Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc29.5 Carica papaya HOM05D003547 ORTHO05D117506 5.2e-50 200.7 97 100.0
Cpa.g.sc29.7 Carica papaya HOM05D003547 ORTHO05D004236 1.3e-13 79.7 99 51.5
Thecc.06G017300 Theobroma cacao HOM05D003547 ORTHO05D004236 4.8e-11 71.2 99 45.5
THA.LOC104818214 Tarenaya hassleriana HOM05D003547 ORTHO05D004236 1.8e-10 69.3 101 41.6
MBI04_g02076_MAGBIO Magnolia biondii HOM05D003547 ORTHO05D004236 4.1e-10 68.2 102 45.1
MBI04_g45341_MAGBIO Magnolia biondii HOM05D003547 ORTHO05D004236 4.1e-10 68.2 102 45.1
AL1G23990 Arabidopsis lyrata HOM05D003547 ORTHO05D004236 6.9e-10 67.4 101 42.6
AL1G24100 Arabidopsis lyrata HOM05D003547 ORTHO05D004236 6.9e-10 67.4 101 42.6
CARHR012930 Cardamine hirsuta HOM05D003547 ORTHO05D004236 6.9e-10 67.4 101 41.6
PSO478G4332 Papaver somniferum HOM05D003547 ORTHO05D004236 6.9e-10 67.4 90 48.9
PSO782G0307 Papaver somniferum HOM05D003547 ORTHO05D004236 6.9e-10 67.4 90 48.9
CANSAT54G2270 Cannabis sativa HOM05D003547 ORTHO05D004236 9.0e-10 67.0 102 44.1
Gohir.A06G201800 Gossypium hirsutum HOM05D003547 ORTHO05D004236 9.0e-10 67.0 101 44.6
Gohir.D06G220000 Gossypium hirsutum HOM05D003547 ORTHO05D004236 9.0e-10 67.0 101 44.6
Gorai.010G246400 Gossypium raimondii HOM05D003547 ORTHO05D004236 9.0e-10 67.0 101 44.6
GSVIVG01019857001 Vitis vinifera HOM05D003547 ORTHO05D004236 9.0e-10 67.0 100 44.0
Duzib192G0273 Durio zibethinus HOM05D003547 ORTHO05D004236 1.2e-09 66.6 101 43.6
Cfa012105 Carpinus fangiana HOM05D003547 ORTHO05D004236 1.5e-09 66.2 102 44.1
Os02g0676000 Oryza sativa ssp. japonica HOM05D003547 ORTHO05D004236 1.5e-09 66.2 100 42.0
Aa31LG2G540 Aethionema arabicum HOM05D003547 ORTHO05D004236 2.6e-09 65.5 107 41.1
C09p18950 Brassica napus HOM05D003547 ORTHO05D004236 2.6e-09 65.5 101 39.6
BolC9t54799H Brassica oleracea HOM05D003547 ORTHO05D004236 2.6e-09 65.5 101 39.6
COL.COLO4_31135 Corchorus olitorius HOM05D003547 ORTHO05D004236 2.6e-09 65.5 108 40.7
Gorai.005G120200 Gossypium raimondii HOM05D003547 ORTHO05D004236 2.6e-09 65.5 100 40.0
HanXRQChr13g0416721 Helianthus annuus HOM05D003547 ORTHO05D004236 2.6e-09 65.5 101 42.6
Sp1g11230 Schrenkiella parvula HOM05D003547 ORTHO05D004236 2.6e-09 65.5 101 42.6
BcaB07g31380 Brassica carinata HOM05D003547 ORTHO05D004236 3.4e-09 65.1 101 38.6
Lj2A195T69 Lonicera japonica HOM05D003547 ORTHO05D004236 3.4e-09 65.1 100 39.0
AT1G12640 Arabidopsis thaliana HOM05D003547 ORTHO05D004236 4.5e-09 64.7 101 41.6
BcaC05g25124 Brassica carinata HOM05D003547 ORTHO05D004236 4.5e-09 64.7 101 41.6
BcaC05g25169 Brassica carinata HOM05D003547 ORTHO05D004236 4.5e-09 64.7 101 41.6
C05p10630 Brassica napus HOM05D003547 ORTHO05D004236 4.5e-09 64.7 101 41.6
BolC5t29805H Brassica oleracea HOM05D003547 ORTHO05D004236 4.5e-09 64.7 101 41.6
Duzib160G0880 Durio zibethinus HOM05D003547 ORTHO05D004236 4.5e-09 64.7 101 40.6
Sp2g01520 Schrenkiella parvula HOM05D003547 ORTHO05D004236 4.5e-09 64.7 101 39.6
Thhalv10007564m.g Eutrema salsugineum HOM05D003547 ORTHO05D004236 5.9e-09 64.3 101 41.6
Nitab4.5_0002886g0010 Nicotiana tabacum HOM05D003547 ORTHO05D004236 5.9e-09 64.3 102 44.1
A09p15710 Brassica napus HOM05D003547 ORTHO05D004236 7.6e-09 63.9 101 38.6
BraA09t37214Z Brassica rapa HOM05D003547 ORTHO05D004236 7.6e-09 63.9 101 38.6
HanXRQChr02g0048801 Helianthus annuus HOM05D003547 ORTHO05D004236 7.6e-09 63.9 98 39.8
Nn1g01365 Nelumbo nucifera HOM05D003547 ORTHO05D004236 7.6e-09 63.9 111 37.8
AT1G63050 Arabidopsis thaliana HOM05D003547 ORTHO05D004236 1.0e-08 63.5 101 38.6
A06p09030 Brassica napus HOM05D003547 ORTHO05D004236 1.0e-08 63.5 101 40.6
BraA06t24092Z Brassica rapa HOM05D003547 ORTHO05D004236 1.0e-08 63.5 101 40.6
Gohir.D02G105800 Gossypium hirsutum HOM05D003547 ORTHO05D004236 1.0e-08 63.5 99 39.4
Manes.02G027500 Manihot esculenta HOM05D003547 ORTHO05D004236 1.0e-08 63.5 100 42.0
Haze_08946 Corylus avellana HOM05D003547 ORTHO05D004236 1.3e-08 63.2 103 41.7
Sed0023323 Sechium edule HOM05D003547 ORTHO05D004236 1.3e-08 63.2 101 39.6
AL2G12540 Arabidopsis lyrata HOM05D003547 ORTHO05D004236 1.7e-08 62.8 101 37.6
Carub.0002s0195 Capsella rubella HOM05D003547 ORTHO05D004236 1.7e-08 62.8 101 37.6
Ciclev10020062m.g Citrus clementina HOM05D003547 ORTHO05D004236 1.7e-08 62.8 93 44.1
MD06G1073000 Malus domestica HOM05D003547 ORTHO05D004236 1.7e-08 62.8 93 43.0
TAR162G0002 Trochodendron aralioides HOM05D003547 ORTHO05D004236 1.7e-08 62.8 103 42.7
Carub.0001s1233 Capsella rubella HOM05D003547 ORTHO05D004236 2.2e-08 62.4 101 39.6
Gohir.A10G000050 Gossypium hirsutum HOM05D003547 ORTHO05D004236 2.2e-08 62.4 96 41.7
arahy.Tifrunner.gnm1.ann1.M5YJKY Arachis hypogaea HOM05D003547 ORTHO05D004236 2.9e-08 62.0 90 40.0
arahy.Tifrunner.gnm1.ann1.Z37SN9 Arachis hypogaea HOM05D003547 ORTHO05D004236 2.9e-08 62.0 90 40.0
CsaV3_3G003720 Cucumis sativus L. HOM05D003547 ORTHO05D004236 2.9e-08 62.0 101 39.6
Migut.E01295 Erythranthe guttata HOM05D003547 ORTHO05D004236 2.9e-08 62.0 100 43.0
Lsat_1_v5_gn_6_87800 Lactuca sativa HOM05D003547 ORTHO05D004236 2.9e-08 62.0 98 38.8
Peaxi162Scf00102g01431 Petunia axillaris HOM05D003547 ORTHO05D004236 2.9e-08 62.0 98 42.9
TWI15G0596 Tripterygium wilfordii HOM05D003547 ORTHO05D004236 2.9e-08 62.0 102 40.2
TWI60G0357 Tripterygium wilfordii HOM05D003547 ORTHO05D004236 2.9e-08 62.0 102 40.2
TAR629G0482 Trochodendron aralioides HOM05D003547 ORTHO05D004236 2.9e-08 62.0 93 40.9
Dinv37691 Davidia involucrata HOM05D003547 ORTHO05D004236 3.8e-08 61.6 101 37.6
Duzib160G0138 Durio zibethinus HOM05D003547 ORTHO05D004236 3.8e-08 61.6 101 41.6
HPP92_002471 Vanilla planifolia HOM05D003547 ORTHO05D004236 3.8e-08 61.6 109 40.4
FvH4_5g01510 Fragaria vesca HOM05D003547 ORTHO05D004236 5.0e-08 61.2 93 43.0
FAN04G0150 Fragaria x ananassa HOM05D003547 ORTHO05D004236 5.0e-08 61.2 93 43.0
FAN13G0583 Fragaria x ananassa HOM05D003547 ORTHO05D004236 5.0e-08 61.2 93 43.0
FAN18G3487 Fragaria x ananassa HOM05D003547 ORTHO05D004236 5.0e-08 61.2 93 43.0
Sopen08g003790 Solanum pennellii HOM05D003547 ORTHO05D004236 5.0e-08 61.2 91 44.0
Atru.chr9.1544 Acer truncatum HOM05D003547 ORTHO05D004236 6.5e-08 60.8 102 41.2
ClCG00G000880 Citrullus lanatus HOM05D003547 ORTHO05D004236 6.5e-08 60.8 102 39.2
ClCG00G003630 Citrullus lanatus HOM05D003547 ORTHO05D004236 6.5e-08 60.8 102 39.2
ClCG10G003720 Citrullus lanatus HOM05D003547 ORTHO05D004236 6.5e-08 60.8 102 39.2
MELO3C014054.2 Cucumis melo HOM05D003547 ORTHO05D004236 6.5e-08 60.8 101 39.6
Thhalv10023446m.g Eutrema salsugineum HOM05D003547 ORTHO05D004236 6.5e-08 60.8 101 38.6
PGSC0003DMG400012528 Solanum tuberosum HOM05D003547 ORTHO05D004236 6.5e-08 60.8 91 42.9
CDE11G0458 Ceratophyllum demersum HOM05D003547 ORTHO05D004236 8.5e-08 60.5 89 47.2
Lalb_Chr05g0225061 Lupinus albus HOM05D003547 ORTHO05D004236 8.5e-08 60.5 90 42.2
Nitab4.5_0001200g0130 Nicotiana tabacum HOM05D003547 ORTHO05D004236 8.5e-08 60.5 100 43.0
BcaC04g22467 Brassica carinata HOM05D003547 ORTHO05D004236 1.1e-07 60.1 96 38.5
CiPaw.11G141000 Carya illinoinensis HOM05D003547 ORTHO05D004236 1.1e-07 60.1 99 40.4
THA.LOC104823570 Tarenaya hassleriana HOM05D003547 ORTHO05D004236 1.1e-07 60.1 96 39.6
Zm00001eb250480 Zea mays HOM05D003547 ORTHO05D004236 1.1e-07 60.1 91 41.8
CAN.G26.30 Capsicum annuum HOM05D003547 ORTHO05D004236 1.4e-07 59.7 90 42.2
Actinidia05228 Actinidia chinensis HOM05D003547 ORTHO05D004236 1.9e-07 59.3 93 40.9
ECA233G1009 Erigeron canadensis HOM05D003547 ORTHO05D004236 1.9e-07 59.3 96 38.5
Sed0008694 Sechium edule HOM05D003547 ORTHO05D004236 1.9e-07 59.3 101 38.6
PGSC0003DMG400004256 Solanum tuberosum HOM05D003547 ORTHO05D004236 1.9e-07 59.3 101 40.6
Ca_20247_v3 Cicer arietinum L. HOM05D003547 ORTHO05D004236 2.5e-07 58.9 93 40.9
FAN08G0461 Fragaria x ananassa HOM05D003547 ORTHO05D004236 2.5e-07 58.9 93 41.9
Phvul.003G212400 Phaseolus vulgaris HOM05D003547 ORTHO05D004236 2.5e-07 58.9 93 43.0
Prupe.5G091400 Prunus persica HOM05D003547 ORTHO05D004236 2.5e-07 58.9 93 44.1
Solyc08g007860.4 Solanum lycopersicum HOM05D003547 ORTHO05D004236 2.5e-07 58.9 91 42.9
SGA_v2.0_scaffold343G49466 Striga asiatica HOM05D003547 ORTHO05D004236 2.5e-07 58.9 91 41.8
CSS0039885 Camellia sinensis var. sinensis HOM05D003547 ORTHO05D004236 3.2e-07 58.5 104 38.5
CiPaw.12G098000 Carya illinoinensis HOM05D003547 ORTHO05D004236 3.2e-07 58.5 90 44.4
CARHR048570 Cardamine hirsuta HOM05D003547 ORTHO05D004236 4.2e-07 58.2 101 35.6
Solyc08g080340.3 Solanum lycopersicum HOM05D003547 ORTHO05D004236 4.2e-07 58.2 91 42.9
Sopen08g028680 Solanum pennellii HOM05D003547 ORTHO05D004236 4.2e-07 58.2 91 44.0
PGSC0003DMG400022761 Solanum tuberosum HOM05D003547 ORTHO05D004236 4.2e-07 58.2 91 44.0
Actinidia14524 Actinidia chinensis HOM05D003547 ORTHO05D004236 5.5e-07 57.8 93 43.0
MSTRG.25577 Avicennia marina HOM05D003547 ORTHO05D004236 5.5e-07 57.8 91 39.6
Oeu062362.1 Olea europaea HOM05D003547 ORTHO05D004236 5.5e-07 57.8 91 38.5
SalBow1G4609 Salvia bowleyana HOM05D003547 ORTHO05D004236 5.5e-07 57.8 100 41.0
Solyc12g056420.2 Solanum lycopersicum HOM05D003547 ORTHO05D004236 5.5e-07 57.8 100 40.0
Sopen12g029010 Solanum pennellii HOM05D003547 ORTHO05D004236 5.5e-07 57.8 100 40.0
CAN.G981.33 Capsicum annuum HOM05D003547 ORTHO05D004236 7.2e-07 57.4 91 42.9
Nitab4.5_0002234g0080 Nicotiana tabacum HOM05D003547 ORTHO05D004236 7.2e-07 57.4 91 40.7
Nitab4.5_0002853g0090 Nicotiana tabacum HOM05D003547 ORTHO05D004236 7.2e-07 57.4 91 40.7
ATR0757G074 Amborella trichopoda HOM05D003547 ORTHO05D004236 9.3e-07 57.0 93 39.8
Aqoxy7G00440 Aquilegia oxysepala HOM05D003547 ORTHO05D004236 9.3e-07 57.0 93 40.9
Migut.A00924 Erythranthe guttata HOM05D003547 ORTHO05D004236 9.3e-07 57.0 91 41.8
MD04G1067300 Malus domestica HOM05D003547 ORTHO05D004236 9.3e-07 57.0 93 39.8
SGA_v2.0_scaffold286G47093 Striga asiatica HOM05D003547 ORTHO05D004236 9.3e-07 57.0 91 38.5
AUR62016028 Chenopodium quinoa HOM05D003547 ORTHO05D004236 1.2e-06 56.6 91 40.7
Lj8A238G58 Lonicera japonica HOM05D003547 ORTHO05D004236 1.2e-06 56.6 102 39.2
RcHm_v2.0_Chr7g0199181 Rosa chinensis HOM05D003547 ORTHO05D004236 1.6e-06 56.2 93 39.8
VMungo1215G1357 Vigna mungo HOM05D003547 ORTHO05D004236 1.6e-06 56.2 90 43.3
MSTRG.1894 Avicennia marina HOM05D003547 ORTHO05D004236 2.1e-06 55.8 91 39.6
Cc08_g14010 Coffea canephora HOM05D003547 ORTHO05D004236 2.1e-06 55.8 100 39.0
Hma1.2p1_0514F.1_g170080 Hydrangea macrophylla HOM05D003547 ORTHO05D004236 2.1e-06 55.8 93 38.7
Sc13g0008440 Simmondsia chinensis HOM05D003547 ORTHO05D004236 2.1e-06 55.8 91 38.5
unitig_22.g5475 Utricularia gibba HOM05D003547 ORTHO05D004236 2.7e-06 55.5 91 40.7
arahy.Tifrunner.gnm1.ann1.BX3ZCH Arachis hypogaea HOM05D003547 ORTHO05D004236 4.6e-06 54.7 82 39.0
Potri.003G121700 Populus trichocarpa HOM05D003547 ORTHO05D004236 4.6e-06 54.7 102 39.2
Potri.001G110100 Populus trichocarpa HOM05D003547 ORTHO05D004236 6.1e-06 54.3 102 40.2
PGR042G3585 Punica granatum HOM05D003547 ORTHO05D004236 6.1e-06 54.3 41 70.7
EL10Ac3g05697 Beta vulgaris HOM05D003547 ORTHO05D004236 7.9e-06 53.9 91 39.6
Peaxi162Scf00714g00618 Petunia axillaris HOM05D003547 ORTHO05D004236 7.9e-06 53.9 91 37.4


User provided reference genes

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