Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc29.89 Carica papaya HOM05D005346 ORTHO05D007051 5.8e-119 431.0 236 100.0
THA.LOC104809446 Tarenaya hassleriana HOM05D005346 ORTHO05D007051 6.5e-86 321.2 243 78.2
Duzib084G0498 Durio zibethinus HOM05D005346 ORTHO05D007051 1.1e-85 320.5 239 79.9
Atru.chr9.1434 Acer truncatum HOM05D005346 ORTHO05D007051 9.3e-85 317.4 237 75.5
Gorai.003G166600 Gossypium raimondii HOM05D005346 ORTHO05D007051 9.3e-85 317.4 238 78.2
Gohir.A03G011800 Gossypium hirsutum HOM05D005346 ORTHO05D007051 4.6e-84 315.1 238 77.7
TWI60G0731 Tripterygium wilfordii HOM05D005346 ORTHO05D007051 4.6e-84 315.1 238 77.3
GSVIVG01004909001 Vitis vinifera HOM05D005346 ORTHO05D007051 1.3e-83 313.5 236 77.5
BcaC04g22452 Brassica carinata HOM05D005346 ORTHO05D007051 3.9e-83 312.0 237 75.1
CiPaw.12G104700 Carya illinoinensis HOM05D005346 ORTHO05D007051 1.1e-82 310.5 236 78.8
Manes.01G073500 Manihot esculenta HOM05D005346 ORTHO05D007051 1.5e-82 310.1 238 79.0
BolC9t54826H Brassica oleracea HOM05D005346 ORTHO05D007051 1.9e-82 309.7 237 74.7
A09p15920 Brassica napus HOM05D005346 ORTHO05D007051 2.5e-82 309.3 237 74.7
C09p19170 Brassica napus HOM05D005346 ORTHO05D007051 2.5e-82 309.3 237 74.7
BraA09t37228Z Brassica rapa HOM05D005346 ORTHO05D007051 2.5e-82 309.3 237 74.7
Potri.003G115300 Populus trichocarpa HOM05D005346 ORTHO05D007051 5.7e-82 308.1 243 75.7
Ciclev10021953m.g Citrus clementina HOM05D005346 ORTHO05D007051 9.7e-82 307.4 240 75.4
Carub.0002s0213 Capsella rubella HOM05D005346 ORTHO05D007051 1.3e-81 307.0 238 74.8
COL.COLO4_23877 Corchorus olitorius HOM05D005346 ORTHO05D007051 1.1e-80 303.9 255 72.9
Dinv39076 Davidia involucrata HOM05D005346 ORTHO05D007051 3.1e-80 302.4 239 69.9
Haze_09052 Corylus avellana HOM05D005346 ORTHO05D007051 6.9e-80 301.2 236 73.3
Eucgr.E00475 Eucalyptus grandis HOM05D005346 ORTHO05D007051 9.0e-80 300.8 236 75.4
Actinidia02088 Actinidia chinensis HOM05D005346 ORTHO05D007051 4.5e-79 298.5 238 70.2
Cfa012017 Carpinus fangiana HOM05D005346 ORTHO05D007051 4.5e-79 298.5 236 73.3
BcaB07g31363 Brassica carinata HOM05D005346 ORTHO05D007051 7.7e-79 297.7 240 74.2
QL05p030033 Quercus lobata HOM05D005346 ORTHO05D007051 1.3e-78 297.0 236 77.1
QL12p015018 Quercus lobata HOM05D005346 ORTHO05D007051 1.3e-78 297.0 236 77.1
AL2G12910 Arabidopsis lyrata HOM05D005346 ORTHO05D007051 1.7e-78 296.6 238 73.9
AT1G62850 Arabidopsis thaliana HOM05D005346 ORTHO05D007051 2.2e-78 296.2 238 74.4
PGR042G0462 Punica granatum HOM05D005346 ORTHO05D007051 2.2e-78 296.2 239 74.9
Potri.001G117500 Populus trichocarpa HOM05D005346 ORTHO05D007051 4.2e-77 292.0 236 73.7
Aa31LG2G370 Aethionema arabicum HOM05D005346 ORTHO05D007051 5.5e-77 291.6 239 73.2
Nn4g26377 Nelumbo nucifera HOM05D005346 ORTHO05D007051 5.5e-77 291.6 233 73.8
Thhalv10023661m.g Eutrema salsugineum HOM05D005346 ORTHO05D007051 4.6e-76 288.5 243 71.2
CARHR048890 Cardamine hirsuta HOM05D005346 ORTHO05D007051 6.1e-76 288.1 238 71.8
MELO3C013984.2 Cucumis melo HOM05D005346 ORTHO05D007051 6.1e-76 288.1 238 73.5
TAR629G0356 Trochodendron aralioides HOM05D005346 ORTHO05D007051 7.9e-76 287.7 239 72.0
CANSAT21G2498 Cannabis sativa HOM05D005346 ORTHO05D007051 2.3e-75 286.2 245 72.7
CsaV3_3G003190 Cucumis sativus L. HOM05D005346 ORTHO05D007051 2.3e-75 286.2 236 72.5
CSS0047104 Camellia sinensis var. sinensis HOM05D005346 ORTHO05D007051 3.9e-75 285.4 244 68.9
CSS0010264 Camellia sinensis var. sinensis HOM05D005346 ORTHO05D007051 2.0e-74 283.1 244 68.4
Sp2g01760 Schrenkiella parvula HOM05D005346 ORTHO05D007051 2.0e-74 283.1 240 70.8
RcHm_v2.0_Chr7g0201521 Rosa chinensis HOM05D005346 ORTHO05D007051 4.3e-74 282.0 238 71.8
DCAR_006800 Daucus carota HOM05D005346 ORTHO05D007051 9.7e-74 280.8 246 64.6
MD04G1079400 Malus domestica HOM05D005346 ORTHO05D007051 2.2e-73 279.6 236 70.8
Prupe.5G079700 Prunus persica HOM05D005346 ORTHO05D007051 2.8e-73 279.3 236 72.5
Sc22g0000580 Simmondsia chinensis HOM05D005346 ORTHO05D007051 6.3e-73 278.1 236 69.5
Sabra03G0079900 Salix brachista HOM05D005346 ORTHO05D007051 8.2e-73 277.7 168 91.7
arahy.Tifrunner.gnm1.ann1.FP1HKG Arachis hypogaea HOM05D005346 ORTHO05D007051 1.4e-72 276.9 241 71.4
HanXRQChr17g0549091 Helianthus annuus HOM05D005346 ORTHO05D007051 3.1e-72 275.8 236 70.8
Aqoxy7G00648 Aquilegia oxysepala HOM05D005346 ORTHO05D007051 4.1e-72 275.4 236 68.2
FvH4_5g00690 Fragaria vesca HOM05D005346 ORTHO05D007051 5.3e-72 275.0 182 85.2
Lalb_Chr05g0225391 Lupinus albus HOM05D005346 ORTHO05D007051 5.3e-72 275.0 233 73.4
Solyc08g079490.4 Solanum lycopersicum HOM05D005346 ORTHO05D007051 5.3e-72 275.0 246 63.8
CSS0033087 Camellia sinensis var. sinensis HOM05D005346 ORTHO05D007051 9.1e-72 274.2 246 65.4
Nitab4.5_0012948g0030 Nicotiana tabacum HOM05D005346 ORTHO05D007051 9.1e-72 274.2 255 62.4
Sopen08g027860 Solanum pennellii HOM05D005346 ORTHO05D007051 9.1e-72 274.2 250 62.8
FAN04G2793 Fragaria x ananassa HOM05D000062 ORTHO05D007051 1.2e-71 273.9 182 84.6
MBI12_g34008_MAGBIO Magnolia biondii HOM05D005346 ORTHO05D007051 1.2e-71 273.9 240 68.3
Sed0008355 Sechium edule HOM05D005346 ORTHO05D007051 1.5e-71 273.5 268 64.9
FAN13G0616 Fragaria x ananassa HOM05D005346 ORTHO05D007051 4.5e-71 271.9 182 84.1
PSO782G1275 Papaver somniferum HOM05D005346 ORTHO05D007051 5.9e-71 271.6 239 68.2
Cc08_g13250 Coffea canephora HOM05D005346 ORTHO05D007051 1.0e-70 270.8 244 64.8
Glyma.17G135200 Glycine max HOM05D005346 ORTHO05D007051 1.0e-70 270.8 232 72.0
Rhsim07G0101400 Rhododendron simsii HOM05D005346 ORTHO05D007051 1.7e-70 270.0 237 64.1
PSO478G1917 Papaver somniferum HOM05D005346 ORTHO05D007051 2.2e-70 269.6 232 69.0
Lj4g0017997 Lotus japonicus HOM05D005346 ORTHO05D007051 6.5e-70 268.1 237 68.8
EL10Ac5g12617 Beta vulgaris HOM05D005346 ORTHO05D007051 1.4e-69 266.9 238 67.6
CAN.G630.80 Capsicum annuum HOM05D005346 ORTHO05D007051 2.5e-69 266.2 243 61.7
Peaxi162Scf00271g00130 Petunia axillaris HOM05D005346 ORTHO05D007051 3.2e-69 265.8 234 62.8
ATR0579G161 Amborella trichopoda HOM05D005346 ORTHO05D007051 7.2e-69 264.6 197 76.1
AUR62010513 Chenopodium quinoa HOM05D005346 ORTHO05D007051 7.2e-69 264.6 238 63.4
AUR62017389 Chenopodium quinoa HOM05D005346 ORTHO05D007051 9.4e-69 264.2 238 63.4
Sabra01G0090200 Salix brachista HOM05D005346 ORTHO05D007051 9.4e-69 264.2 173 86.1
Oeu016508.1 Olea europaea HOM05D005346 ORTHO05D007051 1.2e-68 263.8 241 62.2
Phvul.003G215000 Phaseolus vulgaris HOM05D005346 ORTHO05D007051 1.2e-68 263.8 182 83.0
MSTRG.25547 Avicennia marina HOM05D005346 ORTHO05D007051 1.4e-67 260.4 247 60.3
VMungo1215G1290 Vigna mungo HOM05D005346 ORTHO05D007051 2.3e-67 259.6 182 80.8
Medtr4g102230 Medicago truncatula HOM05D005346 ORTHO05D007051 1.5e-66 256.9 238 68.1
PGSC0003DMG400003934 Solanum tuberosum HOM05D005346 ORTHO05D007051 5.7e-66 255.0 281 55.2
TAR629G0085 Trochodendron aralioides HOM05D005346 ORTHO05D007051 7.4e-66 254.6 176 81.8
CDE11G0613 Ceratophyllum demersum HOM05D005346 ORTHO05D007051 9.7e-66 254.2 191 75.9
Lsat_1_v5_gn_6_9800 Lactuca sativa HOM05D005346 ORTHO05D007051 2.8e-65 252.7 241 62.2
ClCG10G003160 Citrullus lanatus HOM05D005346 ORTHO05D007051 3.7e-65 252.3 254 65.7
Psat4g068640 Pisum sativum HOM05D005346 ORTHO05D007051 3.7e-65 252.3 244 68.9
Hma1.2p1_0138F.1_g063170 Hydrangea macrophylla HOM05D005346 ORTHO05D007051 4.8e-65 251.9 185 71.4
HPP92_003521 Vanilla planifolia HOM05D005346 ORTHO05D007051 1.1e-64 250.8 181 77.9
SGA_v2.0_scaffold120G32813 Striga asiatica HOM05D002260 ORTHO05D000476 1.4e-64 250.4 189 69.3
Thecc.03G262000 Theobroma cacao HOM05D005346 ORTHO05D007051 3.1e-64 249.2 184 73.4
Zm00001eb010680 Zea mays HOM05D005346 ORTHO05D007051 3.1e-64 249.2 183 77.0
Hund28689 Selenicereus undatus HOM05D005346 ORTHO05D007051 1.5e-63 246.9 239 66.5
Hund28691 Selenicereus undatus HOM05D005346 ORTHO05D007051 1.5e-63 246.9 239 66.5
ECA233G1833 Erigeron canadensis HOM05D005346 ORTHO05D007051 2.2e-62 243.0 187 75.4
Migut.E01045 Erythranthe guttata HOM05D005346 ORTHO05D007051 2.9e-62 242.7 196 66.8
unitig_749.g13414 Utricularia gibba HOM05D005346 ORTHO05D007051 7.2e-61 238.0 216 59.7
SGA_v2.0_scaffold146G36182 Striga asiatica HOM05D005346 ORTHO05D007051 9.4e-61 237.7 254 57.5
Lj8A255T54 Lonicera japonica HOM05D005346 ORTHO05D007051 1.6e-60 236.9 250 58.0
Gohir.D03G158100 Gossypium hirsutum HOM05D005346 ORTHO05D007051 2.3e-59 233.0 238 64.3
vmacro14041 Vaccinium macrocarpon HOM05D005346 ORTHO05D007051 3.7e-57 225.7 218 61.0
Os03g0249200 Oryza sativa ssp. japonica HOM05D005346 ORTHO05D007051 1.7e-54 216.9 183 70.5
Ca_12281_v3 Cicer arietinum L. HOM05D002260 ORTHO05D007051 3.8e-54 215.7 158 79.7
SalBow6G4970 Salvia bowleyana HOM05D005346 ORTHO05D007051 3.8e-54 215.7 258 50.4
Glyma.05G052900 Glycine max HOM05D005346 ORTHO05D007051 8.5e-54 214.5 204 63.7
SEGI_23485 Sequoiadendron giganteum HOM05D005346 ORTHO05D007051 3.6e-52 209.1 168 67.3
MSTRG.12059 Avicennia marina HOM05D005346 ORTHO05D007051 1.8e-51 206.8 190 60.5
TPR.G37664 Trifolium pratense HOM05D005346 ORTHO05D007051 5.2e-51 205.3 198 62.1
SGA_v2.0_scaffold196G40944 Striga asiatica HOM05D005346 ORTHO05D007051 9.8e-50 201.1 194 56.2
Pp3c9_5680 Physcomitrium patens HOM05D005346 ORTHO05D007051 2.7e-47 193.0 180 57.8
arahy.Tifrunner.gnm1.ann1.IL3HUZ Arachis hypogaea HOM05D005346 ORTHO05D007051 8.0e-44 181.4 326 46.6
SEGI_25852 Sequoiadendron giganteum HOM05D005346 ORTHO05D007051 4.4e-42 175.6 125 81.6
CBR_g59652 Chara braunii HOM05D005346 ORTHO05D007051 2.0e-39 166.8 144 60.4
Mapoly0185s0016 Marchantia polymorpha HOM05D005346 ORTHO05D007051 1.0e-38 164.5 137 64.2
Gorai.005G179200 Gossypium raimondii HOM05D005346 ORTHO05D007051 1.9e-37 160.2 99 82.8
SalBow1G0489 Salvia bowleyana HOM05D005346 ORTHO05D007051 5.6e-37 158.7 174 52.9
Gorai.011G192800 Gossypium raimondii HOM05D005346 ORTHO05D007051 2.1e-36 156.8 99 80.8
Gohir.D06G129850 Gossypium hirsutum HOM05D005346 ORTHO05D007051 8.0e-36 154.8 99 79.8
Gorai.002G177500 Gossypium raimondii HOM05D005346 ORTHO05D007051 1.3e-33 147.5 94 78.7
Migut.E01266 Erythranthe guttata HOM05D005346 ORTHO05D007051 6.6e-30 135.2 99 67.7
Actinidia14465 Actinidia chinensis HOM05D005346 ORTHO05D007051 1.2e-28 131.0 218 42.2
VMungo1215G3342 Vigna mungo HOM05D005346 ORTHO05D007051 4.0e-27 125.9 97 80.4
Gohir.D13G182400 Gossypium hirsutum HOM05D005346 ORTHO05D007051 2.6e-26 123.2 73 82.2
Nitab4.5_0001816g0160 Nicotiana tabacum HOM05D005346 ORTHO05D020323 2.9e-25 119.8 215 40.5
Peaxi162Scf00102g01240 Petunia axillaris HOM05D005346 ORTHO05D020323 1.1e-24 117.9 261 36.4
PRCOL_00004903 Prasinoderma coloniale HOM05D005346 ORTHO05D007051 1.1e-24 117.9 123 49.6
MCO12G072 Micromonas commoda HOM05D005346 ORTHO05D007051 4.1e-24 115.9 100 57.0
Cre02.g101800 Chlamydomonas reinhardtii HOM05D005346 ORTHO05D007051 5.4e-24 115.5 160 44.4
Sopen08g003450 Solanum pennellii HOM05D005346 ORTHO05D020323 1.2e-23 114.4 262 35.5
Solyc08g007490.3 Solanum lycopersicum HOM05D005346 ORTHO05D020323 1.6e-23 114.0 262 35.1
Nitab4.5_0001265g0030 Nicotiana tabacum HOM05D005346 ORTHO05D020323 4.6e-23 112.5 261 34.5
AagrBONN_evm.TU.Sc2ySwM_369.472 Anthoceros agrestis HOM05D005346 ORTHO05D007051 2.3e-22 110.2 79 65.8
SMO164G0226 Selaginella moellendorffii HOM05D005346 ORTHO05D007051 1.1e-21 107.8 153 45.1
SEGI_00698 Sequoiadendron giganteum HOM05D005346 ORTHO05D007051 4.0e-19 99.4 82 65.9
SMO353G0412 Selaginella moellendorffii HOM05D000596 ORTHO05D001497 1.7e-17 94.0 177 37.9
Haze_26312 Corylus avellana HOM05D005346 ORTHO05D007051 2.3e-14 83.6 133 37.6
Nitab4.5_0003534g0100 Nicotiana tabacum HOM05D005346 ORTHO05D007051 2.8e-12 76.6 249 31.7
CAN.G1394.34 Capsicum annuum HOM05D005346 ORTHO05D020323 4.0e-11 72.8 122 40.2
Lj6g0026400 Lotus japonicus HOM05D005346 ORTHO05D007051 2.9e-09 66.6 51 66.7
SMO364G0639 Selaginella moellendorffii HOM05D000596 ORTHO05D001497 8.4e-09 65.1 133 35.3
TPR.G941 Trifolium pratense HOM05D005346 ORTHO05D007051 1.1e-08 64.7 53 84.9
PGSC0003DMG400012509 Solanum tuberosum HOM05D005346 ORTHO05D020323 7.1e-08 62.0 199 32.2
Actinidia02087 Actinidia chinensis HOM05D005346 ORTHO05D007051 3.9e-06 56.2 95 44.2


User provided reference genes

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