Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc29.95 Carica papaya HOM05D005292 ORTHO05D006473 2.1e-230 802.0 397 100.0
Duzib084G0213 Durio zibethinus HOM05D005292 ORTHO05D006473 1.7e-176 622.9 396 78.8
Thecc.03G261400 Theobroma cacao HOM05D005292 ORTHO05D006473 2.3e-176 622.5 396 78.8
GSVIVG01004916001 Vitis vinifera HOM05D005292 ORTHO05D006473 2.3e-176 622.5 370 83.0
QL12p014915 Quercus lobata HOM05D005292 ORTHO05D006473 6.6e-176 620.9 397 79.1
Cfa012803 Carpinus fangiana HOM05D005292 ORTHO05D006473 1.9e-175 619.4 396 79.0
COL.COLO4_31983 Corchorus olitorius HOM05D005292 ORTHO05D006473 2.0e-172 609.4 396 77.5
CiPaw.11G147800 Carya illinoinensis HOM05D005292 ORTHO05D006473 4.9e-171 604.7 397 78.1
CANSAT80G2034 Cannabis sativa HOM05D005292 ORTHO05D006473 6.4e-171 604.4 395 77.7
Atru.chr9.1428 Acer truncatum HOM05D005292 ORTHO05D006473 1.6e-169 599.7 385 79.7
Phvul.003G214500 Phaseolus vulgaris HOM05D005292 ORTHO05D006473 4.6e-169 598.2 394 76.1
MD04G1079900 Malus domestica HOM05D005292 ORTHO05D006473 7.9e-169 597.4 399 74.9
CiPaw.12G105300 Carya illinoinensis HOM05D005292 ORTHO05D006473 3.9e-168 595.1 352 84.9
Lj4g0005126 Lotus japonicus HOM05D005292 ORTHO05D006473 3.9e-168 595.1 395 76.5
Glyma.05G052500 Glycine max HOM05D005292 ORTHO05D006473 6.7e-168 594.3 395 75.9
Prupe.5G079200 Prunus persica HOM05D005292 ORTHO05D006473 6.7e-168 594.3 403 75.4
Manes.02G033900 Manihot esculenta HOM05D005292 ORTHO05D006473 4.3e-167 591.7 395 77.5
arahy.Tifrunner.gnm1.ann1.VS5X7Y Arachis hypogaea HOM05D005292 ORTHO05D006473 9.6e-167 590.5 396 76.8
Gorai.007G021400 Gossypium raimondii HOM05D005292 ORTHO05D006473 1.6e-166 589.7 397 75.6
Ciclev10020454m.g Citrus clementina HOM05D005292 ORTHO05D006473 2.1e-166 589.3 395 75.9
Potri.001G118000 Populus trichocarpa HOM05D005292 ORTHO05D006473 2.1e-166 589.3 395 75.9
arahy.Tifrunner.gnm1.ann1.YRMJ3W Arachis hypogaea HOM05D005292 ORTHO05D006473 3.7e-166 588.6 396 76.5
Ca_12278_v3 Cicer arietinum L. HOM05D005292 ORTHO05D006473 4.8e-166 588.2 400 73.5
Glyma.17G134700 Glycine max HOM05D005292 ORTHO05D006473 6.2e-166 587.8 387 78.0
Gohir.A03G012000 Gossypium hirsutum HOM05D005292 ORTHO05D006473 6.2e-166 587.8 396 75.0
Gohir.D03G157800 Gossypium hirsutum HOM05D005292 ORTHO05D006473 8.1e-166 587.4 396 74.7
TWI15G0139 Tripterygium wilfordii HOM05D005292 ORTHO05D006473 8.1e-166 587.4 396 74.2
VMungo1215G1740 Vigna mungo HOM05D005292 ORTHO05D006473 5.3e-165 584.7 394 75.6
Gohir.A11G020400 Gossypium hirsutum HOM05D005292 ORTHO05D006473 5.8e-164 581.3 396 74.7
Gohir.D12G223000 Gossypium hirsutum HOM05D005292 ORTHO05D006473 9.9e-164 580.5 395 74.9
TPR.G37684 Trifolium pratense HOM05D005292 ORTHO05D006473 1.7e-163 579.7 402 73.6
Lalb_Chr05g0225431 Lupinus albus HOM05D005292 ORTHO05D006473 4.9e-163 578.2 398 74.6
Gorai.003G166300 Gossypium raimondii HOM05D005292 ORTHO05D006473 4.2e-162 575.1 396 73.2
Medtr4g102260 Medicago truncatula HOM05D005292 ORTHO05D006473 6.0e-161 571.2 405 72.1
Sed0004099 Sechium edule HOM05D005292 ORTHO05D006473 6.0e-161 571.2 392 73.7
Gohir.D11G020100 Gossypium hirsutum HOM05D005292 ORTHO05D006473 1.0e-160 570.5 396 73.5
Gorai.008G239300 Gossypium raimondii HOM05D005292 ORTHO05D006473 1.0e-160 570.5 420 70.7
Nn1g01261 Nelumbo nucifera HOM05D005292 ORTHO05D006473 2.3e-160 569.3 388 73.5
Psat4g068120 Pisum sativum HOM05D005292 ORTHO05D006473 8.7e-160 567.4 403 72.5
CSS0004035 Camellia sinensis var. sinensis HOM05D005292 ORTHO05D006473 1.9e-159 566.2 409 70.9
Dinv21573 Davidia involucrata HOM05D005292 ORTHO05D006473 2.1e-158 562.8 399 72.7
Oeu016513.1 Olea europaea HOM05D005292 ORTHO05D006473 2.8e-158 562.4 396 73.2
RcHm_v2.0_Chr7g0201621 Rosa chinensis HOM05D005292 ORTHO05D006473 2.8e-158 562.4 402 72.1
Potri.003G114900 Populus trichocarpa HOM05D005292 ORTHO05D006473 4.8e-158 561.6 383 75.5
TAR636G1323 Trochodendron aralioides HOM05D005292 ORTHO05D006473 8.2e-158 560.8 350 80.0
THA.LOC104813867 Tarenaya hassleriana HOM05D005292 ORTHO05D006473 2.4e-157 559.3 296 89.9
CAN.G630.87 Capsicum annuum HOM05D005292 ORTHO05D006473 5.8e-156 554.7 398 70.1
CsaV3_5G003780 Cucumis sativus L. HOM05D005292 ORTHO05D006473 1.3e-155 553.5 386 72.8
PGR031G2306 Punica granatum HOM05D005292 ORTHO05D006473 8.4e-155 550.8 283 91.5
Peaxi162Scf00271g00021 Petunia axillaris HOM05D005292 ORTHO05D006473 4.2e-154 548.5 397 69.5
Hma1.2p1_0367F.1_g137040 Hydrangea macrophylla HOM05D005292 ORTHO05D006473 7.1e-154 547.7 364 75.5
Eucgr.D01991 Eucalyptus grandis HOM05D005292 ORTHO05D006473 1.2e-153 547.0 327 82.6
Nitab4.5_0003534g0020 Nicotiana tabacum HOM05D005292 ORTHO05D006473 1.2e-153 547.0 390 70.0
Lj8A255T56 Lonicera japonica HOM05D005292 ORTHO05D006473 3.5e-153 545.4 353 77.6
FAN04G0899 Fragaria x ananassa HOM05D005292 ORTHO05D006473 4.6e-153 545.0 402 70.1
PSO782G2032 Papaver somniferum HOM05D005292 ORTHO05D006473 1.3e-152 543.5 319 82.4
FAN13G3324 Fragaria x ananassa HOM05D005292 ORTHO05D006473 1.8e-152 543.1 402 70.1
FAN18G3339 Fragaria x ananassa HOM05D005292 ORTHO05D006473 1.8e-152 543.1 402 70.4
FAN08G1347 Fragaria x ananassa HOM05D005292 ORTHO05D006473 2.3e-152 542.7 397 71.0
Sopen08g027820 Solanum pennellii HOM05D005292 ORTHO05D006473 2.3e-152 542.7 397 68.5
Actinidia02093 Actinidia chinensis HOM05D005292 ORTHO05D006473 5.1e-152 541.6 287 89.2
Cc08_g13210 Coffea canephora HOM05D005292 ORTHO05D006473 5.1e-152 541.6 345 79.1
Aqoxy7G00654 Aquilegia oxysepala HOM05D005292 ORTHO05D006473 6.7e-152 541.2 332 80.1
CARHR254020 Cardamine hirsuta HOM05D005292 ORTHO05D006473 1.1e-151 540.4 294 87.4
MSTRG.12063 Avicennia marina HOM05D005292 ORTHO05D006473 1.5e-151 540.0 342 78.4
Thhalv10028717m.g Eutrema salsugineum HOM05D005292 ORTHO05D006473 3.3e-151 538.9 336 79.5
Solyc08g079450.3 Solanum lycopersicum HOM05D005292 ORTHO05D006473 4.3e-151 538.5 396 68.2
Sp6g05330 Schrenkiella parvula HOM05D005292 ORTHO05D006473 5.7e-151 538.1 300 86.0
Carub.0006s3135 Capsella rubella HOM05D005292 ORTHO05D006473 9.7e-151 537.3 333 79.6
SGA_v2.0_scaffold120G32820 Striga asiatica HOM05D005292 ORTHO05D006473 1.3e-150 537.0 432 66.7
MBI12_g31646_MAGBIO Magnolia biondii HOM05D005292 ORTHO05D006473 2.8e-150 535.8 399 70.7
AL6G47090 Arabidopsis lyrata HOM05D005292 ORTHO05D006473 3.7e-150 535.4 329 80.5
Sc22g0000600 Simmondsia chinensis HOM05D005292 ORTHO05D006473 1.1e-149 533.9 315 81.3
PGSC0003DMG400003959 Solanum tuberosum HOM05D005292 ORTHO05D006473 1.1e-149 533.9 404 67.6
EL10Ac5g12610 Beta vulgaris HOM05D005292 ORTHO05D006473 9.0e-149 530.8 317 81.4
Hund14648 Selenicereus undatus HOM05D005292 ORTHO05D006473 1.2e-148 530.4 317 83.0
Dinv39082 Davidia involucrata HOM05D005292 ORTHO05D006473 2.0e-148 529.6 400 69.0
Aa31LG9G10310 Aethionema arabicum HOM05D005292 ORTHO05D006473 2.6e-148 529.3 424 67.2
AT4G12230 Arabidopsis thaliana HOM05D005292 ORTHO05D006473 2.6e-148 529.3 329 79.6
PSO478G4449 Papaver somniferum HOM05D005292 ORTHO05D006473 2.6e-148 529.3 319 80.9
ECA233G3282 Erigeron canadensis HOM05D005292 ORTHO05D006473 4.5e-148 528.5 405 70.1
BcaB01g02654 Brassica carinata HOM05D005292 ORTHO05D006473 1.3e-147 526.9 333 79.0
Migut.A00832 Erythranthe guttata HOM05D005292 ORTHO05D006473 2.2e-147 526.2 287 86.4
Sabra01G0090700 Salix brachista HOM05D005292 ORTHO05D006473 6.5e-147 524.6 491 59.7
CDE09G1063 Ceratophyllum demersum HOM05D005292 ORTHO05D006473 1.4e-146 523.5 349 73.4
Haze_08610 Corylus avellana HOM05D005292 ORTHO05D006473 2.5e-146 522.7 421 67.5
BcaC01g04601 Brassica carinata HOM05D005292 ORTHO05D006473 3.2e-146 522.3 336 77.7
A03p29600 Brassica napus HOM05D005292 ORTHO05D006473 1.6e-145 520.0 336 77.7
Gohir.A12G220700 Gossypium hirsutum HOM05D005292 ORTHO05D006473 2.1e-145 519.6 323 79.3
BraA03t12155Z Brassica rapa HOM05D005292 ORTHO05D006473 3.6e-145 518.8 336 77.4
C03p35880 Brassica napus HOM05D005292 ORTHO05D006473 7.9e-145 517.7 337 77.4
BolC3t15896H Brassica oleracea HOM05D005292 ORTHO05D006473 7.9e-145 517.7 337 77.4
SalBow1G6483 Salvia bowleyana HOM05D005292 ORTHO05D006473 7.9e-145 517.7 369 71.3
DCAR_006803 Daucus carota HOM05D005292 ORTHO05D006473 1.8e-144 516.5 304 82.2
Nitab4.5_0007591g0040 Nicotiana tabacum HOM05D005292 ORTHO05D006473 1.8e-144 516.5 412 64.8
AUR62010507 Chenopodium quinoa HOM05D005292 ORTHO05D006473 2.3e-144 516.2 317 78.2
vmacro14043 Vaccinium macrocarpon HOM05D005292 ORTHO05D006473 2.3e-144 516.2 383 69.7
ClCG01G003660 Citrullus lanatus HOM05D005292 ORTHO05D006473 6.7e-144 514.6 360 73.6
HanXRQChr02g0046251 Helianthus annuus HOM05D005292 ORTHO05D006473 1.5e-143 513.5 416 65.6
HanXRQChr07g0188671 Helianthus annuus HOM05D005292 ORTHO05D006473 1.5e-143 513.5 347 75.2
Ah.12g058260 Amaranthus hybridus HOM05D005292 ORTHO05D006473 2.6e-140 502.7 349 71.9
Ah.02g116220 Amaranthus hybridus HOM05D005292 ORTHO05D006473 4.2e-138 495.4 282 81.2
Os10g0169800 Oryza sativa ssp. japonica HOM05D005292 ORTHO05D006473 4.2e-138 495.4 329 72.3
Nn4g26373 Nelumbo nucifera HOM05D005292 ORTHO05D006473 4.7e-137 491.9 357 68.9
TWI15G0397 Tripterygium wilfordii HOM05D005292 ORTHO05D006473 7.9e-137 491.1 395 65.6
Zm00001eb026990 Zea mays HOM05D005292 ORTHO05D006473 2.3e-136 489.6 301 76.4
unitig_744.g24320 Utricularia gibba HOM05D005292 ORTHO05D006473 3.1e-133 479.2 384 62.8
CDE11G0205 Ceratophyllum demersum HOM05D005292 ORTHO05D006473 9.1e-133 477.6 281 79.7
AUR62017394 Chenopodium quinoa HOM05D005292 ORTHO05D006473 2.6e-132 476.1 299 75.9
ATR0757G031 Amborella trichopoda HOM05D005292 ORTHO05D006473 1.0e-131 474.2 281 80.1
Lsat_1_v5_gn_6_9841 Lactuca sativa HOM05D005292 ORTHO05D006473 2.9e-131 472.6 327 73.7
HPP92_014608 Vanilla planifolia HOM05D005292 ORTHO05D006473 5.7e-127 458.4 305 73.8
Duzib205G1434 Durio zibethinus HOM05D005292 ORTHO05D006473 4.0e-120 435.6 396 61.4
SEGI_16146 Sequoiadendron giganteum HOM05D005292 ORTHO05D006473 1.3e-118 430.6 340 61.5
Rhsim07G0101700 Rhododendron simsii HOM05D005292 ORTHO05D006473 1.8e-117 426.8 437 55.8
FvH4_5g00640 Fragaria vesca HOM05D005292 ORTHO05D006473 1.6e-113 413.7 338 66.0
Pp3c6_20320 Physcomitrium patens HOM05D005292 ORTHO05D006473 3.6e-113 412.5 279 68.1
Sabra03G0079600 Salix brachista HOM05D005292 ORTHO05D006473 1.0e-112 411.0 219 89.5
Mapoly0066s0051 Marchantia polymorpha HOM05D005292 ORTHO05D006473 5.7e-111 405.2 272 68.8
SMO223G0031 Selaginella moellendorffii HOM05D005292 ORTHO05D006473 3.7e-110 402.5 274 66.8
AagrBONN_evm.TU.Sc2ySwM_368.248 Anthoceros agrestis HOM05D005292 ORTHO05D006473 3.3e-106 389.4 340 58.5
Oeu022319.3 Olea europaea HOM05D005292 ORTHO05D006473 5.4e-101 372.1 407 54.5
TAR629G1108 Trochodendron aralioides HOM05D005292 ORTHO05D006473 1.9e-98 363.6 183 90.7
Actinidia14462 Actinidia chinensis HOM05D005292 ORTHO05D006473 1.2e-95 354.4 403 52.1
Aa31LG11G5120 Aethionema arabicum HOM05D005292 ORTHO05D006473 3.7e-78 296.2 155 87.7
Dinv37766 Davidia involucrata HOM05D005292 ORTHO05D006473 3.3e-74 283.1 258 62.0
MD06G1074900 Malus domestica HOM05D005292 ORTHO05D006473 1.2e-73 281.2 147 87.8
MELO3C005579.2 Cucumis melo HOM05D005292 ORTHO05D006473 1.8e-51 207.6 204 58.8
Lsat_1_v5_gn_8_156781 Lactuca sativa HOM05D005292 ORTHO05D006473 6.9e-48 195.7 173 60.7
Lsat_1_v5_gn_8_88300 Lactuca sativa HOM05D005292 ORTHO05D006473 1.6e-44 184.5 238 45.0
Lsat_1_v5_gn_2_99060 Lactuca sativa HOM05D005292 ORTHO05D006473 4.8e-41 172.9 120 74.2
TAR636G3691 Trochodendron aralioides HOM05D005292 ORTHO05D006473 6.5e-38 162.5 133 65.4
SEGI_25328 Sequoiadendron giganteum HOM05D005292 ORTHO05D006473 1.2e-36 158.3 94 70.2
Lsat_1_v5_gn_8_99640 Lactuca sativa HOM05D005292 ORTHO05D006473 4.6e-36 156.4 161 53.4
Glyma.05G052200 Glycine max HOM05D005292 ORTHO05D006473 6.9e-32 142.5 152 53.9
SEGI_08273 Sequoiadendron giganteum HOM05D005292 ORTHO05D006473 4.5e-31 139.8 84 79.8
Cc08_g13200 Coffea canephora HOM05D005292 ORTHO05D006473 3.8e-30 136.7 66 92.4
CDE11G1060 Ceratophyllum demersum HOM05D005292 ORTHO05D006473 1.4e-27 128.3 66 83.3
MD06G1074800 Malus domestica HOM05D005292 ORTHO05D006473 2.5e-26 124.0 72 86.1
SEGI_15988 Sequoiadendron giganteum HOM05D005292 ORTHO05D006473 1.4e-24 118.2 66 81.8
TWI81G0363 Tripterygium wilfordii HOM05D005292 ORTHO05D006473 7.2e-21 105.9 71 73.2
Eucgr.C02046 Eucalyptus grandis HOM05D005292 ORTHO05D006473 3.7e-17 93.6 48 85.4
vmacro17465 Vaccinium macrocarpon HOM05D002883 ORTHO05D003116 9.1e-16 89.0 66 63.6
Peaxi162Scf00102g01237 Petunia axillaris HOM05D000023 ORTHO05D013611 1.6e-07 61.6 46 60.9
Lsat_1_v5_gn_8_121800 Lactuca sativa HOM05D001816 ORTHO05D002001 8.5e-06 55.8 176 30.1


User provided reference genes

Program Settings