Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc29.33 Carica papaya HOM05D003389 ORTHO05D003917 2.4e-96 355.5 180 100.0
arahy.Tifrunner.gnm1.ann1.18T4MA Arachis hypogaea HOM05D003389 ORTHO05D003917 4.1e-72 275.0 141 95.0
arahy.Tifrunner.gnm1.ann1.HGX6IC Arachis hypogaea HOM05D003389 ORTHO05D003917 4.1e-72 275.0 141 95.0
CiPaw.12G100200 Carya illinoinensis HOM05D003389 ORTHO05D003917 4.1e-72 275.0 160 89.4
Manes.02G030300 Manihot esculenta HOM05D003389 ORTHO05D003917 6.9e-72 274.2 160 86.2
Ciclev10019075m.g Citrus clementina HOM05D003389 ORTHO05D003917 1.5e-71 273.1 148 89.9
Duzib068G0926 Durio zibethinus HOM05D003389 ORTHO05D003917 2.6e-71 272.3 169 82.8
Glyma.01G214700 Glycine max HOM05D003389 ORTHO05D003917 5.9e-71 271.2 167 85.6
Duzib084G0706 Durio zibethinus HOM05D003389 ORTHO05D003917 1.0e-70 270.4 154 85.7
Atru.chr9.1507 Acer truncatum HOM05D003389 ORTHO05D003917 1.3e-70 270.0 149 89.9
Thecc.03G268500 Theobroma cacao HOM05D003389 ORTHO05D003917 1.3e-70 270.0 141 92.9
Gohir.A09G193500 Gossypium hirsutum HOM05D003389 ORTHO05D003917 1.7e-70 269.6 158 84.8
Gorai.006G210500 Gossypium raimondii HOM05D003389 ORTHO05D003917 1.7e-70 269.6 151 88.1
VMungo1215G1985 Vigna mungo HOM05D003389 ORTHO05D003917 1.7e-70 269.6 164 86.0
Gohir.D09G187700 Gossypium hirsutum HOM05D003389 ORTHO05D003917 2.2e-70 269.2 154 86.4
Duzib205G0992 Durio zibethinus HOM05D003389 ORTHO05D003917 2.9e-70 268.9 141 92.2
Gohir.A08G177400 Gossypium hirsutum HOM05D003389 ORTHO05D003917 2.9e-70 268.9 165 81.8
CiPaw.11G142600 Carya illinoinensis HOM05D003389 ORTHO05D003917 6.5e-70 267.7 154 86.4
Gohir.D08G195800 Gossypium hirsutum HOM05D003389 ORTHO05D003917 6.5e-70 267.7 165 81.2
Gorai.004G206500 Gossypium raimondii HOM05D003389 ORTHO05D003917 1.1e-69 266.9 165 81.2
MD06G1071400 Malus domestica HOM05D003389 ORTHO05D003917 1.1e-69 266.9 143 90.9
Phvul.002G153200 Phaseolus vulgaris HOM05D003389 ORTHO05D003917 1.1e-69 266.9 169 82.8
PGR031G2775 Punica granatum HOM05D003389 ORTHO05D003917 1.1e-69 266.9 138 93.5
CANSAT21G1884 Cannabis sativa HOM05D003389 ORTHO05D003917 1.4e-69 266.5 155 86.5
TWI81G0612 Tripterygium wilfordii HOM05D003389 ORTHO05D003917 1.4e-69 266.5 139 94.2
TWI15G1193 Tripterygium wilfordii HOM05D003389 ORTHO05D003917 1.9e-69 266.2 139 93.5
CSS0021110 Camellia sinensis var. sinensis HOM05D003389 ORTHO05D003917 2.5e-69 265.8 155 87.1
Lj2g0004762 Lotus japonicus HOM05D003389 ORTHO05D003917 2.5e-69 265.8 165 83.0
MD04G1069900 Malus domestica HOM05D003389 ORTHO05D003917 3.2e-69 265.4 143 90.9
Manes.01G069600 Manihot esculenta HOM05D003389 ORTHO05D003917 3.2e-69 265.4 158 84.2
Potri.001G112300 Populus trichocarpa HOM05D003389 ORTHO05D003917 4.2e-69 265.0 162 83.3
QL12p016621 Quercus lobata HOM05D003389 ORTHO05D003917 5.5e-69 264.6 141 91.5
Cfa012079 Carpinus fangiana HOM05D003389 ORTHO05D003917 7.2e-69 264.2 155 87.7
Lalb_Chr09g0324691 Lupinus albus HOM05D003389 ORTHO05D003917 7.2e-69 264.2 141 92.2
Sabra01G0085800 Salix brachista HOM05D003389 ORTHO05D003917 7.2e-69 264.2 148 87.2
Dinv37703 Davidia involucrata HOM05D003389 ORTHO05D003917 1.6e-68 263.1 155 87.1
Dinv39033 Davidia involucrata HOM05D003389 ORTHO05D003917 1.6e-68 263.1 155 87.1
Glyma.11G027200 Glycine max HOM05D003389 ORTHO05D003917 2.1e-68 262.7 139 94.2
RcHm_v2.0_Chr7g0199771 Rosa chinensis HOM05D003389 ORTHO05D003917 2.7e-68 262.3 160 83.8
Gorai.007G022100 Gossypium raimondii HOM05D003389 ORTHO05D003917 3.6e-68 261.9 166 81.9
Peaxi162Scf00620g00617 Petunia axillaris HOM05D003389 ORTHO05D003917 3.6e-68 261.9 157 85.4
Sopen08g028470 Solanum pennellii HOM05D003389 ORTHO05D003917 3.6e-68 261.9 159 84.9
PGSC0003DMG400022735 Solanum tuberosum HOM05D003389 ORTHO05D003917 1.0e-67 260.4 159 84.3
Ca_06667_v3 Cicer arietinum L. HOM05D003389 ORTHO05D003917 1.3e-67 260.0 144 89.6
Nitab4.5_0008362g0010 Nicotiana tabacum HOM05D003389 ORTHO05D003917 1.3e-67 260.0 157 82.8
Gohir.A11G021100 Gossypium hirsutum HOM05D003389 ORTHO05D003917 1.8e-67 259.6 161 83.9
Sed0009929 Sechium edule HOM05D003389 ORTHO05D003917 1.8e-67 259.6 165 80.0
Potri.003G119800 Populus trichocarpa HOM05D003389 ORTHO05D003917 5.1e-67 258.1 138 92.0
CsaV3_5G003350 Cucumis sativus L. HOM05D003389 ORTHO05D003917 6.7e-67 257.7 172 79.7
FvH4_5g01250 Fragaria vesca HOM05D003389 ORTHO05D003917 6.7e-67 257.7 142 89.4
FAN04G3242 Fragaria x ananassa HOM05D003389 ORTHO05D003917 6.7e-67 257.7 142 89.4
FAN08G2451 Fragaria x ananassa HOM05D003389 ORTHO05D003917 6.7e-67 257.7 142 89.4
FAN13G0159 Fragaria x ananassa HOM05D003389 ORTHO05D003917 6.7e-67 257.7 142 89.4
Sed0023838 Sechium edule HOM05D003389 ORTHO05D003917 8.7e-67 257.3 162 81.5
Sabra03G0084000 Salix brachista HOM05D003389 ORTHO05D003917 1.1e-66 256.9 165 80.0
GSVIVG01019881001 Vitis vinifera HOM05D003389 ORTHO05D003917 1.1e-66 256.9 153 81.7
Prupe.5G088000 Prunus persica HOM05D003389 ORTHO05D003917 1.5e-66 256.5 139 89.9
Lsat_1_v5_gn_6_10400 Lactuca sativa HOM05D003389 ORTHO05D003917 1.9e-66 256.1 158 81.6
FAN18G0817 Fragaria x ananassa HOM05D003389 ORTHO05D003917 4.3e-66 255.0 160 81.2
Oeu001902.1 Olea europaea HOM05D003389 ORTHO05D003917 7.4e-66 254.2 150 82.7
CAN.G981.56 Capsicum annuum HOM05D003389 ORTHO05D003917 1.3e-65 253.4 138 90.6
Aa31LG9G10590 Aethionema arabicum HOM05D003389 ORTHO05D003917 1.6e-65 253.1 163 78.5
Nn1g01292 Nelumbo nucifera HOM05D003389 ORTHO05D003917 1.6e-65 253.1 148 84.5
Actinidia05234 Actinidia chinensis HOM05D003389 ORTHO05D003917 2.2e-65 252.7 155 82.6
SalBow6G3358 Salvia bowleyana HOM05D003389 ORTHO05D003917 2.8e-65 252.3 165 78.2
Psat2g181120 Pisum sativum HOM05D003389 ORTHO05D003917 4.8e-65 251.5 143 88.1
Migut.E01161 Erythranthe guttata HOM05D003389 ORTHO05D003917 6.3e-65 251.1 147 85.0
Gohir.D11G020800 Gossypium hirsutum HOM05D003389 ORTHO05D003917 6.3e-65 251.1 172 77.3
Medtr5g011090 Medicago truncatula HOM05D003389 ORTHO05D003917 6.3e-65 251.1 156 83.3
SGA_v2.0_scaffold286G47125 Striga asiatica HOM05D003389 ORTHO05D003917 8.2e-65 250.8 160 80.0
Sc07g0009480 Simmondsia chinensis HOM05D003389 ORTHO05D003917 1.1e-64 250.4 135 89.6
HanXRQChr11g0336621 Helianthus annuus HOM05D003389 ORTHO05D003917 1.4e-64 250.0 147 83.7
Nn6g34315 Nelumbo nucifera HOM05D003389 ORTHO05D003917 1.4e-64 250.0 148 84.5
TAR636G1874 Trochodendron aralioides HOM05D003389 ORTHO05D003917 1.4e-64 250.0 148 82.4
Cc08_g13790 Coffea canephora HOM05D003389 ORTHO05D003917 1.8e-64 249.6 160 80.6
AT4G11860 Arabidopsis thaliana HOM05D003389 ORTHO05D003917 2.4e-64 249.2 171 74.9
THA.LOC104814202 Tarenaya hassleriana HOM05D003389 ORTHO05D003917 4.1e-64 248.4 164 76.8
ECA233G2019 Erigeron canadensis HOM05D003389 ORTHO05D003917 6.9e-64 247.7 152 80.3
Carub.0006s3095 Capsella rubella HOM05D003389 ORTHO05D003917 1.5e-63 246.5 138 85.5
Hund14708 Selenicereus undatus HOM05D003389 ORTHO05D003917 4.5e-63 245.0 156 79.5
CARHR254440 Cardamine hirsuta HOM05D003389 ORTHO05D003917 5.9e-63 244.6 151 78.1
Hund11535 Selenicereus undatus HOM05D003389 ORTHO05D003917 5.9e-63 244.6 139 86.3
EL10Ac5g12710 Beta vulgaris HOM05D003389 ORTHO05D003917 7.7e-63 244.2 155 79.4
Ah.12g057800 Amaranthus hybridus HOM05D003389 ORTHO05D003917 1.0e-62 243.8 155 79.4
PSO478G1498 Papaver somniferum HOM05D003389 ORTHO05D003917 6.5e-62 241.1 148 79.1
PSO782G1906 Papaver somniferum HOM05D003389 ORTHO05D003917 6.5e-62 241.1 148 79.1
Thhalv10028490m.g Eutrema salsugineum HOM05D003389 ORTHO05D003917 8.5e-62 240.7 164 74.4
Sp6g05610 Schrenkiella parvula HOM05D003389 ORTHO05D003917 8.5e-62 240.7 141 81.6
THA.LOC104806361 Tarenaya hassleriana HOM05D003389 ORTHO05D003917 8.5e-62 240.7 151 78.8
SGA_v2.0_scaffold144G35980 Striga asiatica HOM05D003389 ORTHO05D003917 1.4e-61 240.0 165 76.4
ECA240G1577 Erigeron canadensis HOM05D003389 ORTHO05D003917 2.5e-61 239.2 147 81.0
BcaB01g01683 Brassica carinata HOM05D003389 ORTHO05D003917 1.2e-60 236.9 162 73.5
AUR62017315 Chenopodium quinoa HOM05D003389 ORTHO05D003917 7.9e-60 234.2 135 83.0
CDE04G0877 Ceratophyllum demersum HOM05D003389 ORTHO05D003917 1.8e-59 233.0 149 75.8
BcaC04g21168 Brassica carinata HOM05D003389 ORTHO05D003917 3.0e-59 232.3 167 71.9
C09p34580 Brassica napus HOM05D003389 ORTHO05D003917 3.0e-59 232.3 167 71.9
BolC9t56305H Brassica oleracea HOM05D003389 ORTHO05D003917 3.0e-59 232.3 167 71.9
BraA09t38293Z Brassica rapa HOM05D003389 ORTHO05D003917 3.0e-59 232.3 165 71.5
AUR62010575 Chenopodium quinoa HOM05D003389 ORTHO05D003917 3.0e-59 232.3 135 83.0
Lsat_1_v5_gn_6_79100 Lactuca sativa HOM05D003389 ORTHO05D003917 3.0e-59 232.3 165 72.7
SalBow1G6995 Salvia bowleyana HOM05D003262 ORTHO05D003917 3.9e-59 231.9 160 74.4
A09p27250 Brassica napus HOM05D003389 ORTHO05D003917 5.1e-59 231.5 170 70.0
unitig_699.g19759 Utricularia gibba HOM05D003389 ORTHO05D003917 3.3e-58 228.8 165 70.9
MBI11_g05095_MAGBIO Magnolia biondii HOM05D003389 ORTHO05D003917 3.1e-56 222.2 147 76.9
HPP92_022000 Vanilla planifolia HOM05D003389 ORTHO05D003917 3.1e-56 222.2 146 75.3
CSS0044016 Camellia sinensis var. sinensis HOM05D003389 ORTHO05D003917 1.2e-55 220.3 146 78.1
SHI13491 Sapria himalayana HOM05D003389 ORTHO05D003917 5.9e-55 218.0 149 73.8
Os06g0712400 Oryza sativa ssp. japonica HOM05D003389 ORTHO05D003917 7.7e-55 217.6 137 76.6
Aqoxy5G03952 Aquilegia oxysepala HOM05D003389 ORTHO05D003917 1.0e-54 217.2 148 72.3
SEGI_34401 Sequoiadendron giganteum HOM05D003389 ORTHO05D003917 6.5e-54 214.5 148 71.6
Zm00001eb227790 Zea mays HOM05D003389 ORTHO05D003917 1.0e-51 207.2 160 66.9
ATR0661G488 Amborella trichopoda HOM05D003389 ORTHO05D003917 1.4e-51 206.8 155 68.4
RcHm_v2.0_Chr1g0379891 Rosa chinensis HOM05D003389 ORTHO05D003917 2.3e-51 206.1 153 73.9
Eucgr.D01936 Eucalyptus grandis HOM05D003389 ORTHO05D003917 6.7e-51 204.5 139 72.7
Hma1.2p1_0138F.1_g062730 Hydrangea macrophylla HOM05D003389 ORTHO05D003917 6.7e-51 204.5 155 73.5
SMO367G0360 Selaginella moellendorffii HOM05D003389 ORTHO05D003917 4.4e-50 201.8 141 68.8
AagrBONN_evm.TU.Sc2ySwM_228.3893 Anthoceros agrestis HOM05D003389 ORTHO05D003917 7.4e-50 201.1 133 69.9
COL.COLO4_23793 Corchorus olitorius HOM05D003389 ORTHO05D003917 9.7e-50 200.7 104 95.2
Lj2C201G3 Lonicera japonica HOM05D003389 ORTHO05D003917 3.1e-48 195.7 105 90.5
Lj2C200G2 Lonicera japonica HOM05D003389 ORTHO05D003917 2.6e-47 192.6 104 91.3
Mapoly0108s0010 Marchantia polymorpha HOM05D003389 ORTHO05D003917 1.0e-46 190.7 148 64.2
Glyma.04G257602 Glycine max HOM05D003389 ORTHO05D003917 1.3e-46 190.3 104 92.3
Glyma.03G264902 Glycine max HOM05D003389 ORTHO05D003917 3.8e-46 188.7 104 91.3
Pp3c17_3230 Physcomitrium patens HOM05D003389 ORTHO05D003917 8.5e-46 187.6 135 66.7
Actinidia14499 Actinidia chinensis HOM05D003389 ORTHO05D003917 5.5e-45 184.9 155 68.4
Nitab4.5_0001714g0090 Nicotiana tabacum HOM05D003389 ORTHO05D003917 9.4e-45 184.1 123 80.5
Pp3c12_2860 Physcomitrium patens HOM05D003389 ORTHO05D003917 9.4e-45 184.1 135 66.7
TAR636G0614 Trochodendron aralioides HOM05D003389 ORTHO05D003917 9.4e-45 184.1 101 89.1
A01p14230 Brassica napus HOM05D003389 ORTHO05D003917 2.7e-44 182.6 154 63.0
BraA01t01370Z Brassica rapa HOM05D003389 ORTHO05D003917 2.3e-43 179.5 154 61.7
Aa31LG6G5010 Aethionema arabicum HOM05D003389 ORTHO05D003917 4.0e-43 178.7 150 64.0
Rhsim11G0008100 Rhododendron simsii HOM05D003389 ORTHO05D003917 3.3e-42 175.6 125 75.2
CDE12G0774 Ceratophyllum demersum HOM05D003389 ORTHO05D003917 1.3e-41 173.7 117 73.5
Haze_08980 Corylus avellana HOM05D003389 ORTHO05D003917 2.2e-41 172.9 174 60.9
vmacro00214 Vaccinium macrocarpon HOM05D003389 ORTHO05D003917 7.0e-40 167.9 168 58.3
C01p17500 Brassica napus HOM05D003389 ORTHO05D003917 1.2e-39 167.2 147 61.2
Sp7g21050 Schrenkiella parvula HOM05D003389 ORTHO05D003917 1.6e-39 166.8 149 57.7
DCAR_008431 Daucus carota HOM05D003389 ORTHO05D003917 5.9e-39 164.9 110 76.4
BcaNung01008 Brassica carinata HOM05D003389 ORTHO05D003917 1.0e-38 164.1 154 58.4
BolC1t01690H Brassica oleracea HOM05D003389 ORTHO05D003917 1.0e-38 164.1 152 59.2
BcaC09g51049 Brassica carinata HOM05D003389 ORTHO05D003917 1.3e-38 163.7 151 59.6
Migut.A00905 Erythranthe guttata HOM05D003389 ORTHO05D003917 1.3e-38 163.7 200 49.5
Migut.A00906 Erythranthe guttata HOM05D003389 ORTHO05D003917 1.5e-37 160.2 164 53.0
ClCG01G003270 Citrullus lanatus HOM05D003389 ORTHO05D003917 2.5e-37 159.5 163 56.4
MELO3C005619.2 Cucumis melo HOM05D003389 ORTHO05D003917 2.1e-36 156.4 137 62.0
Thhalv10027519m.g Eutrema salsugineum HOM05D003389 ORTHO05D003917 3.6e-36 155.6 144 56.2
TPR.G14842 Trifolium pratense HOM05D003389 ORTHO05D003917 3.6e-36 155.6 80 93.8
Eucgr.D01938 Eucalyptus grandis HOM05D003389 ORTHO05D003917 1.0e-35 154.1 82 91.5
FAN09G4798 Fragaria x ananassa HOM05D003389 ORTHO05D003917 2.6e-34 149.4 133 61.7
HanXRQChr02g0043491 Helianthus annuus HOM05D003389 ORTHO05D003917 4.4e-34 148.7 155 48.4
BraA03t14599Z Brassica rapa HOM05D003389 ORTHO05D003917 2.3e-30 136.3 155 47.1
BraA03t14615Z Brassica rapa HOM05D003389 ORTHO05D003917 2.3e-30 136.3 155 47.1
MCO06G239 Micromonas commoda HOM05D003389 ORTHO05D003917 2.9e-30 136.0 153 49.7
TPR.G19581 Trifolium pratense HOM05D003389 ORTHO05D003917 2.8e-28 129.4 78 83.3
PRCOL_00006333 Prasinoderma coloniale HOM05D003389 ORTHO05D003917 8.0e-28 127.9 143 50.3
AL7G30560 Arabidopsis lyrata HOM05D003389 ORTHO05D003917 1.8e-27 126.7 134 48.5
TAR636G3266 Trochodendron aralioides HOM05D003389 ORTHO05D003917 1.8e-27 126.7 144 52.1
CBR_g38139 Chara braunii HOM05D003389 ORTHO05D003917 7.5e-26 121.3 102 59.8
Cre06.g304850 Chlamydomonas reinhardtii HOM05D003389 ORTHO05D003917 2.2e-25 119.8 145 46.2
Lj8A241G19 Lonicera japonica HOM05D003389 ORTHO05D003917 4.9e-25 118.6 126 58.7
HanXRQChr02g0043501 Helianthus annuus HOM05D003389 ORTHO05D003917 1.8e-24 116.7 153 43.1
Carub.0007s1831 Capsella rubella HOM05D003389 ORTHO05D003917 3.1e-24 115.9 150 44.0
AT4G22960 Arabidopsis thaliana HOM05D003389 ORTHO05D003917 7.0e-24 114.8 135 45.2
PSO170G2389 Papaver somniferum HOM05D003389 ORTHO05D003917 1.2e-23 114.0 156 45.5
PSO302G0081 Papaver somniferum HOM05D003389 ORTHO05D003917 1.6e-23 113.6 156 44.2
MBI04_g06622_MAGBIO Magnolia biondii HOM05D003389 ORTHO05D003917 1.5e-21 107.1 90 61.1
Eucgr.D01937 Eucalyptus grandis HOM05D003389 ORTHO05D003917 1.2e-18 97.4 169 40.8
Os06g0721600 Oryza sativa ssp. japonica HOM05D003389 ORTHO05D020930 2.9e-17 92.8 131 38.9
Os06g0723400 Oryza sativa ssp. japonica HOM05D003389 ORTHO05D020930 2.9e-17 92.8 131 38.9
DCAR_022882 Daucus carota HOM05D003389 ORTHO05D003917 1.6e-15 87.0 95 54.7
SGA_v2.0_scaffold555G52910 Striga asiatica HOM05D024566 ORTHO05D020930 1.1e-13 80.9 129 39.5
Zm00001eb033290 Zea mays HOM05D003389 ORTHO05D003917 2.5e-13 79.7 151 33.8
BcaB01g02667 Brassica carinata HOM05D003389 ORTHO05D003917 1.6e-12 77.0 116 42.2
FAN09G1540 Fragaria x ananassa HOM05D003389 ORTHO05D003917 3.1e-11 72.8 126 42.1
MELO3C003304.2 Cucumis melo HOM05D003389 ORTHO05D003917 8.9e-11 71.2 55 65.5
COL.COLO4_11055 Corchorus olitorius HOM05D003389 ORTHO05D003917 5.8e-10 68.6 34 85.3
Lalb_Chr16g0379941 Lupinus albus HOM05D003389 ORTHO05D003917 3.2e-08 62.8 40 72.5
DCAR_006771 Daucus carota HOM05D000526 ORTHO05D003917 2.0e-07 60.1 37 81.1
CsaV3_4G012220 Cucumis sativus L. HOM05D003389 ORTHO05D003917 2.7e-07 59.7 36 77.8
Aqoxy1G01439 Aquilegia oxysepala HOM05D001108 ORTHO05D001619 4.6e-07 58.9 105 30.5


User provided reference genes

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