3e-140 504.2 553 50.1
CAN.G1482.2 Capsicum annuum HOM05D003561 ORTHO05D004351 1.6e-140 503.8 551 50.1
RcHm_v2.0_Chr2g0107231 Rosa chinensis HOM05D003561 ORTHO05D004351 3.7e-140 502.7 549 49.5
FvH4_1g17060 Fragaria vesca HOM05D003561 ORTHO05D004351 1.1e-139 501.1 549 49.9
FAN28G0575 Fragaria x ananassa HOM05D003561 ORTHO05D004351 1.1e-139 501.1 549 49.7
Sopen02g014910 Solanum pennellii HOM05D003561 ORTHO05D004351 1.1e-139 501.1 553 49.7
Peaxi162Scf00449g00016 Petunia axillaris HOM05D003561 ORTHO05D004351 3.1e-139 499.6 564 48.9
BcaNung04160 Brassica carinata HOM05D003561 ORTHO05D004351 6.9e-139 498.4 551 52.3
Eucgr.H02268 Eucalyptus grandis HOM05D003561 ORTHO05D004351 1.7e-137 493.8 549 48.6
PGR102G2010 Punica granatum HOM05D003561 ORTHO05D004351 2.9e-137 493.0 552 49.6
PGSC0003DMG400013016 Solanum tuberosum HOM05D003561 ORTHO05D004351 3.8e-137 492.7 552 49.6
EL10Ac6g15669 Beta vulgaris HOM05D003561 ORTHO05D004351 5.0e-137 492.3 549 48.3
RcHm_v2.0_Chr6g0254371 Rosa chinensis HOM05D003561 ORTHO05D004351 8.5e-137 491.5 424 61.1
Hund13924 Selenicereus undatus HOM05D003561 ORTHO05D004351 8.5e-137 491.5 556 48.2
Hund29372 Selenicereus undatus HOM05D003561 ORTHO05D004351 3.2e-136 489.6 553 48.6
Hund29375 Selenicereus undatus HOM05D003561 ORTHO05D004351 3.2e-136 489.6 553 48.6
Ah.03g146260 Amaranthus hybridus HOM05D003561 ORTHO05D004351 4.6e-135 485.7 554 49.1
AUR62003959 Chenopodium quinoa HOM05D003561 ORTHO05D004351 4.6e-135 485.7 549 49.2
ECA238G3157 Erigeron canadensis HOM05D003561 ORTHO05D004351 1.1e-133 481.1 549 48.6
Cc07_g06660 Coffea canephora HOM05D003561 ORTHO05D004351 3.1e-131 473.0 551 47.2
HanXRQChr14g0449611 Helianthus annuus HOM05D003561 ORTHO05D004351 7.7e-130 468.4 550 47.8
SEGI_28319 Sequoiadendron giganteum HOM05D003561 ORTHO05D004351 3.0e-126 456.4 648 42.0
SEGI_36307 Sequoiadendron giganteum HOM05D003561 ORTHO05D004351 3.0e-126 456.4 648 42.0
Lsat_1_v5_gn_2_83541 Lactuca sativa HOM05D003561 ORTHO05D004351 1.1e-125 454.5 550 45.5
AUR62038271 Chenopodium quinoa HOM05D003561 ORTHO05D004351 2.9e-121 439.9 549 45.7
AagrBONN_evm.TU.Sc2ySwM_111.1 Anthoceros agrestis HOM05D003561 ORTHO05D004351 3.0e-118 429.9 592 42.6
Oeu003572.1 Olea europaea HOM05D003561 ORTHO05D004351 9.7e-117 424.9 552 45.3
Atru.chr3.215 Acer truncatum HOM05D003561 ORTHO05D004351 2.7e-111 406.8 298 66.4
Rhsim10G0162500 Rhododendron simsii HOM05D003561 ORTHO05D004351 5.2e-110 402.5 366 59.0
Dinv30056 Davidia involucrata HOM05D003561 ORTHO05D004351 7.7e-106 388.7 469 47.5
Pp3c18_4410 Physcomitrium patens HOM05D003561 ORTHO05D004351 1.5e-104 384.4 725 34.9
Pp3c22_17660 Physcomitrium patens HOM05D003561 ORTHO05D004351 1.0e-102 378.3 727 35.4
Rhsim10G0161500 Rhododendron simsii HOM05D003561 ORTHO05D004351 3.5e-98 363.2 548 41.1
SMO145G0124 Selaginella moellendorffii HOM05D003561 ORTHO05D004351 1.7e-97 360.9 571 39.1
SalBow1G5992 Salvia bowleyana HOM05D003561 ORTHO05D004351 6.1e-95 352.4 322 56.5
SGA_v2.0_scaffold143G35782 Striga asiatica HOM05D003561 ORTHO05D004351 5.9e-90 335.9 301 57.1
Cpa.g.sc6.62 Carica papaya HOM05D003561 ORTHO05D004351 4.6e-82 309.7 193 74.1
PRCOL_00006635 Prasinoderma coloniale HOM05D003561 ORTHO05D004351 9.5e-80 302.0 369 44.7
Rhsim05G0089000 Rhododendron simsii HOM05D003561 ORTHO05D000355 2.8e-71 273.9 238 60.1
AagrBONN_evm.TU.Sc2ySwM_340.381 Anthoceros agrestis HOM05D003561 ORTHO05D004351 6.2e-55 219.5 567 31.2
CSS0044953 Camellia sinensis var. sinensis HOM05D003561 ORTHO05D004351 8.4e-52 209.1 207 52.7
PGSC0003DMG400026677 Solanum tuberosum HOM05D003561 ORTHO05D004351 3.3e-48 197.2 150 64.0
Rhsim10G0161900 Rhododendron simsii HOM05D003561 ORTHO05D000355 6.2e-47 193.0 167 59.3
Migut.H00379 Erythranthe guttata HOM05D003561 ORTHO05D004351 2.0e-45 188.0 301 38.2
Atru.chr3.214 Acer truncatum HOM05D003561 ORTHO05D004351 1.6e-34 151.8 240 40.0
Cpa.g.sc6.61 Carica papaya HOM05D003561 ORTHO05D004351 4.1e-30 137.1 265 38.1
Sc07g0000620 Simmondsia chinensis HOM05D003561 ORTHO05D004351 1.6e-26 125.2 291 29.9
QL11p032339 Quercus lobata HOM05D003561 ORTHO05D004351 2.4e-22 111.3 83 71.1
RcHm_v2.0_Chr6g0254281 Rosa chinensis HOM05D003561 ORTHO05D004351 1.7e-20 105.1 72 69.4
Oeu027122.1 Olea europaea HOM05D003561 ORTHO05D004351 3.8e-20 104.0 57 78.9
C09p50480 Brassica napus HOM05D003561 ORTHO05D004351 1.8e-17 95.1 93 58.1
C02p15790 Brassica napus HOM05D003561 ORTHO05D004351 6.7e-17 93.2 79 60.8
BolC3t20255H Brassica oleracea HOM05D003561 ORTHO05D004351 6.7e-17 93.2 79 60.8
BolC2t11906H Brassica oleracea HOM05D003561 ORTHO05D004351 1.3e-15 89.0 79 58.2
BolC9t55360H Brassica oleracea HOM05D003561 ORTHO05D004351 2.2e-15 88.2 79 59.5
Lj9C47T4 Lonicera japonica HOM05D003561 ORTHO05D004351 5.3e-14 83.6 56 67.9
DCAR_017864 Daucus carota HOM05D003561 ORTHO05D004351 1.2e-13 82.4 46 78.3
C09p44740 Brassica napus HOM05D003561 ORTHO05D004351 4.5e-13 80.5 68 61.8
Solyc01g067990.1 Solanum lycopersicum HOM05D003561 ORTHO05D004351 1.7e-12 78.6 153 34.6
Lj9C43T3 Lonicera japonica HOM05D003561 ORTHO05D004351 2.9e-12 77.8 56 60.7
RcHm_v2.0_Chr6g0254361 Rosa chinensis HOM05D003561 ORTHO05D004351 3.2e-11 74.3 49 71.4
Sc07g0000630 Simmondsia chinensis HOM05D003561 ORTHO05D004351 2.7e-10 71.2 41 73.2
BcaC08g47551 Brassica carinata HOM05D004232 ORTHO05D004909 3.7e-07 60.8 156 25.6
BolC6t40394H Brassica oleracea HOM05D004232 ORTHO05D004909 3.7e-07 60.8 156 25.6
SMO271G0180 Selaginella moellendorffii HOM05D001260 ORTHO05D004134 3.7e-07 60.8 183 23.0
TWI63G0539 Tripterygium wilfordii HOM05D004232 ORTHO05D004909 6.3e-07 60.1 204 23.0
Aa31LG1G2250 Aethionema arabicum HOM05D004232 ORTHO05D004909 1.8e-06 58.5 184 25.0


User provided reference genes

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