Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc29.43 Carica papaya HOM05D006448 ORTHO05D002680 8.2e-120 433.7 217 100.0
Thecc.03G266800 Theobroma cacao HOM05D006448 ORTHO05D002680 9.6e-44 181.0 171 57.3
Duzib068G0812 Durio zibethinus HOM05D006448 ORTHO05D002680 1.6e-43 180.3 173 56.6
QL12p016251 Quercus lobata HOM05D006448 ORTHO05D002680 1.2e-41 174.1 174 59.2
CiPaw.11G143600 Carya illinoinensis HOM05D006448 ORTHO05D002680 5.8e-41 171.8 174 56.3
Potri.003G118900 Populus trichocarpa HOM05D006448 ORTHO05D002680 2.9e-40 169.5 189 51.9
Gohir.A12G223300 Gossypium hirsutum HOM05D006448 ORTHO05D002680 4.9e-40 168.7 170 52.4
Gorai.008G241900 Gossypium raimondii HOM05D006448 ORTHO05D002680 1.9e-39 166.8 170 51.8
COL.COLO4_23809 Corchorus olitorius HOM05D006448 ORTHO05D002680 2.4e-39 166.4 175 56.6
GSVIVG01019896001 Vitis vinifera HOM05D006448 ORTHO05D002680 4.2e-39 165.6 179 53.1
Prupe.5G086200 Prunus persica HOM05D006448 ORTHO05D002680 5.5e-39 165.2 174 55.7
Atru.chr9.1494 Acer truncatum HOM05D006448 ORTHO05D002680 9.3e-39 164.5 173 53.2
Gohir.D12G225900 Gossypium hirsutum HOM05D006448 ORTHO05D002680 1.8e-37 160.2 170 50.0
Sabra03G0082800 Salix brachista HOM05D006448 ORTHO05D002680 1.8e-37 160.2 173 52.0
Manes.02G029300 Manihot esculenta HOM05D006448 ORTHO05D002680 3.0e-37 159.5 175 54.3
Duzib205G1269 Durio zibethinus HOM05D006448 ORTHO05D002680 6.7e-37 158.3 171 52.6
MD06G1069000 Malus domestica HOM05D006448 ORTHO05D002680 1.6e-35 153.7 173 50.9
Actinidia05239 Actinidia chinensis HOM05D006448 ORTHO05D002680 6.2e-35 151.8 171 53.8
Ciclev10021958m.g Citrus clementina HOM05D006448 ORTHO05D002680 6.2e-35 151.8 173 50.3
Phvul.003G214000 Phaseolus vulgaris HOM05D006448 ORTHO05D002680 1.1e-34 151.0 189 49.2
Haze_08995 Corylus avellana HOM05D006448 ORTHO05D002680 3.1e-34 149.4 169 52.7
VMungo1215G1707 Vigna mungo HOM05D006448 ORTHO05D002680 3.1e-34 149.4 190 50.5
Hma1.2p1_0371F.1_g138330 Hydrangea macrophylla HOM05D006448 ORTHO05D002680 6.9e-34 148.3 171 50.9
TAR636G1330 Trochodendron aralioides HOM05D006448 ORTHO05D002680 1.5e-33 147.1 177 49.2
Cfa012062 Carpinus fangiana HOM05D006448 ORTHO05D009463 1.0e-32 144.4 171 50.3
Glyma.17G133300 Glycine max HOM05D006448 ORTHO05D002680 2.9e-32 142.9 171 52.6
CSS0026776 Camellia sinensis var. sinensis HOM05D006448 ORTHO05D002680 3.8e-32 142.5 171 50.9
vmacro14018 Vaccinium macrocarpon HOM05D006448 ORTHO05D002680 5.5e-31 138.7 171 50.9
TWI81G0076 Tripterygium wilfordii HOM05D006448 ORTHO05D002680 1.6e-30 137.1 171 47.4
Ca_12274_v3 Cicer arietinum L. HOM05D006448 ORTHO05D002680 2.1e-30 136.7 191 48.2
ClCG00G000140 Citrullus lanatus HOM05D006448 ORTHO05D002680 4.6e-30 135.6 181 45.9
Rhsim07G0096800 Rhododendron simsii HOM05D006448 ORTHO05D002680 4.6e-30 135.6 173 50.3
ClCG10G003390 Citrullus lanatus HOM05D006448 ORTHO05D002680 1.0e-29 134.4 181 45.3
Lalb_Chr16g0389691 Lupinus albus HOM05D006448 ORTHO05D002680 1.3e-29 134.0 179 48.6
arahy.Tifrunner.gnm1.ann1.715XQU Arachis hypogaea HOM05D006448 ORTHO05D002680 2.3e-29 133.3 177 48.0
arahy.Tifrunner.gnm1.ann1.AG2E5P Arachis hypogaea HOM05D006448 ORTHO05D002680 2.3e-29 133.3 174 47.1
Dinv39041 Davidia involucrata HOM05D006448 ORTHO05D002680 5.1e-29 132.1 143 55.9
FAN18G1104 Fragaria x ananassa HOM05D006448 ORTHO05D002680 5.1e-29 132.1 170 50.0
FvH4_5g01130 Fragaria vesca HOM05D006448 ORTHO05D002680 8.7e-29 131.3 170 49.4
MELO3C014008.2 Cucumis melo HOM05D006448 ORTHO05D002680 1.5e-28 130.6 175 45.1
FAN08G3645 Fragaria x ananassa HOM05D006448 ORTHO05D002680 1.5e-28 130.6 173 48.0
Sed0023863 Sechium edule HOM05D006448 ORTHO05D002680 1.9e-28 130.2 177 44.6
CsaV3_3G003420 Cucumis sativus L. HOM05D006448 ORTHO05D002680 7.4e-28 128.3 180 46.1
Sc01g0008960 Simmondsia chinensis HOM05D006448 ORTHO05D002680 1.3e-27 127.5 180 47.2
DCAR_000888 Daucus carota HOM05D006448 ORTHO05D002680 6.3e-27 125.2 172 43.6
SGA_v2.0_scaffold144G35983 Striga asiatica HOM05D006448 ORTHO05D002680 8.2e-27 124.8 173 43.9
Oeu048758.1 Olea europaea HOM05D006448 ORTHO05D002680 1.4e-26 124.0 174 44.8
FAN13G1673 Fragaria x ananassa HOM05D006448 ORTHO05D002680 1.2e-25 120.9 173 46.2
PGSC0003DMG400012519 Solanum tuberosum HOM05D006448 ORTHO05D002680 1.2e-25 120.9 179 45.3
RcHm_v2.0_Chr7g0200011 Rosa chinensis HOM05D006448 ORTHO05D002680 2.0e-25 120.2 173 45.7
Nn1g01151 Nelumbo nucifera HOM05D006448 ORTHO05D002680 4.5e-25 119.0 172 46.5
TPR.G37667 Trifolium pratense HOM05D006448 ORTHO05D002680 7.6e-25 118.2 174 46.0
Psat0s302g0320 Pisum sativum HOM05D006448 ORTHO05D002680 1.3e-24 117.5 190 45.3
SalBow1G7747 Salvia bowleyana HOM05D006448 ORTHO05D002680 1.7e-24 117.1 174 45.4
Medtr4g102360 Medicago truncatula HOM05D006448 ORTHO05D002680 2.9e-24 116.3 190 42.6
RcHm_v2.0_Chr7g0200111 Rosa chinensis HOM05D006448 ORTHO05D002680 3.8e-24 115.9 173 44.5
Lj2A203T53 Lonicera japonica HOM05D006448 ORTHO05D002680 6.5e-24 115.2 192 39.6
Migut.E01024 Erythranthe guttata HOM05D006448 ORTHO05D002680 8.5e-24 114.8 171 41.5
Lj4g0004914 Lotus japonicus HOM05D006448 ORTHO05D002680 8.5e-24 114.8 164 45.7
MSTRG.13803 Avicennia marina HOM05D006448 ORTHO05D002680 1.1e-23 114.4 176 39.8
PGR031G0652 Punica granatum HOM05D006448 ORTHO05D002680 7.2e-23 111.7 173 42.8
Nn6g34344 Nelumbo nucifera HOM05D006448 ORTHO05D002680 1.2e-22 110.9 177 41.8
CANSAT21G2080 Cannabis sativa HOM05D006448 ORTHO05D002680 2.1e-22 110.2 174 42.0
Solyc08g007710.3 Solanum lycopersicum HOM05D006448 ORTHO05D002680 2.1e-22 110.2 179 43.0
EL10Ac5g12676 Beta vulgaris HOM05D006448 ORTHO05D002680 2.7e-22 109.8 178 40.4
Eucgr.J01659 Eucalyptus grandis HOM05D006448 ORTHO05D002680 2.7e-22 109.8 174 40.8
Peaxi162Scf00102g01347 Petunia axillaris HOM05D006448 ORTHO05D002680 2.7e-22 109.8 197 38.1
PSO478G1059 Papaver somniferum HOM05D006448 ORTHO05D002680 4.6e-22 109.0 170 40.6
PSO782G5251 Papaver somniferum HOM05D006448 ORTHO05D002680 1.3e-21 107.5 170 40.0
Sopen08g003660 Solanum pennellii HOM05D006448 ORTHO05D002680 3.9e-21 105.9 179 41.9
Ah.12g057920 Amaranthus hybridus HOM05D006448 ORTHO05D002680 1.9e-20 103.6 178 39.3
MBI15_g31037_MAGBIO Magnolia biondii HOM05D006448 ORTHO05D002680 9.7e-20 101.3 171 40.9
Nitab4.5_0002886g0060 Nicotiana tabacum HOM05D006448 ORTHO05D002680 1.3e-19 100.9 194 38.1
Hund11545 Selenicereus undatus HOM05D006448 ORTHO05D002680 1.6e-19 100.5 169 43.2
AUR62017339 Chenopodium quinoa HOM05D006448 ORTHO05D002680 2.2e-19 100.1 192 38.0
Cc08_g13670 Coffea canephora HOM05D006448 ORTHO05D002680 8.2e-19 98.2 177 39.5
Nitab4.5_0001200g0020 Nicotiana tabacum HOM05D006448 ORTHO05D002680 4.1e-18 95.9 188 37.8
THA.LOC104818276 Tarenaya hassleriana HOM05D006448 ORTHO05D002680 1.2e-17 94.4 182 39.6
Aqoxy7G00522 Aquilegia oxysepala HOM05D006448 ORTHO05D002680 4.5e-17 92.4 161 36.0
AUR62010553 Chenopodium quinoa HOM05D006448 ORTHO05D002680 8.5e-16 88.2 130 42.3
Actinidia27419 Actinidia chinensis HOM05D006448 ORTHO05D002680 5.5e-15 85.5 93 53.8
Carub.0001s1222 Capsella rubella HOM05D006448 ORTHO05D002680 2.7e-14 83.2 126 46.8
ECA246G2245 Erigeron canadensis HOM05D006448 ORTHO05D002680 4.6e-14 82.4 173 36.4
CARHR012820 Cardamine hirsuta HOM05D006448 ORTHO05D002680 6.7e-13 78.6 107 47.7
AL1G23880 Arabidopsis lyrata HOM05D006448 ORTHO05D002680 4.4e-12 75.9 126 42.9
BcaB08g34272 Brassica carinata HOM05D005378 ORTHO05D006986 4.4e-12 75.9 124 42.7
BcaC07g41696 Brassica carinata HOM05D005378 ORTHO05D006986 5.7e-12 75.5 70 60.0
BolC8t52273H Brassica oleracea HOM05D006448 ORTHO05D002680 5.7e-12 75.5 70 60.0
BcaC05g25182 Brassica carinata HOM05D006448 ORTHO05D002680 9.7e-12 74.7 147 40.8
C05p10710 Brassica napus HOM05D006448 ORTHO05D002680 9.7e-12 74.7 147 40.8
C08p47310 Brassica napus HOM05D006448 ORTHO05D002680 9.7e-12 74.7 70 58.6
BolC5t29812H Brassica oleracea HOM05D006448 ORTHO05D002680 2.2e-11 73.6 170 37.1
Sp1g11110 Schrenkiella parvula HOM05D006448 ORTHO05D002680 2.2e-11 73.6 193 34.2
BolC4t24474H Brassica oleracea HOM05D006448 ORTHO05D002680 3.7e-11 72.8 50 72.0
BraA09t41728Z Brassica rapa HOM05D005378 ORTHO05D006986 3.7e-11 72.8 50 72.0
AT1G12530 Arabidopsis thaliana HOM05D006448 ORTHO05D002680 2.4e-10 70.1 69 58.0
A06p09120 Brassica napus HOM05D006448 ORTHO05D002680 3.1e-10 69.7 124 38.7
A09p63810 Brassica napus HOM05D006448 ORTHO05D002680 4.1e-10 69.3 149 36.9
SHI09613 Sapria himalayana HOM05D006448 ORTHO05D002680 9.1e-10 68.2 172 33.1
CDE07G0633 Ceratophyllum demersum HOM05D006448 ORTHO05D002680 1.2e-09 67.8 194 30.4
Thhalv10008831m.g Eutrema salsugineum HOM05D006448 ORTHO05D002680 1.2e-09 67.8 81 51.9
Lsat_1_v5_gn_3_4580 Lactuca sativa HOM05D006448 ORTHO05D002680 2.0e-09 67.0 173 32.4
BcaC05g25135 Brassica carinata HOM05D006448 ORTHO05D002680 5.9e-09 65.5 43 74.4
Aa31LG1G2120 Aethionema arabicum HOM05D006448 ORTHO05D002680 1.3e-08 64.3 89 46.1
CDE06G1182 Ceratophyllum demersum HOM05D006448 ORTHO05D002680 1.3e-08 64.3 194 29.9
C05p41670 Brassica napus HOM05D006448 ORTHO05D002680 1.7e-08 63.9 64 53.1
BolC5t32903H Brassica oleracea HOM05D006448 ORTHO05D002680 1.7e-08 63.9 64 53.1
BcaC05g28136 Brassica carinata HOM05D006448 ORTHO05D002680 1.4e-07 60.8 62 53.2
ATR0661G558 Amborella trichopoda HOM05D006448 ORTHO05D002680 1.9e-07 60.5 177 28.8
HPP92_006037 Vanilla planifolia HOM05D006448 ORTHO05D002680 9.4e-07 58.2 203 26.6
Os03g0228500 Oryza sativa ssp. japonica HOM05D006448 ORTHO05D002680 1.6e-06 57.4 175 28.0
RcHm_v2.0_Chr7g0224151 Rosa chinensis HOM05D006448 ORTHO05D002680 4.7e-06 55.8 42 66.7


User provided reference genes

Program Settings